id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
5460	problem with displaying secondary structures	elzbieta.wator@…	Eric Pettersen	"{{{
Hi,
I am trying to prepare figures for my publications and I have a problem with ss assignment. When I open structure in pymol, everything is assigned correctly. However, when I open the same structure in ChimeraX (1.2.5) I have gaps in helices and also not all of B strands are assigned correctly.

[cid:26d7116c-58f7-4491-bc31-6544850834fd]

I tried ""dssp"" command, but I probably type something wrong, because everytime I got ""expected keyword"" reply.
Also I tried to do that manually using such commands

setattr /B:5-7 res ss_type 1

and for some regions it works and for some not e.g  I can change the whole helices with gaps to loop but in other way around it again gives me back helices with gaps.

I've just started learning ChimeraX so probably there is some easy explanation, but I would be really grateful for your help.

Best regards,
Ela Wator

}}}

[[Image(image.png)]]
"	defect	closed	normal		Depiction		not a bug						all	ChimeraX