id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 5454 Difficulty panning/zooming ruggero.gabbrielli@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC) Description I am not able to zoom or pan. This happens frequently. The only way out I found is to close and open the progam once again. Log: UCSF ChimeraX version: 1.2.5 (2021-05-24) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/ruggerogabbrielli/Downloads/7df4.pdb 7df4.pdb title: Sars-cov-2 S-ACE2 complex [more info...] Chain information for 7df4.pdb #1 --- Chain | Description A | angiotensin-converting enzyme 2 B C D | spike glycoprotein Non-standard residues in 7df4.pdb #1 --- NAG — 2-acetamido-2-deoxy-β-D-glucopyranose (N-acetyl-β-D-glucosamine; 2-acetamido-2-deoxy-β-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-acetyl-D-glucosamine) > select /A 4870 atoms, 5010 bonds, 597 residues, 1 model selected > select ~sel 26050 atoms, 26737 bonds, 15 pseudobonds, 3273 residues, 2 models selected > hide sel cartoons > hide sel atoms > ui tool show ""Show Sequence Viewer"" > sequence chain /A Alignment identifier is 1/A > select /A:341 9 atoms, 8 bonds, 1 residue, 1 model selected > select /A:341-343 21 atoms, 20 bonds, 3 residues, 1 model selected > hbonds sel reveal true 1 hydrogen bonds found > select /A:19 6 atoms, 5 bonds, 1 residue, 1 model selected > select /A:19-382 2962 atoms, 3041 bonds, 1 pseudobond, 364 residues, 2 models selected > hbonds sel reveal true 314 hydrogen bonds found > mlp sel Map values for surface ""7df4.pdb_A SES surface"": minimum -27.26, mean -4.24, maximum 24.58 To also show corresponding color key, enter the above mlp command and add key true > mlp sel Map values for surface ""7df4.pdb_A SES surface"": minimum -27.26, mean -4.24, maximum 24.58 To also show corresponding color key, enter the above mlp command and add key true > color sel bychain > hide sel surfaces > select /A:19-34 134 atoms, 136 bonds, 13 pseudobonds, 16 residues, 2 models selected > select /A:19-96 640 atoms, 652 bonds, 63 pseudobonds, 78 residues, 2 models selected > select /A:19-34 134 atoms, 136 bonds, 13 pseudobonds, 16 residues, 2 models selected > select /A:19-359 2775 atoms, 2848 bonds, 253 pseudobonds, 341 residues, 2 models selected > ~hbonds > select 30920 atoms, 31747 bonds, 15 pseudobonds, 3870 residues, 2 models selected > hide sel surfaces > hide sel cartoons > hide sel atoms > select /A:20-35 137 atoms, 139 bonds, 16 residues, 1 model selected > select /A:20-359 2769 atoms, 2842 bonds, 340 residues, 1 model selected > show sel cartoons > select clear > select /A:19-34 134 atoms, 136 bonds, 16 residues, 1 model selected > select /A:19-359 2775 atoms, 2848 bonds, 341 residues, 1 model selected > show sel cartoons > select clear > show cartoons > show cartoons > hide cartoons > undo > undo > undo > show atoms > hide atoms > select /A:19 6 atoms, 5 bonds, 1 residue, 1 model selected > select /A:19-50 270 atoms, 277 bonds, 32 residues, 1 model selected > show sel atoms > style sel stick Changed 270 atom styles > hide sel cartoons > select 30920 atoms, 31747 bonds, 15 pseudobonds, 3870 residues, 2 models selected > hide sel cartoons > hide sel atoms > select /A:19-34 134 atoms, 136 bonds, 16 residues, 1 model selected > select /A:19-53 293 atoms, 300 bonds, 35 residues, 1 model selected > show sel cartoons > select /A:339-340 16 atoms, 15 bonds, 2 residues, 1 model selected > select /A:340-359 158 atoms, 162 bonds, 20 residues, 1 model selected > show sel cartoons > select /A:53 8 atoms, 7 bonds, 1 residue, 1 model selected > select /A:50-53 35 atoms, 35 bonds, 4 residues, 1 model selected > select /A:337-338 12 atoms, 11 bonds, 2 residues, 1 model selected > select /A:337-359 177 atoms, 181 bonds, 23 residues, 1 model selected > select /A:324 7 atoms, 6 bonds, 1 residue, 1 model selected > select /A:324-359 283 atoms, 291 bonds, 36 residues, 1 model selected > show sel cartoons > mlp sel Map values for surface ""7df4.pdb_A SES surface"": minimum -27.26, mean -4.24, maximum 24.58 To also show corresponding color key, enter the above mlp command and add key true > hide sel surfaces > select 30920 atoms, 31747 bonds, 15 pseudobonds, 3870 residues, 2 models selected > show sel cartoons > show sel atoms > hbonds sel reveal true 2605 hydrogen bonds found > ui tool show ""Show Sequence Viewer"" > sequence chain /B Alignment identifier is 1/B > select /B:35-36 11 atoms, 10 bonds, 2 residues, 1 model selected > select /B:35-40 50 atoms, 52 bonds, 6 residues, 1 model selected > select /B:293 8 atoms, 7 bonds, 1 residue, 1 model selected > select /B:293-308 123 atoms, 124 bonds, 12 pseudobonds, 16 residues, 2 models selected > select /B:335 8 atoms, 7 bonds, 1 residue, 1 model selected > select /B:335-412 620 atoms, 637 bonds, 30 pseudobonds, 78 residues, 2 models selected > select /B:441 8 atoms, 7 bonds, 1 residue, 1 model selected > select /B:441-446 42 atoms, 41 bonds, 6 residues, 1 model selected > select 30920 atoms, 31747 bonds, 2620 pseudobonds, 3870 residues, 3 models selected > hide sel atoms > ~hbonds > select /B:473 12 atoms, 12 bonds, 1 residue, 1 model selected > select /B:473-506 260 atoms, 270 bonds, 34 residues, 1 model selected > select /B:479 7 atoms, 7 bonds, 1 residue, 1 model selected > select /B:479-504 196 atoms, 204 bonds, 26 residues, 1 model selected > select /B:476-477 10 atoms, 9 bonds, 2 residues, 1 model selected > select /B:476-517 327 atoms, 339 bonds, 42 residues, 1 model selected > select /B:474 9 atoms, 8 bonds, 1 residue, 1 model selected > select /B:474-517 341 atoms, 353 bonds, 44 residues, 1 model selected > select /B:513 8 atoms, 7 bonds, 1 residue, 1 model selected > select /B:474-513 307 atoms, 318 bonds, 40 residues, 1 model selected > select /B:489-504 126 atoms, 131 bonds, 16 residues, 1 model selected > select /B:474-504 227 atoms, 235 bonds, 31 residues, 1 model selected > select /B:442 8 atoms, 7 bonds, 1 residue, 1 model selected > select /B:442-473 275 atoms, 281 bonds, 32 residues, 1 model selected > select 30920 atoms, 31747 bonds, 15 pseudobonds, 3870 residues, 2 models selected > hbonds sel reveal true 2605 hydrogen bonds found > select /B:474 9 atoms, 8 bonds, 1 residue, 1 model selected > select /B:474-503 223 atoms, 231 bonds, 8 pseudobonds, 30 residues, 2 models selected > select /B:473 12 atoms, 12 bonds, 1 residue, 1 model selected > select /B:473-503 235 atoms, 244 bonds, 8 pseudobonds, 31 residues, 2 models selected > select /A:19 6 atoms, 5 bonds, 1 residue, 1 model selected > select /A:19-83 534 atoms, 545 bonds, 58 pseudobonds, 65 residues, 2 models selected > select /A:86 9 atoms, 8 bonds, 1 residue, 1 model selected > select /A:86-89 35 atoms, 34 bonds, 4 residues, 1 model selected > zoom Pixel size at center of rotation is 0.0817 > select /A:19 6 atoms, 5 bonds, 1 residue, 1 model selected > select /A:19-83 534 atoms, 545 bonds, 58 pseudobonds, 65 residues, 2 models selected > select /A:321 7 atoms, 7 bonds, 1 residue, 1 model selected > select /A:321-362 327 atoms, 337 bonds, 15 pseudobonds, 42 residues, 2 models selected > select /A:325 9 atoms, 8 bonds, 1 residue, 1 model selected > select /A:325-361 290 atoms, 299 bonds, 11 pseudobonds, 37 residues, 2 models selected > select /A:324 7 atoms, 6 bonds, 1 residue, 1 model selected > select /A:324-362 304 atoms, 313 bonds, 15 pseudobonds, 39 residues, 2 models selected > select ::name=""LYS"" 1602 atoms, 1431 bonds, 7 pseudobonds, 178 residues, 2 models selected > show sel atoms > select /A:362 7 atoms, 6 bonds, 1 residue, 1 model selected > select /A:324-362 304 atoms, 313 bonds, 15 pseudobonds, 39 residues, 2 models selected > select /A:19 6 atoms, 5 bonds, 1 residue, 1 model selected > select /A:19-50 270 atoms, 277 bonds, 30 pseudobonds, 32 residues, 2 models selected > select /A:51 8 atoms, 7 bonds, 1 residue, 1 model selected > select /A:51-83 264 atoms, 267 bonds, 23 pseudobonds, 33 residues, 2 models selected > select /A:19-20 13 atoms, 12 bonds, 2 residues, 1 model selected > select /A:19-50 270 atoms, 277 bonds, 30 pseudobonds, 32 residues, 2 models selected > select /A:83 12 atoms, 12 bonds, 1 residue, 1 model selected > select /A:19-83 534 atoms, 545 bonds, 58 pseudobonds, 65 residues, 2 models selected > select /A:19-83,324-362 838 atoms, 858 bonds, 76 pseudobonds, 104 residues, 2 models selected > select ~sel 30082 atoms, 30889 bonds, 2544 pseudobonds, 3766 residues, 3 models selected > hide sel atoms > hide sel cartoons > select ::name=""ARG"" 1386 atoms, 1260 bonds, 2 pseudobonds, 126 residues, 2 models selected > color (#!1 & sel) red > select ::name=""LYS"" 1602 atoms, 1431 bonds, 7 pseudobonds, 178 residues, 2 models selected > color (#!1 & sel) yellow > select ::name=""HIS"" 580 atoms, 581 bonds, 58 residues, 1 model selected > color (#!1 & sel) orange > select ::name=""GLN"" 1773 atoms, 1583 bonds, 13 pseudobonds, 197 residues, 2 models selected > select ::name=""GLU"" 1476 atoms, 1316 bonds, 7 pseudobonds, 164 residues, 2 models selected > color (#!1 & sel) blue > select ::name=""ASP"" 1408 atoms, 1236 bonds, 5 pseudobonds, 176 residues, 2 models selected > color (#!1 & sel) cyan > show sel atoms > hide sel atoms > interfaces sel & ~solvent 0 buried areas: > select /A:19 6 atoms, 5 bonds, 1 residue, 1 model selected > select /A:19-83 534 atoms, 545 bonds, 58 pseudobonds, 65 residues, 2 models selected > select /A:19-83,324-362 838 atoms, 858 bonds, 76 pseudobonds, 104 residues, 2 models selected > hbonds sel reveal true 89 hydrogen bonds found > pan Unknown command: pan > select /A:19-20 13 atoms, 12 bonds, 2 residues, 1 model selected > select /A:19-83 534 atoms, 545 bonds, 58 pseudobonds, 65 residues, 2 models selected > select /A:324 7 atoms, 6 bonds, 1 residue, 1 model selected > select /A:324-362 304 atoms, 313 bonds, 15 pseudobonds, 39 residues, 2 models selected > hide sel atoms > select /A:19-83,324-362 838 atoms, 858 bonds, 76 pseudobonds, 104 residues, 2 models selected > hide sel atoms > select 30920 atoms, 31747 bonds, 104 pseudobonds, 3870 residues, 3 models selected > hide sel atoms > ui tool show Distances > select /A:324 7 atoms, 6 bonds, 1 residue, 1 model selected > select /A:324-354 237 atoms, 244 bonds, 9 pseudobonds, 31 residues, 2 models selected > ui tool show Distances > select /A:19-20 13 atoms, 12 bonds, 2 residues, 1 model selected > select /A:19-83 534 atoms, 545 bonds, 58 pseudobonds, 65 residues, 2 models selected > select /A:324 7 atoms, 6 bonds, 1 residue, 1 model selected > select /A:324-362 304 atoms, 313 bonds, 15 pseudobonds, 39 residues, 2 models selected > select /A:19-83,324-362 838 atoms, 858 bonds, 76 pseudobonds, 104 residues, 2 models selected > hbonds sel reveal true 89 hydrogen bonds found > select /A:84 7 atoms, 7 bonds, 1 residue, 1 model selected > select /A:84-89 50 atoms, 50 bonds, 6 residues, 1 model selected > show sel cartoons > select /A:90 8 atoms, 7 bonds, 1 residue, 1 model selected > select /A:90-130 313 atoms, 313 bonds, 41 residues, 1 model selected > show sel cartoons > ui mousemode right rotate > ui mousemode right translate > ui mousemode right zoom > ui mousemode right distance > ui mousemode right translate > select /A:131 9 atoms, 8 bonds, 1 residue, 1 model selected > select /A:131-144 108 atoms, 110 bonds, 14 residues, 1 model selected > show sel cartoons > select /A:145 9 atoms, 8 bonds, 1 residue, 1 model selected > select /A:145-156 88 atoms, 88 bonds, 12 residues, 1 model selected > show sel cartoons > select /A:157 8 atoms, 7 bonds, 1 residue, 1 model selected > select /A:157-217 537 atoms, 555 bonds, 61 residues, 1 model selected > show sel cartoons > hide sel cartoons > select /A:218 6 atoms, 5 bonds, 1 residue, 1 model selected > select /A:90-218 1052 atoms, 1075 bonds, 129 residues, 1 model selected > hide sel cartoons > select /A:90-91 16 atoms, 15 bonds, 2 residues, 1 model selected > select /A:90-130 313 atoms, 313 bonds, 41 residues, 1 model selected > show sel cartoons > select /A:129-130 11 atoms, 10 bonds, 2 residues, 1 model selected > select /A:107-130 185 atoms, 185 bonds, 24 residues, 1 model selected > hide sel cartoons > select /A:107 7 atoms, 6 bonds, 1 residue, 1 model selected > select /A:107-109 21 atoms, 20 bonds, 3 residues, 1 model selected > show sel cartoons OpenGL version: 4.1 Metal - 71.7.1 OpenGL renderer: Apple M1 OpenGL vendor: AppleHardware: Hardware Overview: Model Name: MacBook Air Model Identifier: MacBookAir10,1 Processor Name: Unknown Processor Speed: 2,4 GHz Number of Processors: 1 Total Number of Cores: 8 L2 Cache (per Core): 4 MB Memory: 8 GB Software: System Software Overview: System Version: macOS 11.6 (20G165) Kernel Version: Darwin 20.6.0 Time since boot: 11 days 16:36 Graphics/Displays: Apple M1: Chipset Model: Apple M1 Type: GPU Bus: Built-In Total Number of Cores: 8 Vendor: Apple (0x106b) Metal Family: Supported, Metal GPUFamily Apple 7 Displays: Color LCD: Resolution: 2880 x 1800 UI Looks like: 1440 x 900 @ 60.00Hz Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal Locale: (None, 'UTF-8') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.2 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2020.12.5 cftime: 1.5.0 chardet: 3.0.4 ChimeraX-AddCharge: 1.0.1 ChimeraX-AddH: 2.1.6 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.13.2 ChimeraX-AtomicLibrary: 3.1.3 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 1.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.5.2 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.1 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.1 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.2.1 ChimeraX-CommandLine: 1.1.4 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.2.5 ChimeraX-CoreFormats: 1.0 ChimeraX-coulombic: 1.1.1 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.1 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.3 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.0 ChimeraX-Hbonds: 2.1 ChimeraX-Help: 1.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.0 ChimeraX-ImageFormats: 1.1 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-Label: 1.0 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.0.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.0 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 1.2.1 ChimeraX-MDcrds: 2.2 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.3 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.0.1 ChimeraX-ModelPanel: 1.0.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.1 ChimeraX-OpenCommand: 1.5 ChimeraX-PDB: 2.4.1 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.1 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.0.1 ChimeraX-ReadPbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.4 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SeqView: 2.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.0 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.0.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.3.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.0.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.7.6 ChimeraX-uniprot: 2.1 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.3 comtypes: 1.1.7 cxservices: 1.0 cycler: 0.10.0 Cython: 0.29.21 decorator: 5.0.9 distlib: 0.3.1 docutils: 0.16 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 2.10.0 html2text: 2020.1.16 idna: 2.10 ihm: 0.17 imagecodecs: 2020.5.30 imagesize: 1.2.0 ipykernel: 5.3.4 ipython: 7.18.1 ipython-genutils: 0.2.0 jedi: 0.17.2 Jinja2: 2.11.2 jupyter-client: 6.1.7 jupyter-core: 4.7.1 kiwisolver: 1.3.1 line-profiler: 2.1.2 lxml: 4.6.2 lz4: 3.1.0 MarkupSafe: 2.0.1 matplotlib: 3.3.2 matplotlib-inline: 0.1.2 msgpack: 1.0.0 netCDF4: 1.5.4 networkx: 2.5 numexpr: 2.7.3 numpy: 1.19.2 numpydoc: 1.1.0 openvr: 1.14.1501 packaging: 20.9 ParmEd: 3.2.0 parso: 0.7.1 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 7.2.0 pip: 21.0.1 pkginfo: 1.5.0.1 prompt-toolkit: 3.0.18 psutil: 5.7.2 ptyprocess: 0.7.0 pycollada: 0.7.1 pydicom: 2.0.0 Pygments: 2.7.1 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.1 pytz: 2021.1 pyzmq: 22.0.3 qtconsole: 4.7.7 QtPy: 1.9.0 RandomWords: 0.3.0 requests: 2.24.0 scipy: 1.5.2 setuptools: 50.3.2 sfftk-rw: 0.6.7.dev1 six: 1.15.0 snowballstemmer: 2.1.0 sortedcontainers: 2.2.2 Sphinx: 3.2.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2020.9.3 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.0.5 urllib3: 1.25.11 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.36.0 wheel-filename: 1.3.0 }}} " defect assigned normal General Controls all ChimeraX