id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 5418 "Crash ""access violation"", no traceback" chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.19042 ChimeraX Version: 1.3.dev202110140902 (2021-10-14 09:02:43 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Windows fatal exception: code 0x8001010e Thread 0x00000990 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 576 in _handle_results File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00004fe0 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 528 in _handle_tasWindows fatal exception: code 0xWindows fatal exception: 8001010eWindows fatal exception: code 0xcode 0x8001010e 8001010e Windows fatal exception: Windows fatal exception: code 0xk8001010es code 0xWindows fatal exception: Windows fatal exception: code 0xcode 0x8001010eWindows fatal exception: code 0x Windows fatal exception: code 0x File 8001010e8001010e 8001010eWindows fatal exception: code 0x8001010eWindows fatal exception: code 0x8001010eWindows fatal exception: code 0x8001010e Windows fatal exception: code 0xWindows fatal exception: code 0x8001010e8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e ""Windows fatal exception: code 0x8001010e CWindows fatal exception: code 0x8001010e :Windows fatal exception: code 0x8001010e \Program Files\ChimeraX 1.3.dev\bin\lib\threading.Windows fatal exception: py""code 0x, line 910 in 8001010erun File ""C:\Program 8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0xWindows fatal exception: code 0x8001010e8001010e FWindows fatal exception: code 0xWindows fatal exception: 8001010e code 0xWindows fatal exception: 8001010e code 0xiWindows fatal exception: 8001010ecode 0x 8001010e lWindows fatal exception: ecode 0xWindows fatal exception: 8001010e code 0xWindows fatal exception: code 0x8001010es 8001010e\Windows fatal exception: code 0x8001010eWindows fatal exception: code 0x8001010e Ch imeraX 1.3.dev\bin\lib\threading.py""Windows fatal exception: , line code 0x9738001010e in _bootstrap_inner Windows fatal exception: File code 0x""C:\Program Files\ChimeraX 1.8001010e3.dev\bin\lib\threading.py"" , line 930 in _bootstrap Thread 0x000050c4 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\connection.py""Windows fatal exception: , line code 0x8168001010e in _exhaustive_waiWindows fatal exception: tcode 0x 8001010e File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\connection.py""Windows fatal exception: , line code 0x8848001010e in wait Windows fatal exception: File code 0x""C:\Prog8001010eram Files\ChimeraX 1.3.dev\bin\lWindows fatal exception: icode 0xb8001010e\mu ltiprocessWindows fatal exception: icode 0xn8001010eg \pool.pyWindows fatal exception: ""code 0x8001010e , line 499 in Windows fatal exception: code 0x8001010e _wait_for_updates File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 519 in _handle_workers File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\tWindows fatal exception: code 0xh8001010ereading.py"" , line 973 in _bootstrap_inner Windows fatal exception: File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in code 0x_bootstrap 8001010e Thread 0x0000359c (most recent call first): Windows fatal exception: code 0x8001010e File Windows fatal exception: code 0x8001010e ""C:\Program Files\ChiWindows fatal exception: code 0x8001010e meraX 1.3.dev\bin\lWindows fatal exception: ib\multiprocessing\pool.py"", line 114 in code 0xworker 8001010e File ""C:\Program Files\CWindows fatal exception: himeraX 1.3.dev\bin\lib\threading.py""code 0x, line 910 in 8001010erun File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py""Windows fatal exception: , line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap code 0x Thread 0x8001010e 00003964 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00001514 (most recent call first): Windows fatal exception: code 0x File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""8001010eC:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"" , line 910 in run Windows fatal exception: File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraXWindows fatal exception: code 0xcode 0x8001010e 1.3.dev\Windows fatal exception: bcode 0xin\8001010elib\t8001010ehread ing.p Windows fatal exception: code 0xy8001010eWindows fatal exception: ""code 0x, line 930 in 8001010e _Windows fatal exception: bcode 0xo8001010eo Windows fatal exception: Windows fatal exception: code 0x8001010et code 0xsWindows fatal exception: 8001010ecode 0x tr8001010ea pWindows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: Thread 0xcode 0x000011348001010e (most recent call first): Windows fatal exception: code 0x File 8001010e"" C:\ProWindows fatal exception: gram code 0xF8001010e iles\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\PrograWindows fatal exception: m Files\ChimeraX code 0x1.3.dev\8001010ebin\lib\threading .py"", line 930Windows fatal exception: code 0x in 8001010e_boots trWindows fatal exception: code 0xap 8001010e Thread 0xWindows fatal exception: code 0x8001010e 00004684Windows fatal exception: code 0x (most recent call first): 8001010e File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker Windows fatal exception: File code 0x""C:\Program Files\ChimeraX 1.3.dev\bin\lib\thread8001010eing.py"" , line 910 in run Windows fatal exception: code 0x File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00002f18 (most recent call first): 8001010e File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x000030e8 (most recent call first): File ""CWindows fatal exception: :\Program Files\Chcode 0ximeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py""8001010e, line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00004148 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x000022d0 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 135 in show_open_file_dialog File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 107 in File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\site-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x00000990 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 576 in _handle_results File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00004fe0 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 528 in _handle_tasks File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x000050c4 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\connection.py"", line 816 in _exhaustive_wait File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\connection.py"", line 884 in wait File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 499 in _wait_for_updates File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 519 in _handle_workers File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x0000359c (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00003964 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00001514 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00001134 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00004684 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00002f18 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x000030e8 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00004148 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x000022d0 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 135 in show_open_file_dialog File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 107 in File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\site-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x00000990 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 576 in _handle_results File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00004fe0 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 528 in _handle_tasks File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x000050c4 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\connection.py"", line 816 in _exhaustive_wait File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\connection.py"", line 884 in wait File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 499 in _wait_for_updates File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 519 in _handle_workers File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x0000359c (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00003964 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00001514 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00001134 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00004684 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00002f18 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x000030e8 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00004148 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x000022d0 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 135 in show_open_file_dialog File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\site-packages\chimerax\open_command\dialog.py"", line 107 in File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\site-packages\chimerax\ui\gui.py"", line 301 in event_loop File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\site-packages\ChimeraX_main.py"", line 867 in init File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\site-packages\ChimeraX_main.py"", line 1018 in File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\runpy.py"", line 87 in _run_code File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\runpy.py"", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x00000990 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 576 in _handle_results File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00004fe0 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 528 in _handle_tasks File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x000050c4 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\connection.py"", line 816 in _exhaustive_wait File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\connection.py"", line 884 in wait File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 499 in _wait_for_updates File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 519 in _handle_workers File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x0000359c (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00003964 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00001514 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00001134 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00004684 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00002f18 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x000030e8 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x00004148 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\multiprocessing\pool.py"", line 114 in worker File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 910 in run File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 973 in _bootstrap_inner File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\threading.py"", line 930 in _bootstrap Thread 0x000022d0 (most recent call first): File ""C:\Program Files\ChimeraX 1.3.dev\bin\lib\site-packages\chimerax\mouse_modes\mousemodes.py"", line 515 in _cursor_position Windows fatal exception: access violation ===== Log before crash start ===== UCSF ChimeraX version: 1.3.dev202110140902 (2021-10-14) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > toolshed show Downloading bundle SEQCROW-1.3-py3-none-any.whl Errors may have occurred when running pip: pip standard error: \--- WARNING: Value for scheme.platlib does not match. Please report this to distutils: C:\Users\lenha\AppData\Local\UCSF\ChimeraX\1.3\site-packages sysconfig: C:\Users\lenha\AppData\Roaming\Python\Python39\site-packages WARNING: Value for scheme.purelib does not match. Please report this to distutils: C:\Users\lenha\AppData\Local\UCSF\ChimeraX\1.3\site-packages sysconfig: C:\Users\lenha\AppData\Roaming\Python\Python39\site-packages WARNING: Value for scheme.headers does not match. Please report this to distutils: C:\Users\lenha\AppData\Local\UCSF\ChimeraX\Python39\Include\Send2Trash sysconfig: C:\Users\lenha\AppData\Roaming\Python\Python39\Include\Send2Trash WARNING: Value for scheme.scripts does not match. Please report this to distutils: C:\Users\lenha\AppData\Local\UCSF\ChimeraX\Python39\Scripts sysconfig: C:\Users\lenha\AppData\Roaming\Python\Python39\Scripts WARNING: Value for scheme.data does not match. Please report this to distutils: C:\Users\lenha\AppData\Local\UCSF\ChimeraX sysconfig: C:\Users\lenha\AppData\Roaming\Python WARNING: Additional context: user = True home = None root = None prefix = None WARNING: Value for scheme.headers does not match. Please report this to distutils: C:\Users\lenha\AppData\Local\UCSF\ChimeraX\Python39\Include\SEQCROW sysconfig: C:\Users\lenha\AppData\Roaming\Python\Python39\Include\SEQCROW WARNING: Value for scheme.headers does not match. Please report this to distutils: C:\Users\lenha\AppData\Local\UCSF\ChimeraX\Python39\Include\UNKNOWN sysconfig: C:\Users\lenha\AppData\Roaming\Python\Python39\Include\UNKNOWN WARNING: You are using pip version 21.2.4; however, version 21.3 is available. You should consider upgrading via the 'C:\Program Files\ChimeraX 1.3.dev\bin\ChimeraX.exe -m pip install --upgrade pip' command. \--- pip standard output: \--- Looking in indexes: https://pypi.org/simple, https://cxtoolshed.rbvi.ucsf.edu/pypi/ Processing c:\users\lenha\downloads\seqcrow-1.3-py3-none-any.whl Collecting Send2Trash Downloading Send2Trash-1.8.0-py3-none-any.whl (18 kB) Requirement already satisfied: ChimeraX-Core=1.2 in c:\program files\chimerax 1.3.dev\bin\lib\site-packages (from SEQCROW==1.3) (1.3.dev202110140902) Requirement already satisfied: psutil in c:\program files\chimerax 1.3.dev\bin\lib\site-packages (from SEQCROW==1.3) (5.8.0) Requirement already satisfied: scipy in c:\program files\chimerax 1.3.dev\bin\lib\site-packages (from SEQCROW==1.3) (1.7.1) Requirement already satisfied: numpy=1.16.5 in c:\program files\chimerax 1.3.dev\bin\lib\site-packages (from scipy->SEQCROW==1.3) (1.21.2) Installing collected packages: Send2Trash, SEQCROW Successfully installed SEQCROW-1.3 Send2Trash-1.8.0 \--- Successfully installed SEQCROW-1.3 Send2Trash-1.8.0 Installed SEQCROW (1.3) > open E:\Projects\MoS2\MD\Umbrella\twolayers\Threonine\threonine.pdb format > pdb Chain information for threonine.pdb #1 --- Chain | Description X | No description available > ui tool show ""Managed Models"" ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.3.dev202110140902 (2021-10-14) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 3.3.13596 Core Profile Forward-Compatible Context 20.10.44 27.20.11044.7 OpenGL renderer: AMD Radeon(TM) Vega 8 Graphics OpenGL vendor: ATI Technologies Inc. Manufacturer: HP Model: HP ENVY x360 Convertible 15-ds0xxx OS: Microsoft Windows 10 Home (Build 19042) Memory: 14,900,236,288 MaxProcessMemory: 137,438,953,344 CPU: 8 AMD Ryzen 5 3500U with Radeon Vega Mobile Gfx OSLanguage: en-US Locale: ('en_US', 'cp1252') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2021.10.8 cftime: 1.5.1 charset-normalizer: 2.0.7 ChimeraX-AddCharge: 1.1.4 ChimeraX-AddH: 2.1.10 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.2.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.30.2 ChimeraX-AtomicLibrary: 4.1.4 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.0 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.6 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.1.1 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5 ChimeraX-CommandLine: 1.1.5 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.3.dev202110140902 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.1 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.5 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.1 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.4 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.3 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.4 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.2.2 ChimeraX-ModelPanel: 1.2 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.7 ChimeraX-PDB: 2.6.4 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.4.5 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.6 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.13.6 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 comtypes: 1.1.10 cxservices: 1.1 cycler: 0.10.0 Cython: 0.29.24 decorator: 5.1.0 docutils: 0.17.1 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 3.4.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.21 imagecodecs: 2021.4.28 imagesize: 1.2.0 ipykernel: 5.5.5 ipython: 7.23.1 ipython-genutils: 0.2.0 jedi: 0.18.0 Jinja2: 3.0.1 jupyter-client: 6.1.12 jupyter-core: 4.8.1 kiwisolver: 1.3.2 lxml: 4.6.3 lz4: 3.1.3 MarkupSafe: 2.0.1 matplotlib: 3.4.3 matplotlib-inline: 0.1.3 msgpack: 1.0.2 netCDF4: 1.5.7 networkx: 2.6.3 numexpr: 2.7.3 numpy: 1.21.2 openvr: 1.16.801 packaging: 21.0 ParmEd: 3.2.0 parso: 0.8.2 pickleshare: 0.7.5 Pillow: 8.3.2 pip: 21.2.4 pkginfo: 1.7.1 prompt-toolkit: 3.0.20 psutil: 5.8.0 pycollada: 0.7.1 pydicom: 2.1.2 Pygments: 2.10.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.2 pytz: 2021.3 pywin32: 228 pyzmq: 22.3.0 qtconsole: 5.1.1 QtPy: 1.11.2 RandomWords: 0.3.0 requests: 2.26.0 scipy: 1.7.1 Send2Trash: 1.8.0 SEQCROW: 1.3 setuptools: 57.5.0 sfftk-rw: 0.7.1 six: 1.16.0 snowballstemmer: 2.1.0 sortedcontainers: 2.4.0 Sphinx: 4.2.0 sphinx-autodoc-typehints: 1.12.0 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2021.4.8 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.1.0 urllib3: 1.26.7 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.0 wheel-filename: 1.3.0 WMI: 1.5.1 }}} " defect closed normal General Controls can't reproduce Tom Goddard all ChimeraX