id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 5339 Crash in garbage collection during new-object allocation bssfh@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Darwin-18.7.0-x86_64-i386-64bit ChimeraX Version: 1.1.1 (2020-10-07 08:32:49 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Process: ChimeraX [3783] Path: /Applications/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX Identifier: ChimeraX Version: 1.1.1 (1.1.1.0) Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: ChimeraX [3783] User ID: 501 Date/Time: 2021-10-04 17:58:13.450 +0100 OS Version: Mac OS X 10.14.6 (18G9216) Report Version: 12 Bridge OS Version: 5.4 (18P4663) Anonymous UUID: D1470C13-9DC6-B132-8B7B-61A3A3ABB5E2 Time Awake Since Boot: 14000 seconds System Integrity Protection: enabled Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread Exception Type: EXC_BAD_ACCESS (SIGSEGV) Exception Codes: KERN_INVALID_ADDRESS at 0x00000000000000a9 Exception Note: EXC_CORPSE_NOTIFY VM Regions Near 0xa9: --> __TEXT 000000010de91000-000000010de92000 [ 4K] r-x/r-x SM=COW /Applications/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread 0 libsystem_kernel.dylib 0x00007fff75a0f2c2 __pthread_kill + 10 1 libsystem_pthread.dylib 0x00007fff75acabf1 pthread_kill + 284 2 libsystem_c.dylib 0x00007fff7592cd8a raise + 26 3 libsystem_platform.dylib 0x00007fff75abfb5d _sigtramp + 29 4 ??? 000000000000000000 0 + 0 5 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60 2 QtWebEngineCore 0x0000000122daf32d 0x120c0d000 + 35267373 3 QtWebEngineCore 0x0000000122d63052 0x120c0d000 + 34955346 4 QtWebEngineCore 0x0000000122d8c085 0x120c0d000 + 35123333 5 QtWebEngineCore 0x0000000122dde9bc 0x120c0d000 + 35461564 6 QtWebEngineCore 0x0000000122e1e717 0x120c0d000 + 35723031 7 libsystem_pthread.dylib 0x00007fff75ac82eb _pthread_body + 126 8 libsystem_pthread.dylib 0x00007fff75acb249 _pthread_start + 66 9 libsystem_pthread.dylib 0x00007fff75ac740d thread_start + 13 Thread 18:: Chrome_ChildIOThread 0 libsystem_kernel.dylib 0x00007fff75a0f78a kevent + 10 1 QtWebEngineCore 0x00000001230709a9 0x120c0d000 + 38156713 2 QtWebEngineCore 0x000000012306dcbd 0x120c0d000 + 38145213 3 QtWebEngineCore 0x0000000122e24cdc 0x120c0d000 + 35749084 4 QtWebEngineCore 0x0000000122d8c085 0x120c0d000 + 35123333 5 QtWebEngineCore 0x0000000122dde9bc 0x120c0d000 + 35461564 6 QtWebEngineCore 0x0000000122e1e717 0x120c0d000 + 35723031 7 libsystem_pthread.dylib 0x00007fff75ac82eb _pthread_body + 126 8 libsystem_pthread.dylib 0x00007fff75acb249 _pthread_start + 66 9 libsystem_pthread.dylib 0x00007fff75ac740d thread_start + 13 Thread 19:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff75a0921a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff75a09768 mach_msg + 60 2 QtWebEngineCore 0x0000000122daf32d 0x120c0d000 + 35267373 3 QtWebEngineCore 0x0000000122daf22f 0x120c0d000 + 35267119 4 QtWebEngineCore 0x0000000122d6305d 0x120c0d000 + 34955357 5 QtWebEngineCore 0x0000000122d8c085 0x120c0d000 + 35123333 6 QtWebEngineCore 0x0000000122dde9bc 0x120c0d000 + 35461564 7 QtWebEngineCore 0x0000000122e1e717 0x120c0d000 + 35723031 8 libsystem_pthread.dylib 0x00007fff75ac82eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff75acb249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff75ac740d thread_start + 13 Thread 20:: TaskSchedulerSingleThreadForegroundBlocking1 0 libsystem_kernel.dylib 0x00007fff75a0921a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff75a09768 mach_msg + 60 2 QtWebEngineCore 0x0000000122daf32d 0x120c0d000 + 35267373 3 QtWebEngineCore 0x0000000122daf22f 0x120c0d000 + 35267119 4 QtWebEngineCore 0x0000000122dc6d1a 0x120c0d000 + 35364122 5 QtWebEngineCore 0x0000000122dc765b 0x120c0d000 + 35366491 6 QtWebEngineCore 0x0000000122dc7324 0x120c0d000 + 35365668 7 QtWebEngineCore 0x0000000122e1e717 0x120c0d000 + 35723031 8 libsystem_pthread.dylib 0x00007fff75ac82eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff75acb249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff75ac740d thread_start + 13 Thread 21:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff75a0921a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff75a09768 mach_msg + 60 2 QtWebEngineCore 0x0000000122daf32d 0x120c0d000 + 35267373 3 QtWebEngineCore 0x0000000122daf22f 0x120c0d000 + 35267119 4 QtWebEngineCore 0x0000000122d6305d 0x120c0d000 + 34955357 5 QtWebEngineCore 0x0000000122d8c085 0x120c0d000 + 35123333 6 QtWebEngineCore 0x0000000122dde9bc 0x120c0d000 + 35461564 7 QtWebEngineCore 0x0000000122e1e717 0x120c0d000 + 35723031 8 libsystem_pthread.dylib 0x00007fff75ac82eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff75acb249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff75ac740d thread_start + 13 Thread 22:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff75a0921a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff75a09768 mach_msg + 60 2 QtWebEngineCore 0x0000000122daf32d 0x120c0d000 + 35267373 3 QtWebEngineCore 0x0000000122daf22f 0x120c0d000 + 35267119 4 QtWebEngineCore 0x0000000122d6305d 0x120c0d000 + 34955357 5 QtWebEngineCore 0x0000000122d8c085 0x120c0d000 + 35123333 6 QtWebEngineCore 0x0000000122dde9bc 0x120c0d000 + 35461564 7 QtWebEngineCore 0x0000000122e1e717 0x120c0d000 + 35723031 8 libsystem_pthread.dylib 0x00007fff75ac82eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff75acb249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff75ac740d thread_start + 13 Thread 23:: TaskSchedulerBackgroundBlockingWorker 0 libsystem_kernel.dylib 0x00007fff75a0921a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff75a09768 mach_msg + 60 2 QtWebEngineCore 0x0000000122daf32d 0x120c0d000 + 35267373 3 QtWebEngineCore 0x0000000122daf421 0x120c0d000 + 35267617 4 QtWebEngineCore 0x0000000122dc6d28 0x120c0d000 + 35364136 5 QtWebEngineCore 0x0000000122dc765b 0x120c0d000 + 35366491 6 QtWebEngineCore 0x0000000122dc7234 0x120c0d000 + 35365428 7 QtWebEngineCore 0x0000000122e1e717 0x120c0d000 + 35723031 8 libsystem_pthread.dylib 0x00007fff75ac82eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff75acb249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff75ac740d thread_start + 13 Thread 24:: TaskSchedulerBackgroundBlockingWorker 0 libsystem_kernel.dylib 0x00007fff75a0921a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff75a09768 mach_msg + 60 2 QtWebEngineCore 0x0000000122daf32d 0x120c0d000 + 35267373 3 QtWebEngineCore 0x0000000122daf421 0x120c0d000 + 35267617 4 QtWebEngineCore 0x0000000122dc6d28 0x120c0d000 + 35364136 5 QtWebEngineCore 0x0000000122dc765b 0x120c0d000 + 35366491 6 QtWebEngineCore 0x0000000122dc7234 0x120c0d000 + 35365428 7 QtWebEngineCore 0x0000000122e1e717 0x120c0d000 + 35723031 8 libsystem_pthread.dylib 0x00007fff75ac82eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff75acb249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff75ac740d thread_start + 13 Thread 25:: TaskSchedulerForegroundBlockingWorker 0 libsystem_kernel.dylib 0x00007fff75a0921a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff75a09768 mach_msg + 60 2 QtWebEngineCore 0x0000000122daf32d 0x120c0d000 + 35267373 3 QtWebEngineCore 0x0000000122daf421 0x120c0d000 + 35267617 4 QtWebEngineCore 0x0000000122dc6d28 0x120c0d000 + 35364136 5 QtWebEngineCore 0x0000000122dc765b 0x120c0d000 + 35366491 6 QtWebEngineCore 0x0000000122dc72c4 0x120c0d000 + 35365572 7 QtWebEngineCore 0x0000000122e1e717 0x120c0d000 + 35723031 8 libsystem_pthread.dylib 0x00007fff75ac82eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff75acb249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff75ac740d thread_start + 13 Thread 26:: TaskSchedulerForegroundWorker 0 libsystem_kernel.dylib 0x00007fff75a0921a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff75a09768 mach_msg + 60 2 QtWebEngineCore 0x0000000122daf32d 0x120c0d000 + 35267373 3 QtWebEngineCore 0x0000000122daf421 0x120c0d000 + 35267617 4 QtWebEngineCore 0x0000000122dc6d28 0x120c0d000 + 35364136 5 QtWebEngineCore 0x0000000122dc765b 0x120c0d000 + 35366491 6 QtWebEngineCore 0x0000000122dc72c4 0x120c0d000 + 35365572 7 QtWebEngineCore 0x0000000122e1e717 0x120c0d000 + 35723031 8 libsystem_pthread.dylib 0x00007fff75ac82eb _pthread_body + 126 9 libsystem_pthread.dylib 0x00007fff75acb249 _pthread_start + 66 10 libsystem_pthread.dylib 0x00007fff75ac740d thread_start + 13 Thread 27: 0 libsystem_pthread.dylib 0x00007fff75ac73f0 start_wqthread + 0 Thread 28: 0 libsystem_pthread.dylib 0x00007fff75ac73f0 start_wqthread + 0 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x00000001164e25c0 rcx: 0x000000010e34ca48 rdx: 0x0000000000000000 rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x000000010e34ca80 rsp: 0x000000010e34ca48 r8: 0x000000010e34cf48 r9: 0x1aa25287d5d24329 r10: 0x00000001164e266c r11: 0x0000000000000287 r12: 0x0000000000000307 r13: 0x000000012ba35790 r14: 0x000000000000000b r15: 0x000000000000002d rip: 0x00007fff75a0f2c2 rfl: 0x0000000000000286 cr2: 0x000000010e0f9fa4 Logical CPU: 0 Error Code: 0x02000148 Trap Number: 133 Binary Images: 0x10de91000 - 0x10de91ff3 +edu.ucsf.cgl.ChimeraX (1.1.1 - 1.1.1.0) /Applications/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX 0x10de9b000 - 0x10e096fff +org.python.python (3.7.8, [c] 2001-2019 Python Software Foundation. - 3.7.8) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/Python 0x10e512000 - 0x10e513ff7 +_heapq.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_heapq.cpython-37m-darwin.so 0x10e5dc000 - 0x10e5dfff3 +zlib.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/zlib.cpython-37m-darwin.so 0x10e5e9000 - 0x10e5fdff7 +libz.1.2.11.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/libz.1.2.11.dylib 0x10e652000 - 0x10e653ff7 +_bz2.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_bz2.cpython-37m-darwin.so 0x10e65c000 - 0x10e65ffff +_lzma.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_lzma.cpython-37m-darwin.so 0x10e66a000 - 0x10e66affb +grp.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/grp.cpython-37m-darwin.so 0x10e6b2000 - 0x10e6b7ffb +math.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/math.cpython-37m-darwin.so 0x10e6c3000 - 0x10e6c5ff3 +_hashlib.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_hashlib.cpython-37m-darwin.so 0x10e6cf000 - 0x10e72cff7 +libssl.1.1.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/libssl.1.1.dylib 0x10e75b000 - 0x10e922b13 +libcrypto.1.1.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/libcrypto.1.1.dylib 0x10e9bb000 - 0x10e9c0ff3 +_blake2.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_blake2.cpython-37m-darwin.so 0x10e9ca000 - 0x10e9daff7 +_sha3.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_sha3.cpython-37m-darwin.so 0x10e9e5000 - 0x10e9e5ffb +_bisect.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_bisect.cpython-37m-darwin.so 0x10e9ed000 - 0x10e9eeffb +_random.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_random.cpython-37m-darwin.so 0x10eaff000 - 0x10eb05ffb +_json.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_json.cpython-37m-darwin.so 0x10eb4e000 - 0x10eb5bff7 +_ssl.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_ssl.cpython-37m-darwin.so 0x10eb71000 - 0x10eb7affb +_socket.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_socket.cpython-37m-darwin.so 0x10ebcc000 - 0x10ebcffff +select.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/select.cpython-37m-darwin.so 0x10ebda000 - 0x10ebdeffb +_struct.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_struct.cpython-37m-darwin.so 0x10ebec000 - 0x10ebf0ff7 +binascii.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/binascii.cpython-37m-darwin.so 0x10ecf9000 - 0x10ed07ff3 +_datetime.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_datetime.cpython-37m-darwin.so 0x10ed57000 - 0x10ed57ff3 +_scproxy.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_scproxy.cpython-37m-darwin.so 0x10ed5f000 - 0x10ed9dff7 +_decimal.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_decimal.cpython-37m-darwin.so 0x10ee01000 - 0x10ee2eff3 +pyexpat.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/pyexpat.cpython-37m-darwin.so 0x10ee46000 - 0x10ee47ff3 +_queue.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_queue.cpython-37m-darwin.so 0x10eed1000 - 0x10eed2fff +lapack_lite.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/linalg/lapack_lite.cpython-37m-darwin.so 0x10ef1d000 - 0x10ef1efff +_posixsubprocess.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_posixsubprocess.cpython-37m-darwin.so 0x10eff7000 - 0x10f009fff +_pickle.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_pickle.cpython-37m-darwin.so 0x10f08c000 - 0x10f08fffb +_csv.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_csv.cpython-37m-darwin.so 0x10f21a000 - 0x10f57dfe7 +_multiarray_umath.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/_multiarray_umath.cpython-37m-darwin.so 0x10f6a3000 - 0x11310eae7 +libopenblasp-r0.3.7.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/python3.7/site-packages/numpy/.dylibs/libopenblasp-r0.3.7.dylib 0x113418000 - 0x11352fff7 +libgfortran.3.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/python3.7/site-packages/numpy/.dylibs/libgfortran.3.dylib 0x11359d000 - 0x1135d3fff +libquadmath.0.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/python3.7/site-packages/numpy/.dylibs/libquadmath.0.dylib 0x1135e7000 - 0x1135fcff7 +libgcc_s.1.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/python3.7/site-packages/numpy/.dylibs/libgcc_s.1.dylib 0x11579e000 - 0x1157abff3 +_multiarray_tests.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/_multiarray_tests.cpython-37m-darwin.so 0x1157c1000 - 0x1157d3ff7 +_ctypes.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_ctypes.cpython-37m-darwin.so 0x115869000 - 0x115882ffb +_umath_linalg.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/linalg/_umath_linalg.cpython-37m-darwin.so 0x115956000 - 0x115967ffb +_pocketfft_internal.cpython-37m-darwin.so (0) 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0x7fff701f6fff com.apple.private.SystemPolicy (1.0 - 1) /System/Library/PrivateFrameworks/SystemPolicy.framework/Versions/A/SystemPolicy 0x7fff701fb000 - 0x7fff70207ffb com.apple.TCC (1.0 - 1) /System/Library/PrivateFrameworks/TCC.framework/Versions/A/TCC 0x7fff7046d000 - 0x7fff70535ff3 com.apple.TextureIO (3.8.4 - 3.8.1) /System/Library/PrivateFrameworks/TextureIO.framework/Versions/A/TextureIO 0x7fff705eb000 - 0x7fff705ecfff com.apple.TrustEvaluationAgent (2.0 - 31.200.1) /System/Library/PrivateFrameworks/TrustEvaluationAgent.framework/Versions/A/TrustEvaluationAgent 0x7fff705f2000 - 0x7fff707aaffb com.apple.UIFoundation (1.0 - 551.5) /System/Library/PrivateFrameworks/UIFoundation.framework/Versions/A/UIFoundation 0x7fff71426000 - 0x7fff714fffff com.apple.ViewBridge (407 - 407) /System/Library/PrivateFrameworks/ViewBridge.framework/Versions/A/ViewBridge 0x7fff71cd7000 - 0x7fff71cdafff com.apple.dt.XCTTargetBootstrap (1.0 - 14490.66) /System/Library/PrivateFrameworks/XCTTargetBootstrap.framework/Versions/A/XCTTargetBootstrap 0x7fff720db000 - 0x7fff720ddffb com.apple.loginsupport (1.0 - 1) /System/Library/PrivateFrameworks/login.framework/Versions/A/Frameworks/loginsupport.framework/Versions/A/loginsupport 0x7fff720de000 - 0x7fff720f3fff com.apple.login (3.0 - 3.0) /System/Library/PrivateFrameworks/login.framework/Versions/A/login 0x7fff723a7000 - 0x7fff723dbfff libCRFSuite.dylib (41.15.4) /usr/lib/libCRFSuite.dylib 0x7fff723de000 - 0x7fff723e8ff7 libChineseTokenizer.dylib (28.15.3) /usr/lib/libChineseTokenizer.dylib 0x7fff723e9000 - 0x7fff72472fff libCoreStorage.dylib (546.50.1) /usr/lib/libCoreStorage.dylib 0x7fff72476000 - 0x7fff72477ffb libDiagnosticMessagesClient.dylib (107) /usr/lib/libDiagnosticMessagesClient.dylib 0x7fff724ae000 - 0x7fff72705ff3 libFosl_dynamic.dylib (18.3.4) /usr/lib/libFosl_dynamic.dylib 0x7fff72725000 - 0x7fff7272cfff libMatch.1.dylib (31.200.1) /usr/lib/libMatch.1.dylib 0x7fff72756000 - 0x7fff72775fff libMobileGestalt.dylib (645.270.1) /usr/lib/libMobileGestalt.dylib 0x7fff72776000 - 0x7fff72776fff libOpenScriptingUtil.dylib (179.1) /usr/lib/libOpenScriptingUtil.dylib 0x7fff728b6000 - 0x7fff728b7ffb libSystem.B.dylib (1252.250.1) /usr/lib/libSystem.B.dylib 0x7fff72933000 - 0x7fff72934fff libThaiTokenizer.dylib (2.15.1) /usr/lib/libThaiTokenizer.dylib 0x7fff72946000 - 0x7fff7295cffb libapple_nghttp2.dylib (1.24.1) /usr/lib/libapple_nghttp2.dylib 0x7fff7295d000 - 0x7fff72986ffb libarchive.2.dylib (54.250.1) /usr/lib/libarchive.2.dylib 0x7fff72987000 - 0x7fff72a06fff libate.dylib (1.13.8) /usr/lib/libate.dylib 0x7fff72a0a000 - 0x7fff72a0aff3 libauto.dylib (187) /usr/lib/libauto.dylib 0x7fff72adc000 - 0x7fff72aecffb libbsm.0.dylib (39.200.18) /usr/lib/libbsm.0.dylib 0x7fff72aed000 - 0x7fff72afafff libbz2.1.0.dylib (38.200.3) /usr/lib/libbz2.1.0.dylib 0x7fff72afb000 - 0x7fff72b4eff7 libc++.1.dylib (400.9.4) /usr/lib/libc++.1.dylib 0x7fff72b4f000 - 0x7fff72b64ff7 libc++abi.dylib (400.17) /usr/lib/libc++abi.dylib 0x7fff72b65000 - 0x7fff72b65ff3 libcharset.1.dylib (51.200.6) /usr/lib/libcharset.1.dylib 0x7fff72b66000 - 0x7fff72b76ffb libcmph.dylib (6.15.1) /usr/lib/libcmph.dylib 0x7fff72b77000 - 0x7fff72b8fffb libcompression.dylib (52.250.2) /usr/lib/libcompression.dylib 0x7fff72e04000 - 0x7fff72e1afff libcoretls.dylib (155.220.1) /usr/lib/libcoretls.dylib 0x7fff72e1b000 - 0x7fff72e1cff3 libcoretls_cfhelpers.dylib (155.220.1) /usr/lib/libcoretls_cfhelpers.dylib 0x7fff72fba000 - 0x7fff730b2ff7 libcrypto.35.dylib (22.260.1) /usr/lib/libcrypto.35.dylib 0x7fff732b5000 - 0x7fff732c0ff7 libcsfde.dylib (546.50.1) /usr/lib/libcsfde.dylib 0x7fff732c8000 - 0x7fff7331eff3 libcups.2.dylib (462.16) /usr/lib/libcups.2.dylib 0x7fff73453000 - 0x7fff73453fff libenergytrace.dylib (17.200.1) /usr/lib/libenergytrace.dylib 0x7fff73454000 - 0x7fff7346dffb libexpat.1.dylib (16.1.2) /usr/lib/libexpat.1.dylib 0x7fff73485000 - 0x7fff7348aff7 libgermantok.dylib (17.15.2) /usr/lib/libgermantok.dylib 0x7fff7348b000 - 0x7fff73490ff7 libheimdal-asn1.dylib (520.270.7) /usr/lib/libheimdal-asn1.dylib 0x7fff734bb000 - 0x7fff735abfff libiconv.2.dylib (51.200.6) /usr/lib/libiconv.2.dylib 0x7fff735ac000 - 0x7fff7380dffb libicucore.A.dylib (62141.0.1) /usr/lib/libicucore.A.dylib 0x7fff7385a000 - 0x7fff7385bfff liblangid.dylib (128.15.1) /usr/lib/liblangid.dylib 0x7fff7385c000 - 0x7fff73874ff3 liblzma.5.dylib (10.200.3) /usr/lib/liblzma.5.dylib 0x7fff7388c000 - 0x7fff73930ff7 libmecab.1.0.0.dylib (779.24.1) /usr/lib/libmecab.1.0.0.dylib 0x7fff73931000 - 0x7fff73b35fff libmecabra.dylib (779.24.1) /usr/lib/libmecabra.dylib 0x7fff73d0d000 - 0x7fff7405eff7 libnetwork.dylib (1229.250.15) /usr/lib/libnetwork.dylib 0x7fff740f0000 - 0x7fff74875fdf libobjc.A.dylib (756.2) /usr/lib/libobjc.A.dylib 0x7fff74887000 - 0x7fff7488bffb libpam.2.dylib (22.200.1) /usr/lib/libpam.2.dylib 0x7fff7488e000 - 0x7fff748c3fff libpcap.A.dylib (79.250.4) /usr/lib/libpcap.A.dylib 0x7fff749dc000 - 0x7fff749f4ffb libresolv.9.dylib (65.200.3) /usr/lib/libresolv.9.dylib 0x7fff749f6000 - 0x7fff74a31ff3 libsandbox.1.dylib (851.270.5) /usr/lib/libsandbox.1.dylib 0x7fff74a45000 - 0x7fff74a46ff7 libspindump.dylib (267.3) /usr/lib/libspindump.dylib 0x7fff74a47000 - 0x7fff74c24fff libsqlite3.dylib (274.26) /usr/lib/libsqlite3.dylib 0x7fff74e3d000 - 0x7fff74e40ff7 libutil.dylib (51.200.4) /usr/lib/libutil.dylib 0x7fff74e41000 - 0x7fff74e4efff libxar.1.dylib (417.1) /usr/lib/libxar.1.dylib 0x7fff74e53000 - 0x7fff74f36fff libxml2.2.dylib (32.19) /usr/lib/libxml2.2.dylib 0x7fff74f37000 - 0x7fff74f5fff3 libxslt.1.dylib (16.7.2) /usr/lib/libxslt.1.dylib 0x7fff74f60000 - 0x7fff74f72ff7 libz.1.dylib (70.200.4) /usr/lib/libz.1.dylib 0x7fff75756000 - 0x7fff7575aff3 libcache.dylib (81) /usr/lib/system/libcache.dylib 0x7fff7575b000 - 0x7fff75765ff3 libcommonCrypto.dylib (60118.250.2) /usr/lib/system/libcommonCrypto.dylib 0x7fff75766000 - 0x7fff7576dff7 libcompiler_rt.dylib (63.4) /usr/lib/system/libcompiler_rt.dylib 0x7fff7576e000 - 0x7fff75777ff7 libcopyfile.dylib (146.250.1) /usr/lib/system/libcopyfile.dylib 0x7fff75778000 - 0x7fff757fdfff libcorecrypto.dylib (602.260.3) /usr/lib/system/libcorecrypto.dylib 0x7fff75884000 - 0x7fff758bdff7 libdispatch.dylib (1008.270.1) /usr/lib/system/libdispatch.dylib 0x7fff758be000 - 0x7fff758eaff7 libdyld.dylib (655.1.1) /usr/lib/system/libdyld.dylib 0x7fff758eb000 - 0x7fff758ebffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib 0x7fff758ec000 - 0x7fff758f8ff3 libkxld.dylib (4903.278.68) /usr/lib/system/libkxld.dylib 0x7fff758f9000 - 0x7fff758f9ff7 liblaunch.dylib (1336.261.7) /usr/lib/system/liblaunch.dylib 0x7fff758fa000 - 0x7fff758fffff libmacho.dylib (927.0.3) /usr/lib/system/libmacho.dylib 0x7fff75900000 - 0x7fff75902ff7 libquarantine.dylib (86.270.1) /usr/lib/system/libquarantine.dylib 0x7fff75903000 - 0x7fff75904ff7 libremovefile.dylib (45.200.2) /usr/lib/system/libremovefile.dylib 0x7fff75905000 - 0x7fff7591cff3 libsystem_asl.dylib (356.200.4) /usr/lib/system/libsystem_asl.dylib 0x7fff7591d000 - 0x7fff7591dff7 libsystem_blocks.dylib (73) /usr/lib/system/libsystem_blocks.dylib 0x7fff7591e000 - 0x7fff759a5fff libsystem_c.dylib (1272.250.1) /usr/lib/system/libsystem_c.dylib 0x7fff759a6000 - 0x7fff759a9ffb libsystem_configuration.dylib (963.270.3) /usr/lib/system/libsystem_configuration.dylib 0x7fff759aa000 - 0x7fff759adff7 libsystem_coreservices.dylib (66.1) /usr/lib/system/libsystem_coreservices.dylib 0x7fff759ae000 - 0x7fff759b4fff libsystem_darwin.dylib (1272.250.1) /usr/lib/system/libsystem_darwin.dylib 0x7fff759b5000 - 0x7fff759bbffb libsystem_dnssd.dylib (878.270.3) /usr/lib/system/libsystem_dnssd.dylib 0x7fff759bc000 - 0x7fff75a07ffb libsystem_info.dylib (517.200.9) /usr/lib/system/libsystem_info.dylib 0x7fff75a08000 - 0x7fff75a30ff7 libsystem_kernel.dylib (4903.278.68) /usr/lib/system/libsystem_kernel.dylib 0x7fff75a31000 - 0x7fff75a7cff7 libsystem_m.dylib (3158.200.7) /usr/lib/system/libsystem_m.dylib 0x7fff75a7d000 - 0x7fff75aa7fff libsystem_malloc.dylib (166.270.1) /usr/lib/system/libsystem_malloc.dylib 0x7fff75aa8000 - 0x7fff75ab2ff7 libsystem_networkextension.dylib (767.250.2) /usr/lib/system/libsystem_networkextension.dylib 0x7fff75ab3000 - 0x7fff75abafff libsystem_notify.dylib (172.200.21) /usr/lib/system/libsystem_notify.dylib 0x7fff75abb000 - 0x7fff75ac4fef libsystem_platform.dylib (177.270.1) /usr/lib/system/libsystem_platform.dylib 0x7fff75ac5000 - 0x7fff75acfff7 libsystem_pthread.dylib (330.250.2) /usr/lib/system/libsystem_pthread.dylib 0x7fff75ad0000 - 0x7fff75ad3ff7 libsystem_sandbox.dylib (851.270.5) /usr/lib/system/libsystem_sandbox.dylib 0x7fff75ad4000 - 0x7fff75ad6ff3 libsystem_secinit.dylib (30.260.2) /usr/lib/system/libsystem_secinit.dylib 0x7fff75ad7000 - 0x7fff75adeff3 libsystem_symptoms.dylib (820.267.2) /usr/lib/system/libsystem_symptoms.dylib 0x7fff75adf000 - 0x7fff75af4ff7 libsystem_trace.dylib (906.260.3) /usr/lib/system/libsystem_trace.dylib 0x7fff75af6000 - 0x7fff75afbffb libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib 0x7fff75afc000 - 0x7fff75b2bfff libxpc.dylib (1336.261.7) /usr/lib/system/libxpc.dylib External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 216 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 115752 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=723.0M resident=0K(0%) swapped_out_or_unallocated=723.0M(100%) Writable regions: Total=2.3G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.3G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 512K 4 Activity Tracing 256K 1 CG backing stores 2920K 3 CG image 184K 18 CoreAnimation 212K 19 CoreGraphics 8K 1 CoreImage 52K 5 CoreUI image data 3076K 32 CoreUI image file 424K 7 Foundation 4K 1 Kernel Alloc Once 8K 1 MALLOC 1.6G 188 MALLOC guard page 32K 8 MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated) MALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated) Memory Tag 242 12K 1 OpenGL GLSL 512K 6 PROTECTED_MEMORY 4K 1 STACK GUARD 112K 28 Stack 172.2M 29 Stack Guard 56.0M 1 VM_ALLOCATE 227.5M 218 VM_ALLOCATE (reserved) 96.0M 1 reserved VM address space (unallocated) __DATA 82.8M 483 __FONT_DATA 4K 1 __GLSLBUILTINS 5176K 1 __LINKEDIT 247.1M 143 __TEXT 475.9M 453 __UNICODE 564K 1 mapped file 171.6M 45 shared memory 664K 19 =========== ======= ======= TOTAL 3.3G 1721 TOTAL, minus reserved VM space 3.0G 1721 Log: UCSF ChimeraX version: 1.1.1 (2020-10-07) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 ATI-2.11.25 OpenGL renderer: AMD Radeon Pro 555X OpenGL Engine OpenGL vendor: ATI Technologies Inc.Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro15,1 Processor Name: Intel Core i7 Processor Speed: 2.2 GHz Number of Processors: 1 Total Number of Cores: 6 L2 Cache (per Core): 256 KB L3 Cache: 9 MB Hyper-Threading Technology: Enabled Memory: 16 GB Boot ROM Version: 1554.120.19.0.0 (iBridge: 18.16.14663.0.0,0) Software: System Software Overview: System Version: macOS 10.14.6 (18G9216) Kernel Version: Darwin 18.7.0 Time since boot: 13:44 Graphics/Displays: Radeon Pro 555X: Chipset Model: Radeon Pro 555X Type: GPU Bus: PCIe PCIe Lane Width: x8 VRAM (Total): 4 GB Vendor: AMD (0x1002) Device ID: 0x67ef Revision ID: 0x00e3 ROM Revision: 113-C980AL-075 VBIOS Version: 113-C97501P-005 EFI Driver Version: 01.A1.075 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal: Supported, feature set macOS GPUFamily2 v1 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2880 x 1800 Retina Framebuffer Depth: 24-Bit Color (ARGB8888) Mirror: Off Online: Yes Rotation: Supported Automatically Adjust Brightness: No PLG2888UH: Resolution: 5120 x 2880 (5K/UHD+ - Ultra High Definition Plus) UI Looks like: 2560 x 1440 @ 60 Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Automatically Adjust Brightness: No Connection Type: DisplayPort Intel UHD Graphics 630: Chipset Model: Intel UHD Graphics 630 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x3e9b Revision ID: 0x0000 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal: Supported, feature set macOS GPUFamily2 v1 PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.9 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.0 Babel: 2.8.0 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2020.6.20 chardet: 3.0.4 ChimeraX-AddH: 2.1.3 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.1 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.6.1 ChimeraX-AtomSearch: 2.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 1.0.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.0 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.0 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.1 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.0 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-CommandLine: 1.1.3 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.1.1 ChimeraX-CoreFormats: 1.0 ChimeraX-coulombic: 1.0.1 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-DataFormats: 1.0 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.0 ChimeraX-Hbonds: 2.0 ChimeraX-Help: 1.0 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.0 ChimeraX-ImageFormats: 1.0 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0 ChimeraX-Label: 1.0 ChimeraX-ListInfo: 1.0 ChimeraX-Log: 1.1.1 ChimeraX-LookingGlass: 1.1 ChimeraX-Map: 1.0.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.0 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 1.1 ChimeraX-MDcrds: 2.0 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.0 ChimeraX-mmCIF: 2.2 ChimeraX-MMTF: 2.0 ChimeraX-Modeller: 1.0 ChimeraX-ModelPanel: 1.0 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.0 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0 ChimeraX-OpenCommand: 1.2.1 ChimeraX-PDB: 2.1 ChimeraX-PDBBio: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0 ChimeraX-PubChem: 2.0 ChimeraX-Read-Pbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.0 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.2 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SeqView: 2.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.0 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.0 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.0.4 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.0 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.0 ChimeraX-ToolshedUtils: 1.0 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.2.3 ChimeraX-uniprot: 2.0 ChimeraX-ViewDockX: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.3 comtypes: 1.1.7 cxservices: 1.0 cycler: 0.10.0 Cython: 0.29.20 decorator: 4.4.2 distlib: 0.3.1 docutils: 0.16 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 2.10.0 html2text: 2020.1.16 idna: 2.10 ihm: 0.16 imagecodecs: 2020.5.30 imagecodecs-lite: 2020.1.31 imagesize: 1.2.0 ipykernel: 5.3.0 ipython: 7.15.0 ipython-genutils: 0.2.0 jedi: 0.17.2 Jinja2: 2.11.2 jupyter-client: 6.1.3 jupyter-core: 4.6.3 kiwisolver: 1.2.0 line-profiler: 2.1.2 lxml: 4.5.1 MarkupSafe: 1.1.1 matplotlib: 3.2.1 msgpack: 1.0.0 netifaces: 0.10.9 networkx: 2.4 numexpr: 2.7.1 numpy: 1.18.5 numpydoc: 1.0.0 openvr: 1.12.501 packaging: 20.4 parso: 0.7.1 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 7.1.2 pip: 20.2.2 pkginfo: 1.5.0.1 prompt-toolkit: 3.0.7 psutil: 5.7.0 ptyprocess: 0.6.0 pycollada: 0.7.1 pydicom: 2.0.0 Pygments: 2.6.1 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.12.3 PyQt5-sip: 4.19.19 PyQtWebEngine-commercial: 5.12.1 python-dateutil: 2.8.1 pytz: 2020.1 pyzmq: 19.0.2 qtconsole: 4.7.4 QtPy: 1.9.0 RandomWords: 0.3.0 requests: 2.24.0 scipy: 1.4.1 setuptools: 49.4.0 sfftk-rw: 0.6.6.dev0 six: 1.15.0 snowballstemmer: 2.0.0 sortedcontainers: 2.2.2 Sphinx: 3.1.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 1.0.3 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.4 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2020.6.3 tinyarray: 1.2.2 tornado: 6.0.4 traitlets: 5.0.4 urllib3: 1.25.10 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.34.2 }}} " defect closed normal Core duplicate Tom Goddard all ChimeraX