id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 5293 Crash opening EM map batras@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.3.dev202109212024 (2021-09-21 20:24:53 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Process: ChimeraX [52610] Path: /Users/USER/Desktop/ChimeraX_Daily.app/Contents/MacOS/ChimeraX Identifier: edu.ucsf.cgl.ChimeraX Version: 1.3.0 (1.3.0.0) Code Type: X86-64 (Translated) Parent Process: ??? [1] Responsible: ChimeraX [52610] User ID: 577608920 Date/Time: 2021-09-26 18:06:38.860 -0400 OS Version: macOS 11.4 (20F71) Report Version: 12 Anonymous UUID: AC065571-7C7E-072E-F18E-FE5FC0B3BF14 Sleep/Wake UUID: CF1AADB7-E929-4A98-A525-CC9B632F4C00 Time Awake Since Boot: 380000 seconds Time Since Wake: 7000 seconds System Integrity Protection: enabled Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread Exception Type: EXC_BAD_ACCESS (SIGSEGV) Exception Codes: KERN_INVALID_ADDRESS at 0x0000724ceb9ea990 Exception Note: EXC_CORPSE_NOTIFY VM Regions Near 0x724ceb9ea990: MALLOC_NANO 600058000000-600060000000 [128.0M] rw-/rwx SM=PRV --> MALLOC_LARGE 7fa166c00000-7fa1696e4000 [ 42.9M] rw-/rwx SM=PRV Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread 0 ??? 0x00007ffe9431eab8 ??? 1 libsystem_kernel.dylib 0x00007fff2033392e __pthread_kill + 10 2 libsystem_c.dylib 0x00007fff20246be5 raise + 26 3 libsystem_platform.dylib 0x00007fff203a7d7d _sigtramp + 29 4 ??? 000000000000000000 0 + 0 5 ??? 0x00007fa258fa6c70 ??? Thread 1:: com.apple.rosetta.exceptionserver 0 runtime 0x00007ffdffe90858 0x7ffdffe8f000 + 6232 1 runtime 0x00007ffdffe9ad50 0x7ffdffe8f000 + 48464 2 runtime 0x00007ffdffe9ba20 0x7ffdffe8f000 + 51744 Thread 2: 0 ??? 0x00007ffe9431eab8 ??? 1 libsystem_kernel.dylib 0x00007fff2032d3c2 swtch_pri + 10 2 libopenblas.0.dylib 0x000000010afc9a4b blas_thread_server + 123 3 libsystem_pthread.dylib 0x00007fff203628fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2035e443 thread_start + 15 Thread 3: 0 ??? 0x00007ffe9431eab8 ??? 1 libsystem_kernel.dylib 0x00007fff2032d3c2 swtch_pri + 10 2 libopenblas.0.dylib 0x000000010afc9a4b blas_thread_server + 123 3 libsystem_pthread.dylib 0x00007fff203628fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2035e443 thread_start + 15 Thread 4: 0 ??? 0x00007ffe9431eab8 ??? 1 libsystem_kernel.dylib 0x00007fff2032fcde __psynch_cvwait + 10 2 libopenblas.0.dylib 0x000000010afc9a9f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff203628fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2035e443 thread_start + 15 Thread 5: 0 ??? 0x00007ffe9431eab8 ??? 1 libsystem_kernel.dylib 0x00007fff2032fcde __psynch_cvwait + 10 2 libopenblas.0.dylib 0x000000010afc9a9f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff203628fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2035e443 thread_start + 15 Thread 6: 0 ??? 0x00007ffe9431eab8 ??? 1 libsystem_kernel.dylib 0x00007fff2032fcde __psynch_cvwait + 10 2 libopenblas.0.dylib 0x000000010afc9a9f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff203628fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2035e443 thread_start + 15 Thread 7: 0 ??? 0x00007ffe9431eab8 ??? 1 libsystem_kernel.dylib 0x00007fff2032fcde __psynch_cvwait + 10 2 libopenblas.0.dylib 0x000000010afc9a9f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff203628fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2035e443 thread_start + 15 Thread 8: 0 ??? 0x00007ffe9431eab8 ??? 1 libsystem_kernel.dylib 0x00007fff2032fcde __psynch_cvwait + 10 2 libopenblas.0.dylib 0x000000010afc9a9f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff203628fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2035e443 thread_start + 15 Thread 9:: ThreadPoolServiceThread 0 ??? 0x00007ffe9431eab8 ??? 1 libsystem_kernel.dylib 0x00007fff203361d2 kevent64 + 10 2 QtWebEngineCore 0x000000012acabcc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167 3 QtWebEngineCore 0x000000012ac3462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 4 QtWebEngineCore 0x000000012abf87cb base::RunLoop::Run() + 395 5 QtWebEngineCore 0x000000012ac3fa94 base::internal::ServiceThread::Run(base::RunLoop*) + 20 6 QtWebEngineCore 0x000000012ac53a7d base::Thread::ThreadMain() + 413 7 QtWebEngineCore 0x000000012ac9ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff203628fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff2035e443 thread_start + 15 Thread 10:: ThreadPoolBackgroundWorker 0 ??? 0x00007ffe9431eab8 ??? 1 libsystem_kernel.dylib 0x00007fff2032d2ba mach_msg_trap + 10 2 QtWebEngineCore 0x000000012aca1492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000012ac49778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x000000012ac4a150 base::internal::WorkerThread::RunWorker() + 1024 5 QtWebEngineCore 0x000000012ac49c44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20 6 QtWebEngineCore 0x000000012ac9ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff203628fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2035e443 thread_start + 15 Thread 11:: Chrome_IOThread 0 ??? 0x00007ffe9431eab8 ??? 1 libsystem_kernel.dylib 0x00007fff203361d2 kevent64 + 10 2 QtWebEngineCore 0x000000012acabcc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167 3 QtWebEngineCore 0x000000012ac3462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 4 QtWebEngineCore 0x000000012abf87cb base::RunLoop::Run() + 395 5 QtWebEngineCore 0x000000012eb78f06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102 6 QtWebEngineCore 0x000000012ac53a7d base::Thread::ThreadMain() + 413 7 QtWebEngineCore 0x000000012ac9ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff203628fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff2035e443 thread_start + 15 Thread 12:: NetworkConfigWatcher 0 ??? 0x00007ffe9431eab8 ??? 1 libsystem_kernel.dylib 0x00007fff2032d2ba mach_msg_trap + 10 2 QtWebEngineCore 0x000000012aca1492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000012aca12cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000012abc91db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x000000012ac3462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x000000012abf87cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x000000012ac53a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x000000012ac9ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff203628fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff2035e443 thread_start + 15 Thread 13:: CompositorTileWorker1 0 ??? 0x00007ffe9431eab8 ??? 1 libsystem_kernel.dylib 0x00007fff2032fcde __psynch_cvwait + 10 2 QtWebEngineCore 0x000000012ac98e18 base::ConditionVariable::Wait() + 104 3 QtWebEngineCore 0x000000012bf505f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56 4 QtWebEngineCore 0x000000012ac9ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87 5 libsystem_pthread.dylib 0x00007fff203628fc _pthread_start + 224 6 libsystem_pthread.dylib 0x00007fff2035e443 thread_start + 15 Thread 14:: Chrome_InProcGpuThread 0 ??? 0x00007ffe9431eab8 ??? 1 libsystem_kernel.dylib 0x00007fff2032d2ba mach_msg_trap + 10 2 QtWebEngineCore 0x000000012aca1492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000012abc920f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223 4 QtWebEngineCore 0x000000012ac3462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 5 QtWebEngineCore 0x000000012abf87cb base::RunLoop::Run() + 395 6 QtWebEngineCore 0x000000012ac53a7d base::Thread::ThreadMain() + 413 7 QtWebEngineCore 0x000000012ac9ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff203628fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff2035e443 thread_start + 15 Thread 15:: Chrome_ChildIOThread 0 ??? 0x00007ffe9431eab8 ??? 1 libsystem_kernel.dylib 0x00007fff203361d2 kevent64 + 10 2 QtWebEngineCore 0x000000012acabcc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167 3 QtWebEngineCore 0x000000012ac3462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 4 QtWebEngineCore 0x000000012abf87cb base::RunLoop::Run() + 395 5 QtWebEngineCore 0x000000012ac53a7d base::Thread::ThreadMain() + 413 6 QtWebEngineCore 0x000000012ac9ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff203628fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2035e443 thread_start + 15 Thread 16:: NetworkConfigWatcher 0 ??? 0x00007ffe9431eab8 ??? 1 libsystem_kernel.dylib 0x00007fff2032d2ba mach_msg_trap + 10 2 QtWebEngineCore 0x000000012aca1492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000012aca12cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000012abc91db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x000000012ac3462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x000000012abf87cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x000000012ac53a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x000000012ac9ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff203628fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff2035e443 thread_start + 15 Thread 17:: VizCompositorThread 0 ??? 0x00007ffe9431eab8 ??? 1 libsystem_kernel.dylib 0x00007fff2032d2ba mach_msg_trap + 10 2 QtWebEngineCore 0x000000012aca1492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000012abc920f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223 4 QtWebEngineCore 0x000000012ac3462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 5 QtWebEngineCore 0x000000012abf87cb base::RunLoop::Run() + 395 6 QtWebEngineCore 0x000000012ac53a7d base::Thread::ThreadMain() + 413 7 QtWebEngineCore 0x000000012ac9ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff203628fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff2035e443 thread_start + 15 Thread 18:: NetworkConfigWatcher 0 ??? 0x00007ffe9431eab8 ??? 1 libsystem_kernel.dylib 0x00007fff2032d2ba mach_msg_trap + 10 2 QtWebEngineCore 0x000000012aca1492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000012aca12cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000012abc91db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x000000012ac3462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x000000012abf87cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x000000012ac53a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x000000012ac9ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff203628fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff2035e443 thread_start + 15 Thread 19:: ThreadPoolSingleThreadForegroundBlocking0 0 ??? 0x00007ffe9431eab8 ??? 1 libsystem_kernel.dylib 0x00007fff2032d2ba mach_msg_trap + 10 2 QtWebEngineCore 0x000000012aca1492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000012aca12cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000012ac4976a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42 5 QtWebEngineCore 0x000000012ac4a150 base::internal::WorkerThread::RunWorker() + 1024 6 QtWebEngineCore 0x000000012ac49d34 base::internal::WorkerThread::RunDedicatedWorker() + 20 7 QtWebEngineCore 0x000000012ac9ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff203628fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff2035e443 thread_start + 15 Thread 20:: MemoryInfra 0 ??? 0x00007ffe9431eab8 ??? 1 libsystem_kernel.dylib 0x00007fff2032d2ba mach_msg_trap + 10 2 QtWebEngineCore 0x000000012aca1492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000012aca12cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000012abc91db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x000000012ac3462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x000000012abf87cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x000000012ac53a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x000000012ac9ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff203628fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff2035e443 thread_start + 15 Thread 21:: NetworkConfigWatcher 0 ??? 0x00007ffe9431eab8 ??? 1 libsystem_kernel.dylib 0x00007fff2032d2ba mach_msg_trap + 10 2 QtWebEngineCore 0x000000012aca1492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000012aca12cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000012abc91db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x000000012ac3462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x000000012abf87cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x000000012ac53a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x000000012ac9ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff203628fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff2035e443 thread_start + 15 Thread 22:: com.apple.NSEventThread 0 ??? 0x00007ffe9431eab8 ??? 1 libsystem_kernel.dylib 0x00007fff2032d2ba mach_msg_trap + 10 2 com.apple.CoreFoundation 0x00007fff2045b8c5 __CFRunLoopServiceMachPort + 316 3 com.apple.CoreFoundation 0x00007fff20459f7b __CFRunLoopRun + 1332 4 com.apple.CoreFoundation 0x00007fff20459380 CFRunLoopRunSpecific + 567 5 com.apple.AppKit 0x00007fff22d0a68a _NSEventThread + 124 6 libsystem_pthread.dylib 0x00007fff203628fc _pthread_start + 224 7 libsystem_pthread.dylib 0x00007fff2035e443 thread_start + 15 Thread 23:: ThreadPoolSingleThreadSharedBackgroundBlocking1 0 ??? 0x00007ffe9431eab8 ??? 1 libsystem_kernel.dylib 0x00007fff2032d2ba mach_msg_trap + 10 2 QtWebEngineCore 0x000000012aca1492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000012aca12cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000012ac4976a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42 5 QtWebEngineCore 0x000000012ac49e3d base::internal::WorkerThread::RunWorker() + 237 6 QtWebEngineCore 0x000000012ac49c74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20 7 QtWebEngineCore 0x000000012ac9ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff203628fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff2035e443 thread_start + 15 Thread 24:: ThreadPoolForegroundWorker 0 ??? 0x00007ffe9431eab8 ??? 1 libsystem_kernel.dylib 0x00007fff2032d2ba mach_msg_trap + 10 2 QtWebEngineCore 0x000000012aca1492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000012ac49778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x000000012ac4a150 base::internal::WorkerThread::RunWorker() + 1024 5 QtWebEngineCore 0x000000012ac49cd4 base::internal::WorkerThread::RunPooledWorker() + 20 6 QtWebEngineCore 0x000000012ac9ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff203628fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2035e443 thread_start + 15 Thread 25: 0 runtime 0x00007ffdffee999c 0x7ffdffe8f000 + 371100 Thread 26: 0 runtime 0x00007ffdffee999c 0x7ffdffe8f000 + 371100 Thread 27: 0 runtime 0x00007ffdffee999c 0x7ffdffe8f000 + 371100 Thread 28: 0 runtime 0x00007ffdffee999c 0x7ffdffe8f000 + 371100 Thread 29: 0 runtime 0x00007ffdffee999c 0x7ffdffe8f000 + 371100 Thread 30: 0 runtime 0x00007ffdffee999c 0x7ffdffe8f000 + 371100 Thread 31: 0 runtime 0x00007ffdffee999c 0x7ffdffe8f000 + 371100 Thread 32: 0 runtime 0x00007ffdffee999c 0x7ffdffe8f000 + 371100 Thread 33: 0 runtime 0x00007ffdffee999c 0x7ffdffe8f000 + 371100 Thread 34: 0 runtime 0x00007ffdffee999c 0x7ffdffe8f000 + 371100 Thread 35: 0 runtime 0x00007ffdffee999c 0x7ffdffe8f000 + 371100 Thread 36:: ThreadPoolForegroundWorker 0 ??? 0x00007ffe9431eab8 ??? 1 libsystem_kernel.dylib 0x00007fff2032d2ba mach_msg_trap + 10 2 QtWebEngineCore 0x000000012aca1492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000012ac49778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x000000012ac49e3d base::internal::WorkerThread::RunWorker() + 237 5 QtWebEngineCore 0x000000012ac49cd4 base::internal::WorkerThread::RunPooledWorker() + 20 6 QtWebEngineCore 0x000000012ac9ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff203628fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2035e443 thread_start + 15 Thread 37: 0 ??? 0x00007ffe9431eab8 ??? 1 libsystem_kernel.dylib 0x00007fff2032fcde __psynch_cvwait + 10 2 org.python.python 0x0000000108f0ad6c PyThread_acquire_lock_timed + 700 3 org.python.python 0x0000000108f59a1f acquire_timed + 111 4 org.python.python 0x0000000108f59b30 lock_PyThread_acquire_lock + 48 5 org.python.python 0x0000000108de4e54 method_vectorcall_VARARGS_KEYWORDS + 388 6 org.python.python 0x0000000108eb458c call_function + 732 7 org.python.python 0x0000000108eb1a92 _PyEval_EvalFrameDefault + 25186 8 org.python.python 0x0000000108eb5283 _PyEval_EvalCode + 2611 9 org.python.python 0x0000000108ddc8d1 _PyFunction_Vectorcall + 289 10 org.python.python 0x0000000108eb458c call_function + 732 11 org.python.python 0x0000000108eb1a92 _PyEval_EvalFrameDefault + 25186 12 org.python.python 0x0000000108eb5283 _PyEval_EvalCode + 2611 13 org.python.python 0x0000000108ddc8d1 _PyFunction_Vectorcall + 289 14 org.python.python 0x0000000108eb458c call_function + 732 15 org.python.python 0x0000000108eb1a92 _PyEval_EvalFrameDefault + 25186 16 org.python.python 0x0000000108ddc948 function_code_fastcall + 104 17 org.python.python 0x0000000108eb458c call_function + 732 18 org.python.python 0x0000000108eb1a92 _PyEval_EvalFrameDefault + 25186 19 org.python.python 0x0000000108ddc948 function_code_fastcall + 104 20 org.python.python 0x0000000108eb458c call_function + 732 21 org.python.python 0x0000000108eb1a92 _PyEval_EvalFrameDefault + 25186 22 org.python.python 0x0000000108ddc948 function_code_fastcall + 104 23 org.python.python 0x0000000108dde9d2 method_vectorcall + 274 24 org.python.python 0x0000000108f593c6 t_bootstrap + 70 25 org.python.python 0x0000000108f0a8c9 pythread_wrapper + 25 26 libsystem_pthread.dylib 0x00007fff203628fc _pthread_start + 224 27 libsystem_pthread.dylib 0x00007fff2035e443 thread_start + 15 Thread 38: 0 runtime 0x00007ffdffee999c 0x7ffdffe8f000 + 371100 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x0000000200ca1e00 rcx: 0x0000000000000000 rdx: 0x0000000000000000 rdi: 0xdb57c259e86409d1 rsi: 0x000000014ceab088 rbp: 0xdb57c259e86409d1 rsp: 0x000000014ceab088 r8: 0x000000000000000b r9: 0xdb57c259e86409d1 r10: 0x0000000200ca1e00 r11: 0x00007fff20246bcb r12: 0x0000000000000103 r13: 0x0000000000000000 r14: 0x000000000000000b r15: 0x0000000000000016 rip: rfl: 0x0000000000000283 Binary Images: 0x100ad7000 - 0x100ad7fff 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/usr/lib/libRosetta.dylib Translated Code Information: tmp0: 0xffffffffffffffff tmp1: 0x00007ffe9431ea8c tmp2: 0x00007fff20333924 External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 0 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=1.1G resident=0K(0%) swapped_out_or_unallocated=1.1G(100%) Writable regions: Total=3.8G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=3.8G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 384K 3 Activity Tracing 256K 1 CG backing stores 3840K 6 CG image 620K 24 CG raster data 388K 1 CoreAnimation 1732K 23 CoreGraphics 12K 2 CoreServices 832K 3 CoreUI image data 3592K 29 Foundation 16K 1 Kernel Alloc Once 8K 1 MALLOC 2.5G 196 MALLOC guard page 192K 8 MALLOC_MEDIUM (reserved) 776.0M 8 reserved VM address space (unallocated) Mach message 24K 6 OpenGL GLSL 256K 2 Rosetta Arena 2048K 1 Rosetta Generic 6544K 1633 Rosetta IndirectBranch 2048K 1 Rosetta JIT 128.0M 1 Rosetta Return Stack 760K 76 Rosetta Thread Context 760K 76 STACK GUARD 48K 12 Stack 162.2M 38 Stack Guard 56.1M 26 VM_ALLOCATE 102.5M 233 VM_ALLOCATE (reserved) 160.1M 16 reserved VM address space (unallocated) __DATA 31.1M 596 __DATA_CONST 21.8M 264 __DATA_DIRTY 1262K 170 __FONT_DATA 4K 1 __GLSLBUILTINS 5176K 1 __LINKEDIT 600.1M 162 __OBJC_RO 70.2M 1 __OBJC_RW 2480K 2 __TEXT 576.7M 573 __UNICODE 588K 1 mapped file 4.6G 1020 shared memory 3016K 28 unshared pmap 10.5M 6 =========== ======= ======= TOTAL 9.8G 5252 TOTAL, minus reserved VM space 8.9G 5252 System Profile: Network Service: Wi-Fi, AirPort, en0 Boot Volume File System Type: apfs Memory Module: LPDDR4 USB Device: USB 3.1 Bus USB Device: USB 3.1 Bus Thunderbolt Bus: MacBook Pro, Apple Inc. Thunderbolt Bus: MacBook Pro, Apple Inc. Model: MacBookPro17,1, BootROM 6723.120.36, proc 8:4:4 processors, 16 GB, SMC Graphics: kHW_AppleM1Item, Apple M1, spdisplays_builtin AirPort: spairport_wireless_card_type_airport_extreme, wl0: Apr 28 2021 19:53:33 version 18.50.40.7.7.8.119 FWID 01-e6894c69 Bluetooth: Version 8.0.5d7, 3 services, 25 devices, 1 incoming serial ports Log: UCSF ChimeraX version: 1.3.dev202109212024 (2021-09-21) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 71.6.4 OpenGL renderer: Apple M1 OpenGL vendor: AppleHardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro17,1 Processor Name: Unknown Processor Speed: 2.4 GHz Number of Processors: 1 Total Number of Cores: 8 L2 Cache (per Core): 4 MB Memory: 16 GB Software: System Software Overview: System Version: macOS 11.4 (20F71) Kernel Version: Darwin 20.5.0 Time since boot: 31 days 23:02 Graphics/Displays: Apple M1: Chipset Model: Apple M1 Type: GPU Bus: Built-In Total Number of Cores: 8 Vendor: Apple (0x106b) Metal Family: Supported, Metal GPUFamily Apple 7 Displays: Color LCD: Resolution: 3360 x 2100 UI Looks like: 1680 x 1050 @ 60.00Hz Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal Locale: (None, 'UTF-8') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.2 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2021.5.30 cftime: 1.5.0 charset-normalizer: 2.0.6 ChimeraX-AddCharge: 1.1.4 ChimeraX-AddH: 2.1.10 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.2.2 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.29.1 ChimeraX-AtomicLibrary: 4.1.4 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.0 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.6 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.1 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5 ChimeraX-CommandLine: 1.1.5 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.3.dev202109212024 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.1 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.1 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.5 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.1 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.4 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.1 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.4 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.2 ChimeraX-ModelPanel: 1.2 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.7 ChimeraX-PDB: 2.6.2 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.1 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.4.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.6 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.13 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 cxservices: 1.1 cycler: 0.10.0 Cython: 0.29.24 decorator: 5.1.0 distlib: 0.3.2 docutils: 0.17.1 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 3.4.0 html2text: 2020.1.16 idna: 3.2 ihm: 0.20 imagecodecs: 2021.4.28 imagesize: 1.2.0 ipykernel: 5.5.5 ipython: 7.23.1 ipython-genutils: 0.2.0 jedi: 0.18.0 Jinja2: 3.0.1 jupyter-client: 6.1.12 jupyter-core: 4.8.1 kiwisolver: 1.3.2 lxml: 4.6.3 lz4: 3.1.3 MarkupSafe: 2.0.1 matplotlib: 3.4.3 matplotlib-inline: 0.1.3 msgpack: 1.0.2 netCDF4: 1.5.7 networkx: 2.6.3 numexpr: 2.7.3 numpy: 1.21.2 openvr: 1.16.801 packaging: 21.0 ParmEd: 3.2.0 parso: 0.8.2 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 8.3.2 pip: 21.2.4 pkginfo: 1.7.1 prompt-toolkit: 3.0.20 psutil: 5.8.0 ptyprocess: 0.7.0 pycollada: 0.7.1 pydicom: 2.1.2 Pygments: 2.10.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.2 pytz: 2021.1 pyzmq: 22.3.0 qtconsole: 5.1.1 QtPy: 1.11.1 RandomWords: 0.3.0 requests: 2.26.0 scipy: 1.7.1 setuptools: 57.5.0 sfftk-rw: 0.7.1 six: 1.16.0 snowballstemmer: 2.1.0 sortedcontainers: 2.4.0 Sphinx: 4.2.0 sphinx-autodoc-typehints: 1.12.0 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tifffile: 2021.4.8 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.1.0 urllib3: 1.26.6 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.0 wheel-filename: 1.3.0 }}} " defect closed normal Volume Data can't reproduce Tom Goddard all ChimeraX