id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
5259	no 'clip model'	lorena.zuzic@…	Eric Pettersen	"{{{
The following bug report has been submitted:
Platform:        Linux-5.3.0-050300-generic-x86_64-with-debian-buster-sid
ChimeraX Version: 1.0rc202005130635 (2020-05-13 06:35:59 UTC)
Description
Hi, It seems that the clip model command is not working (if using ""clip model #!1 false"", everything after clip is marked in red and the error message appears (""Expected a keyword""). Clip command seems to be working fine, though.

Log:
UCSF ChimeraX version: 1.0rc202005130635 (2020-05-13)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open DENV2_frame29_alphapocket.pdb

Chain information for DENV2_frame29_alphapocket.pdb #1  
---  
Chain | Description  
A G | No description available  
B H | No description available  
  

> preset ""overall look"" publication

Preset expands to these ChimeraX commands:

    
    
    set bg white
    graphics silhouettes t

  

> hide ribbons

> hide atoms

> show /a,b,g,h surfaces

> color cornflowerblue target s

> transparency 95 target s

> select :BNZV

65 atoms, 62 bonds, 30 pseudobonds, 2 models selected  

> color sel yellow

> show sel atoms

> hide H

> hide @VS

> clip front -1 position :BNZV

> clip front -2 position :BNZV

> clip front 1 position :BNZV

> clip front 0 position :BNZV

> select clear

> clip model #!1 false

Expected a keyword  




OpenGL version: 4.6 (Core Profile) Mesa 20.0.8
OpenGL renderer: Mesa DRI Intel(R) HD Graphics 520 (SKL GT2)
OpenGL vendor: Intel Open Source Technology Center
Manufacturer: LENOVO
Model: 20FJS1AP00
OS: Ubuntu 18.04 bionic
Architecture: 64bit ELF
CPU: 4 Intel(R) Core(TM) i5-6200U CPU @ 2.30GHz
Cache Size: 3072 KB
Memory:
	              total        used        free      shared  buff/cache   available
	Mem:           7.2G        5.0G        171M        430M        2.0G        1.6G
	Swap:          7.4G        1.6G        5.8G

Graphics:
	00:02.0 VGA compatible controller [0300]: Intel Corporation Skylake GT2 [HD Graphics 520] [8086:1916] (rev 07)	
	Subsystem: Lenovo Skylake GT2 [HD Graphics 520] [17aa:2231]	
	Kernel driver in use: i915
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.8

}}}
"	defect	closed	normal		Depiction		not a bug						all	ChimeraX