id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 5203 bigalpha.py: can't set residues.numbers shujun.cai@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 1.2.5 (2021-05-24) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/nus/Desktop/Alphafold2/bigalpha.py executed bigalpha.py > bigalpha Q8WZ42 directory > /Users/nus/Desktop/Alphafold2/UP000005640_9606_HUMAN/ AlphaFold Q8WZ42 is split into 166 mmCIF files > open AF-Q8WZ42-F1-model_v1.pdb.gz No such file/path: AF-Q8WZ42-F1-model_v1.pdb.gz > open /Users/nus/Desktop/Alphafold2/bigalpha.py format python FYI: command is replacing existing command: ""bigalpha"" executed bigalpha.py > open > /Users/nus/Desktop/Alphafold2/UP000005640_9606_HUMAN/AF-Q8WZ42-F94-model_v1.pdb.gz > format pdb AF-Q8WZ42-F94-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F94-model_v1.pdb.gz #1 --- Chain | Description A | TITIN > close > open > /Users/nus/Desktop/Alphafold2/UP000005640_9606_HUMAN/AF-Q8WZ42-F1-model_v1.pdb.gz AF-Q8WZ42-F1-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F1-model_v1.pdb.gz #1 --- Chain | Description A | TITIN > open /Users/nus/Desktop/Alphafold2/UP000005640_9606_HUMAN/bigalpha.py No such file/path: /Users/nus/Desktop/Alphafold2/UP000005640_9606_HUMAN/bigalpha.py > open /Users/nus/Desktop/Alphafold2/bigalpha.py FYI: command is replacing existing command: ""bigalpha"" executed bigalpha.py > cd /Users/nus/Desktop/Alphafold2/UP000005640_9606_HUMAN/ Current working directory is: /Users/nus/Desktop/Alphafold2/UP000005640_9606_HUMAN > bigalpha Q8WZ42 AlphaFold Q8WZ42 is split into 166 mmCIF files > open AF-Q8WZ42-F1-model_v1.pdb.gz AF-Q8WZ42-F1-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F1-model_v1.pdb.gz #2 --- Chain | Description A | TITIN > color bfactor #2 palette alphafold Fetching compressed palette alphafold from http://www.colourlovers.com/api/palettes?keywords=alphafold&format=json&numResults=100 Could not find palette alphafold at COLOURlovers.com using keyword search > close > bigalpha Q8WZ42 AlphaFold Q8WZ42 is split into 166 mmCIF files > open AF-Q8WZ42-F1-model_v1.pdb.gz AF-Q8WZ42-F1-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F1-model_v1.pdb.gz #1 --- Chain | Description A | TITIN > color bfactor #1 palette alphafold Could not find palette alphafold at COLOURlovers.com using keyword search > bigalpha Q8WZ42 directory > /Users/nus/Desktop/Alphafold2/UP000005640_9606_HUMAN AlphaFold Q8WZ42 is split into 166 mmCIF files > open AF-Q8WZ42-F1-model_v1.pdb.gz AF-Q8WZ42-F1-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F1-model_v1.pdb.gz #2 --- Chain | Description A | TITIN > color bfactor #2 palette alphafold Could not find palette alphafold at COLOURlovers.com using keyword search > bigalpha Q8WZ42 AlphaFold Q8WZ42 is split into 166 mmCIF files > open AF-Q8WZ42-F1-model_v1.pdb.gz AF-Q8WZ42-F1-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F1-model_v1.pdb.gz #3 --- Chain | Description A | TITIN > color bfactor #3 palette alphafold Could not find palette alphafold at COLOURlovers.com using keyword search > close > bigalpha Q8WZ42 AlphaFold Q8WZ42 is split into 166 mmCIF files > open AF-Q8WZ42-F1-model_v1.pdb.gz AF-Q8WZ42-F1-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F1-model_v1.pdb.gz #1 --- Chain | Description A | TITIN > color bfactor #1 palette alphafold Could not find palette alphafold at COLOURlovers.com using keyword search > bigalpha Q8WZ42 AlphaFold Q8WZ42 is split into 166 mmCIF files > open AF-Q8WZ42-F1-model_v1.pdb.gz AF-Q8WZ42-F1-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F1-model_v1.pdb.gz #2 --- Chain | Description A | TITIN > color bfactor #2 palette alphafold Could not find palette alphafold at COLOURlovers.com using keyword search > open bigalpha.py No such file/path: bigalpha.py > cd /Users/nus/Desktop/Alphafold2 Current working directory is: /Users/nus/Desktop/Alphafold2 > open bigalpha.py FYI: command is replacing existing command: ""bigalpha"" executed bigalpha.py > close > bigalpha Q8WZ42 AlphaFold Q8WZ42 is split into 0 mmCIF files > open AF-Q8WZ42-F0-model_v1.pdb.gz No such file/path: AF-Q8WZ42-F0-model_v1.pdb.gz > cd /Users/nus/Desktop/Alphafold2/UP000005640_9606_HUMAN Current working directory is: /Users/nus/Desktop/Alphafold2/UP000005640_9606_HUMAN > cd /Users/nus/Desktop/Alphafold2/UP000005640_9606_HUMAN Current working directory is: /Users/nus/Desktop/Alphafold2/UP000005640_9606_HUMAN > bigalpha Q8WZ42 AlphaFold Q8WZ42 is split into 166 mmCIF files > open AF-Q8WZ42-F1-model_v1.pdb.gz AF-Q8WZ42-F1-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F1-model_v1.pdb.gz #1 --- Chain | Description A | TITIN > color bfactor #1 palette rainbow 10797 atoms, 1400 residues, atom bfactor range 24.8 to 96.7 > hide #1 cartoons > show #1 atoms > style #1 sphere Changed 10797 atom styles > open AF-Q8WZ42-F7-model_v1.pdb.gz AF-Q8WZ42-F7-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F7-model_v1.pdb.gz #2 --- Chain | Description A | TITIN > color bfactor #2 palette rainbow 11244 atoms, 1400 residues, atom bfactor range 26.2 to 97 > hide #2 cartoons > show #2 atoms > style #2 sphere Changed 11244 atom styles > align #2:196-200@CA toAtoms #1:1395-1399@CA RMSD between 5 atom pairs is 1.585 angstroms > delete #2:1-200 > open AF-Q8WZ42-F13-model_v1.pdb.gz AF-Q8WZ42-F13-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F13-model_v1.pdb.gz #3 --- Chain | Description A | TITIN > color bfactor #3 palette rainbow 11015 atoms, 1400 residues, atom bfactor range 24.5 to 96.6 > hide #3 cartoons > show #3 atoms > style #3 sphere Changed 11015 atom styles > align #3:196-200@CA toAtoms #2:1395-1399@CA RMSD between 5 atom pairs is 1.103 angstroms > delete #3:1-200 > open AF-Q8WZ42-F19-model_v1.pdb.gz AF-Q8WZ42-F19-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F19-model_v1.pdb.gz #4 --- Chain | Description A | TITIN > color bfactor #4 palette rainbow 10832 atoms, 1400 residues, atom bfactor range 22.8 to 96.8 > hide #4 cartoons > show #4 atoms > style #4 sphere Changed 10832 atom styles > align #4:196-200@CA toAtoms #3:1395-1399@CA RMSD between 5 atom pairs is 0.465 angstroms > delete #4:1-200 > open AF-Q8WZ42-F25-model_v1.pdb.gz AF-Q8WZ42-F25-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F25-model_v1.pdb.gz #5 --- Chain | Description A | TITIN > color bfactor #5 palette rainbow 10810 atoms, 1400 residues, atom bfactor range 56.9 to 95.8 > hide #5 cartoons > show #5 atoms > style #5 sphere Changed 10810 atom styles > align #5:196-200@CA toAtoms #4:1395-1399@CA RMSD between 5 atom pairs is 2.331 angstroms > delete #5:1-200 > open AF-Q8WZ42-F31-model_v1.pdb.gz AF-Q8WZ42-F31-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F31-model_v1.pdb.gz #6 --- Chain | Description A | TITIN > color bfactor #6 palette rainbow 10775 atoms, 1400 residues, atom bfactor range 32.6 to 96.2 > hide #6 cartoons > show #6 atoms > style #6 sphere Changed 10775 atom styles > align #6:196-200@CA toAtoms #5:1395-1399@CA RMSD between 5 atom pairs is 0.738 angstroms > delete #6:1-200 > open AF-Q8WZ42-F37-model_v1.pdb.gz AF-Q8WZ42-F37-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F37-model_v1.pdb.gz #7 --- Chain | Description A | TITIN > color bfactor #7 palette rainbow 10739 atoms, 1400 residues, atom bfactor range 27.3 to 94.7 > hide #7 cartoons > show #7 atoms > style #7 sphere Changed 10739 atom styles > align #7:196-200@CA toAtoms #6:1395-1399@CA RMSD between 5 atom pairs is 2.736 angstroms > delete #7:1-200 > open AF-Q8WZ42-F43-model_v1.pdb.gz AF-Q8WZ42-F43-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F43-model_v1.pdb.gz #8 --- Chain | Description A | TITIN > color bfactor #8 palette rainbow 10878 atoms, 1400 residues, atom bfactor range 4.74 to 96 > hide #8 cartoons > show #8 atoms > style #8 sphere Changed 10878 atom styles > align #8:196-200@CA toAtoms #7:1395-1399@CA RMSD between 5 atom pairs is 0.761 angstroms > delete #8:1-200 > open AF-Q8WZ42-F49-model_v1.pdb.gz AF-Q8WZ42-F49-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F49-model_v1.pdb.gz #9 --- Chain | Description A | TITIN > color bfactor #9 palette rainbow 11339 atoms, 1400 residues, atom bfactor range 22.2 to 98.3 > hide #9 cartoons > show #9 atoms > style #9 sphere Changed 11339 atom styles > align #9:196-200@CA toAtoms #8:1395-1399@CA RMSD between 5 atom pairs is 2.022 angstroms > delete #9:1-200 > open AF-Q8WZ42-F55-model_v1.pdb.gz AF-Q8WZ42-F55-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F55-model_v1.pdb.gz #10 --- Chain | Description A | TITIN > color bfactor #10 palette rainbow 10995 atoms, 1400 residues, atom bfactor range 24.9 to 98 > hide #10 cartoons > show #10 atoms > style #10 sphere Changed 10995 atom styles > align #10:196-200@CA toAtoms #9:1395-1399@CA RMSD between 5 atom pairs is 0.848 angstroms > delete #10:1-200 > open AF-Q8WZ42-F61-model_v1.pdb.gz AF-Q8WZ42-F61-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F61-model_v1.pdb.gz #11 --- Chain | Description A | TITIN > color bfactor #11 palette rainbow 11076 atoms, 1400 residues, atom bfactor range 28.9 to 96.7 > hide #11 cartoons > show #11 atoms > style #11 sphere Changed 11076 atom styles > align #11:196-200@CA toAtoms #10:1395-1399@CA RMSD between 5 atom pairs is 0.281 angstroms > delete #11:1-200 > open AF-Q8WZ42-F67-model_v1.pdb.gz AF-Q8WZ42-F67-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F67-model_v1.pdb.gz #12 --- Chain | Description A | TITIN > color bfactor #12 palette rainbow 11108 atoms, 1400 residues, atom bfactor range 17.2 to 96.2 > hide #12 cartoons > show #12 atoms > style #12 sphere Changed 11108 atom styles > align #12:196-200@CA toAtoms #11:1395-1399@CA RMSD between 5 atom pairs is 1.087 angstroms > delete #12:1-200 > open AF-Q8WZ42-F73-model_v1.pdb.gz AF-Q8WZ42-F73-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F73-model_v1.pdb.gz #13 --- Chain | Description A | TITIN > color bfactor #13 palette rainbow 10961 atoms, 1400 residues, atom bfactor range 32.8 to 96.4 > hide #13 cartoons > show #13 atoms > style #13 sphere Changed 10961 atom styles > align #13:196-200@CA toAtoms #12:1395-1399@CA RMSD between 5 atom pairs is 0.928 angstroms > delete #13:1-200 > open AF-Q8WZ42-F79-model_v1.pdb.gz AF-Q8WZ42-F79-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F79-model_v1.pdb.gz #14 --- Chain | Description A | TITIN > color bfactor #14 palette rainbow 10939 atoms, 1400 residues, atom bfactor range 31.6 to 96.9 > hide #14 cartoons > show #14 atoms > style #14 sphere Changed 10939 atom styles > align #14:196-200@CA toAtoms #13:1395-1399@CA RMSD between 5 atom pairs is 1.711 angstroms > delete #14:1-200 > open AF-Q8WZ42-F85-model_v1.pdb.gz AF-Q8WZ42-F85-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F85-model_v1.pdb.gz #15 --- Chain | Description A | TITIN > color bfactor #15 palette rainbow 10952 atoms, 1400 residues, atom bfactor range 33.1 to 97.6 > hide #15 cartoons > show #15 atoms > style #15 sphere Changed 10952 atom styles > align #15:196-200@CA toAtoms #14:1395-1399@CA RMSD between 5 atom pairs is 0.641 angstroms > delete #15:1-200 > open AF-Q8WZ42-F91-model_v1.pdb.gz AF-Q8WZ42-F91-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F91-model_v1.pdb.gz #16 --- Chain | Description A | TITIN > color bfactor #16 palette rainbow 10966 atoms, 1400 residues, atom bfactor range 50.4 to 96 > hide #16 cartoons > show #16 atoms > style #16 sphere Changed 10966 atom styles > align #16:196-200@CA toAtoms #15:1395-1399@CA RMSD between 5 atom pairs is 1.802 angstroms > delete #16:1-200 > open AF-Q8WZ42-F97-model_v1.pdb.gz AF-Q8WZ42-F97-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F97-model_v1.pdb.gz #17 --- Chain | Description A | TITIN > color bfactor #17 palette rainbow 10886 atoms, 1400 residues, atom bfactor range 54 to 97 > hide #17 cartoons > show #17 atoms > style #17 sphere Changed 10886 atom styles > align #17:196-200@CA toAtoms #16:1395-1399@CA RMSD between 5 atom pairs is 0.542 angstroms > delete #17:1-200 > open AF-Q8WZ42-F103-model_v1.pdb.gz AF-Q8WZ42-F103-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F103-model_v1.pdb.gz #18 --- Chain | Description A | TITIN > color bfactor #18 palette rainbow 10883 atoms, 1400 residues, atom bfactor range 36.8 to 96.9 > hide #18 cartoons > show #18 atoms > style #18 sphere Changed 10883 atom styles > align #18:196-200@CA toAtoms #17:1395-1399@CA RMSD between 5 atom pairs is 2.342 angstroms > delete #18:1-200 > open AF-Q8WZ42-F109-model_v1.pdb.gz AF-Q8WZ42-F109-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F109-model_v1.pdb.gz #19 --- Chain | Description A | TITIN > color bfactor #19 palette rainbow 10863 atoms, 1400 residues, atom bfactor range 15.6 to 96.8 > hide #19 cartoons > show #19 atoms > style #19 sphere Changed 10863 atom styles > align #19:196-200@CA toAtoms #18:1395-1399@CA RMSD between 5 atom pairs is 0.968 angstroms > delete #19:1-200 > open AF-Q8WZ42-F115-model_v1.pdb.gz AF-Q8WZ42-F115-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F115-model_v1.pdb.gz #20 --- Chain | Description A | TITIN > color bfactor #20 palette rainbow 10882 atoms, 1400 residues, atom bfactor range 44.7 to 96.8 > hide #20 cartoons > show #20 atoms > style #20 sphere Changed 10882 atom styles > align #20:196-200@CA toAtoms #19:1395-1399@CA RMSD between 5 atom pairs is 1.242 angstroms > delete #20:1-200 > open AF-Q8WZ42-F121-model_v1.pdb.gz AF-Q8WZ42-F121-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F121-model_v1.pdb.gz #21 --- Chain | Description A | TITIN > color bfactor #21 palette rainbow 10876 atoms, 1400 residues, atom bfactor range 37.7 to 97.7 > hide #21 cartoons > show #21 atoms > style #21 sphere Changed 10876 atom styles > align #21:196-200@CA toAtoms #20:1395-1399@CA RMSD between 5 atom pairs is 0.480 angstroms > delete #21:1-200 > open AF-Q8WZ42-F127-model_v1.pdb.gz AF-Q8WZ42-F127-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F127-model_v1.pdb.gz #22 --- Chain | Description A | TITIN > color bfactor #22 palette rainbow 10848 atoms, 1400 residues, atom bfactor range 32.1 to 97.4 > hide #22 cartoons > show #22 atoms > style #22 sphere Changed 10848 atom styles > align #22:196-200@CA toAtoms #21:1395-1399@CA RMSD between 5 atom pairs is 2.398 angstroms > delete #22:1-200 > open AF-Q8WZ42-F133-model_v1.pdb.gz AF-Q8WZ42-F133-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F133-model_v1.pdb.gz #23 --- Chain | Description A | TITIN > color bfactor #23 palette rainbow 10875 atoms, 1400 residues, atom bfactor range 33.1 to 96.7 > hide #23 cartoons > show #23 atoms > style #23 sphere Changed 10875 atom styles > align #23:196-200@CA toAtoms #22:1395-1399@CA RMSD between 5 atom pairs is 1.181 angstroms > delete #23:1-200 > open AF-Q8WZ42-F139-model_v1.pdb.gz AF-Q8WZ42-F139-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F139-model_v1.pdb.gz #24 --- Chain | Description A | TITIN > color bfactor #24 palette rainbow 10875 atoms, 1400 residues, atom bfactor range 44.4 to 96.7 > hide #24 cartoons > show #24 atoms > style #24 sphere Changed 10875 atom styles > align #24:196-200@CA toAtoms #23:1395-1399@CA RMSD between 5 atom pairs is 0.895 angstroms > delete #24:1-200 > open AF-Q8WZ42-F145-model_v1.pdb.gz AF-Q8WZ42-F145-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F145-model_v1.pdb.gz #25 --- Chain | Description A | TITIN > color bfactor #25 palette rainbow 10871 atoms, 1400 residues, atom bfactor range 41.8 to 96.4 > hide #25 cartoons > show #25 atoms > style #25 sphere Changed 10871 atom styles > align #25:196-200@CA toAtoms #24:1395-1399@CA RMSD between 5 atom pairs is 0.459 angstroms > delete #25:1-200 > open AF-Q8WZ42-F151-model_v1.pdb.gz AF-Q8WZ42-F151-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F151-model_v1.pdb.gz #26 --- Chain | Description A | TITIN > color bfactor #26 palette rainbow 10955 atoms, 1400 residues, atom bfactor range 55 to 96.3 > hide #26 cartoons > show #26 atoms > style #26 sphere Changed 10955 atom styles > align #26:196-200@CA toAtoms #25:1395-1399@CA RMSD between 5 atom pairs is 1.067 angstroms > delete #26:1-200 > open AF-Q8WZ42-F157-model_v1.pdb.gz AF-Q8WZ42-F157-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F157-model_v1.pdb.gz #27 --- Chain | Description A | TITIN > color bfactor #27 palette rainbow 11139 atoms, 1400 residues, atom bfactor range 28 to 98 > hide #27 cartoons > show #27 atoms > style #27 sphere Changed 11139 atom styles > align #27:196-200@CA toAtoms #26:1395-1399@CA RMSD between 5 atom pairs is 1.180 angstroms > delete #27:1-200 > open AF-Q8WZ42-F163-model_v1.pdb.gz AF-Q8WZ42-F163-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F163-model_v1.pdb.gz #28 --- Chain | Description A | TITIN > color bfactor #28 palette rainbow 11317 atoms, 1400 residues, atom bfactor range 25.2 to 94.8 > hide #28 cartoons > show #28 atoms > style #28 sphere Changed 11317 atom styles > align #28:196-200@CA toAtoms #27:1395-1399@CA RMSD between 5 atom pairs is 1.715 angstroms > delete #28:1-200 > open AF-Q8WZ42-F166-model_v1.pdb.gz AF-Q8WZ42-F166-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F166-model_v1.pdb.gz #29 --- Chain | Description A | TITIN > color bfactor #29 palette rainbow 10581 atoms, 1350 residues, atom bfactor range 25.4 to 96.8 > hide #29 cartoons > show #29 atoms > style #29 sphere Changed 10581 atom styles > align #29:796-800@CA toAtoms #28:1395-1399@CA RMSD between 5 atom pairs is 0.716 angstroms > delete #29:1-800 Traceback (most recent call last): File ""/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/cmd_line/tool.py"", line 280, in execute cmd.run(cmd_text) File ""/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/core/commands/cli.py"", line 2852, in run result = ci.function(session, **kw_args) File ""bigalpha.py"", line 64, in open_multifile_alphafold_model File ""bigalpha.py"", line 102, in shift_residue_numbers AttributeError: can't set attribute AttributeError: can't set attribute File ""bigalpha.py"", line 102, in shift_residue_numbers See log for complete Python traceback. > bigalpha Q709C8 AlphaFold Q709C8 is split into 13 mmCIF files > open AF-Q709C8-F1-model_v1.pdb.gz AF-Q709C8-F1-model_v1.pdb.gz title: Alphafold V2.0 prediction for vacuolar protein sorting-associated protein 13C (Q709C8) [more info...] Chain information for AF-Q709C8-F1-model_v1.pdb.gz #30 --- Chain | Description A | vacuolar protein sorting-associated protein 13C > color bfactor #30 palette rainbow 11171 atoms, 1400 residues, atom bfactor range 19.1 to 97.2 > hide #30 cartoons > show #30 atoms > style #30 sphere Changed 11171 atom styles > open AF-Q709C8-F7-model_v1.pdb.gz AF-Q709C8-F7-model_v1.pdb.gz title: Alphafold V2.0 prediction for vacuolar protein sorting-associated protein 13C (Q709C8) [more info...] Chain information for AF-Q709C8-F7-model_v1.pdb.gz #31 --- Chain | Description A | vacuolar protein sorting-associated protein 13C > color bfactor #31 palette rainbow 10972 atoms, 1400 residues, atom bfactor range 21.8 to 96.6 > hide #31 cartoons > show #31 atoms > style #31 sphere Changed 10972 atom styles > align #31:196-200@CA toAtoms #30:1395-1399@CA RMSD between 5 atom pairs is 0.738 angstroms > delete #31:1-200 > open AF-Q709C8-F13-model_v1.pdb.gz AF-Q709C8-F13-model_v1.pdb.gz title: Alphafold V2.0 prediction for vacuolar protein sorting-associated protein 13C (Q709C8) [more info...] Chain information for AF-Q709C8-F13-model_v1.pdb.gz #32 --- Chain | Description A | vacuolar protein sorting-associated protein 13C > color bfactor #32 palette rainbow 10721 atoms, 1353 residues, atom bfactor range 28.1 to 94.7 > hide #32 cartoons > show #32 atoms > style #32 sphere Changed 10721 atom styles > align #32:196-200@CA toAtoms #31:1395-1399@CA RMSD between 5 atom pairs is 1.442 angstroms > delete #32:1-200 Traceback (most recent call last): File ""/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/cmd_line/tool.py"", line 280, in execute cmd.run(cmd_text) File ""/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/core/commands/cli.py"", line 2852, in run result = ci.function(session, **kw_args) File ""bigalpha.py"", line 64, in open_multifile_alphafold_model File ""bigalpha.py"", line 102, in shift_residue_numbers AttributeError: can't set attribute AttributeError: can't set attribute File ""bigalpha.py"", line 102, in shift_residue_numbers See log for complete Python traceback. > close > bigalpha Q709C8 AlphaFold Q709C8 is split into 13 mmCIF files > open AF-Q709C8-F1-model_v1.pdb.gz AF-Q709C8-F1-model_v1.pdb.gz title: Alphafold V2.0 prediction for vacuolar protein sorting-associated protein 13C (Q709C8) [more info...] Chain information for AF-Q709C8-F1-model_v1.pdb.gz #1 --- Chain | Description A | vacuolar protein sorting-associated protein 13C > color bfactor #1 palette rainbow 11171 atoms, 1400 residues, atom bfactor range 19.1 to 97.2 > hide #1 cartoons > show #1 atoms > style #1 sphere Changed 11171 atom styles > open AF-Q709C8-F7-model_v1.pdb.gz AF-Q709C8-F7-model_v1.pdb.gz title: Alphafold V2.0 prediction for vacuolar protein sorting-associated protein 13C (Q709C8) [more info...] Chain information for AF-Q709C8-F7-model_v1.pdb.gz #2 --- Chain | Description A | vacuolar protein sorting-associated protein 13C > color bfactor #2 palette rainbow 10972 atoms, 1400 residues, atom bfactor range 21.8 to 96.6 > hide #2 cartoons > show #2 atoms > style #2 sphere Changed 10972 atom styles > align #2:196-200@CA toAtoms #1:1395-1399@CA RMSD between 5 atom pairs is 0.738 angstroms > delete #2:1-200 > open AF-Q709C8-F13-model_v1.pdb.gz AF-Q709C8-F13-model_v1.pdb.gz title: Alphafold V2.0 prediction for vacuolar protein sorting-associated protein 13C (Q709C8) [more info...] Chain information for AF-Q709C8-F13-model_v1.pdb.gz #3 --- Chain | Description A | vacuolar protein sorting-associated protein 13C > color bfactor #3 palette rainbow 10721 atoms, 1353 residues, atom bfactor range 28.1 to 94.7 > hide #3 cartoons > show #3 atoms > style #3 sphere Changed 10721 atom styles > align #3:196-200@CA toAtoms #2:1395-1399@CA RMSD between 5 atom pairs is 1.442 angstroms > delete #3:1-200 Traceback (most recent call last): File ""/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/cmd_line/tool.py"", line 280, in execute cmd.run(cmd_text) File ""/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/core/commands/cli.py"", line 2852, in run result = ci.function(session, **kw_args) File ""bigalpha.py"", line 64, in open_multifile_alphafold_model File ""bigalpha.py"", line 102, in shift_residue_numbers AttributeError: can't set attribute AttributeError: can't set attribute File ""bigalpha.py"", line 102, in shift_residue_numbers See log for complete Python traceback. > show atoms > hide atoms > hide atoms > show atoms > show cartoons > hide atoms > hide #2 models > hide #3 models > show #2 models > hide #2 models > show #2 models > hide #2 models > show #2 models > show #3 models > hide #2 models > show #2 models > hide #2 models > close > bigalpha Q709C8 directory > /Users/nus/Desktop/Alphafold2/UP000005640_9606_HUMAN AlphaFold Q709C8 is split into 13 mmCIF files > open AF-Q709C8-F1-model_v1.pdb.gz AF-Q709C8-F1-model_v1.pdb.gz title: Alphafold V2.0 prediction for vacuolar protein sorting-associated protein 13C (Q709C8) [more info...] Chain information for AF-Q709C8-F1-model_v1.pdb.gz #1 --- Chain | Description A | vacuolar protein sorting-associated protein 13C > color bfactor #1 palette rainbow 11171 atoms, 1400 residues, atom bfactor range 19.1 to 97.2 > hide #1 cartoons > show #1 atoms > style #1 sphere Changed 11171 atom styles > open AF-Q709C8-F7-model_v1.pdb.gz AF-Q709C8-F7-model_v1.pdb.gz title: Alphafold V2.0 prediction for vacuolar protein sorting-associated protein 13C (Q709C8) [more info...] Chain information for AF-Q709C8-F7-model_v1.pdb.gz #2 --- Chain | Description A | vacuolar protein sorting-associated protein 13C > color bfactor #2 palette rainbow 10972 atoms, 1400 residues, atom bfactor range 21.8 to 96.6 > hide #2 cartoons > show #2 atoms > style #2 sphere Changed 10972 atom styles > align #2:196-200@CA toAtoms #1:1395-1399@CA RMSD between 5 atom pairs is 0.738 angstroms > delete #2:1-200 > open AF-Q709C8-F13-model_v1.pdb.gz AF-Q709C8-F13-model_v1.pdb.gz title: Alphafold V2.0 prediction for vacuolar protein sorting-associated protein 13C (Q709C8) [more info...] Chain information for AF-Q709C8-F13-model_v1.pdb.gz #3 --- Chain | Description A | vacuolar protein sorting-associated protein 13C > color bfactor #3 palette rainbow 10721 atoms, 1353 residues, atom bfactor range 28.1 to 94.7 > hide #3 cartoons > show #3 atoms > style #3 sphere Changed 10721 atom styles > align #3:196-200@CA toAtoms #2:1395-1399@CA RMSD between 5 atom pairs is 1.442 angstroms > delete #3:1-200 Traceback (most recent call last): File ""/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/cmd_line/tool.py"", line 280, in execute cmd.run(cmd_text) File ""/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/core/commands/cli.py"", line 2852, in run result = ci.function(session, **kw_args) File ""bigalpha.py"", line 64, in open_multifile_alphafold_model File ""bigalpha.py"", line 102, in shift_residue_numbers AttributeError: can't set attribute AttributeError: can't set attribute File ""bigalpha.py"", line 102, in shift_residue_numbers See log for complete Python traceback. > bigalpha Q8WZ42 AlphaFold Q8WZ42 is split into 166 mmCIF files > open AF-Q8WZ42-F1-model_v1.pdb.gz AF-Q8WZ42-F1-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F1-model_v1.pdb.gz #4 --- Chain | Description A | TITIN > color bfactor #4 palette rainbow 10797 atoms, 1400 residues, atom bfactor range 24.8 to 96.7 > hide #4 cartoons > show #4 atoms > style #4 sphere Changed 10797 atom styles > open AF-Q8WZ42-F7-model_v1.pdb.gz AF-Q8WZ42-F7-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F7-model_v1.pdb.gz #5 --- Chain | Description A | TITIN > color bfactor #5 palette rainbow 11244 atoms, 1400 residues, atom bfactor range 26.2 to 97 > hide #5 cartoons > show #5 atoms > style #5 sphere Changed 11244 atom styles > align #5:196-200@CA toAtoms #4:1395-1399@CA RMSD between 5 atom pairs is 1.585 angstroms > delete #5:1-200 > open AF-Q8WZ42-F13-model_v1.pdb.gz AF-Q8WZ42-F13-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F13-model_v1.pdb.gz #6 --- Chain | Description A | TITIN > color bfactor #6 palette rainbow 11015 atoms, 1400 residues, atom bfactor range 24.5 to 96.6 > hide #6 cartoons > show #6 atoms > style #6 sphere Changed 11015 atom styles > align #6:196-200@CA toAtoms #5:1395-1399@CA RMSD between 5 atom pairs is 1.103 angstroms > delete #6:1-200 > open AF-Q8WZ42-F19-model_v1.pdb.gz AF-Q8WZ42-F19-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F19-model_v1.pdb.gz #7 --- Chain | Description A | TITIN > color bfactor #7 palette rainbow 10832 atoms, 1400 residues, atom bfactor range 22.8 to 96.8 > hide #7 cartoons > show #7 atoms > style #7 sphere Changed 10832 atom styles > align #7:196-200@CA toAtoms #6:1395-1399@CA RMSD between 5 atom pairs is 0.465 angstroms > delete #7:1-200 > open AF-Q8WZ42-F25-model_v1.pdb.gz AF-Q8WZ42-F25-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F25-model_v1.pdb.gz #8 --- Chain | Description A | TITIN > color bfactor #8 palette rainbow 10810 atoms, 1400 residues, atom bfactor range 56.9 to 95.8 > hide #8 cartoons > show #8 atoms > style #8 sphere Changed 10810 atom styles > align #8:196-200@CA toAtoms #7:1395-1399@CA RMSD between 5 atom pairs is 2.331 angstroms > delete #8:1-200 > open AF-Q8WZ42-F31-model_v1.pdb.gz AF-Q8WZ42-F31-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F31-model_v1.pdb.gz #9 --- Chain | Description A | TITIN > color bfactor #9 palette rainbow 10775 atoms, 1400 residues, atom bfactor range 32.6 to 96.2 > hide #9 cartoons > show #9 atoms > style #9 sphere Changed 10775 atom styles > align #9:196-200@CA toAtoms #8:1395-1399@CA RMSD between 5 atom pairs is 0.738 angstroms > delete #9:1-200 > open AF-Q8WZ42-F37-model_v1.pdb.gz AF-Q8WZ42-F37-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F37-model_v1.pdb.gz #10 --- Chain | Description A | TITIN > color bfactor #10 palette rainbow 10739 atoms, 1400 residues, atom bfactor range 27.3 to 94.7 > hide #10 cartoons > show #10 atoms > style #10 sphere Changed 10739 atom styles > align #10:196-200@CA toAtoms #9:1395-1399@CA RMSD between 5 atom pairs is 2.736 angstroms > delete #10:1-200 > open AF-Q8WZ42-F43-model_v1.pdb.gz AF-Q8WZ42-F43-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F43-model_v1.pdb.gz #11 --- Chain | Description A | TITIN > color bfactor #11 palette rainbow 10878 atoms, 1400 residues, atom bfactor range 4.74 to 96 > hide #11 cartoons > show #11 atoms > style #11 sphere Changed 10878 atom styles > align #11:196-200@CA toAtoms #10:1395-1399@CA RMSD between 5 atom pairs is 0.761 angstroms > delete #11:1-200 > open AF-Q8WZ42-F49-model_v1.pdb.gz AF-Q8WZ42-F49-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F49-model_v1.pdb.gz #12 --- Chain | Description A | TITIN > color bfactor #12 palette rainbow 11339 atoms, 1400 residues, atom bfactor range 22.2 to 98.3 > hide #12 cartoons > show #12 atoms > style #12 sphere Changed 11339 atom styles > align #12:196-200@CA toAtoms #11:1395-1399@CA RMSD between 5 atom pairs is 2.022 angstroms > delete #12:1-200 > open AF-Q8WZ42-F55-model_v1.pdb.gz AF-Q8WZ42-F55-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F55-model_v1.pdb.gz #13 --- Chain | Description A | TITIN > color bfactor #13 palette rainbow 10995 atoms, 1400 residues, atom bfactor range 24.9 to 98 > hide #13 cartoons > show #13 atoms > style #13 sphere Changed 10995 atom styles > align #13:196-200@CA toAtoms #12:1395-1399@CA RMSD between 5 atom pairs is 0.848 angstroms > delete #13:1-200 > open AF-Q8WZ42-F61-model_v1.pdb.gz AF-Q8WZ42-F61-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F61-model_v1.pdb.gz #14 --- Chain | Description A | TITIN > color bfactor #14 palette rainbow 11076 atoms, 1400 residues, atom bfactor range 28.9 to 96.7 > hide #14 cartoons > show #14 atoms > style #14 sphere Changed 11076 atom styles > align #14:196-200@CA toAtoms #13:1395-1399@CA RMSD between 5 atom pairs is 0.281 angstroms > delete #14:1-200 > open AF-Q8WZ42-F67-model_v1.pdb.gz AF-Q8WZ42-F67-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F67-model_v1.pdb.gz #15 --- Chain | Description A | TITIN > color bfactor #15 palette rainbow 11108 atoms, 1400 residues, atom bfactor range 17.2 to 96.2 > hide #15 cartoons > show #15 atoms > style #15 sphere Changed 11108 atom styles > align #15:196-200@CA toAtoms #14:1395-1399@CA RMSD between 5 atom pairs is 1.087 angstroms > delete #15:1-200 > open AF-Q8WZ42-F73-model_v1.pdb.gz AF-Q8WZ42-F73-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F73-model_v1.pdb.gz #16 --- Chain | Description A | TITIN > color bfactor #16 palette rainbow 10961 atoms, 1400 residues, atom bfactor range 32.8 to 96.4 > hide #16 cartoons > show #16 atoms > style #16 sphere Changed 10961 atom styles > align #16:196-200@CA toAtoms #15:1395-1399@CA RMSD between 5 atom pairs is 0.928 angstroms > delete #16:1-200 > open AF-Q8WZ42-F79-model_v1.pdb.gz AF-Q8WZ42-F79-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F79-model_v1.pdb.gz #17 --- Chain | Description A | TITIN > color bfactor #17 palette rainbow 10939 atoms, 1400 residues, atom bfactor range 31.6 to 96.9 > hide #17 cartoons > show #17 atoms > style #17 sphere Changed 10939 atom styles > align #17:196-200@CA toAtoms #16:1395-1399@CA RMSD between 5 atom pairs is 1.711 angstroms > delete #17:1-200 > open AF-Q8WZ42-F85-model_v1.pdb.gz AF-Q8WZ42-F85-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F85-model_v1.pdb.gz #18 --- Chain | Description A | TITIN > color bfactor #18 palette rainbow 10952 atoms, 1400 residues, atom bfactor range 33.1 to 97.6 > hide #18 cartoons > show #18 atoms > style #18 sphere Changed 10952 atom styles > align #18:196-200@CA toAtoms #17:1395-1399@CA RMSD between 5 atom pairs is 0.641 angstroms > delete #18:1-200 > open AF-Q8WZ42-F91-model_v1.pdb.gz AF-Q8WZ42-F91-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F91-model_v1.pdb.gz #19 --- Chain | Description A | TITIN > color bfactor #19 palette rainbow 10966 atoms, 1400 residues, atom bfactor range 50.4 to 96 > hide #19 cartoons > show #19 atoms > style #19 sphere Changed 10966 atom styles > align #19:196-200@CA toAtoms #18:1395-1399@CA RMSD between 5 atom pairs is 1.802 angstroms > delete #19:1-200 > open AF-Q8WZ42-F97-model_v1.pdb.gz AF-Q8WZ42-F97-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F97-model_v1.pdb.gz #20 --- Chain | Description A | TITIN > color bfactor #20 palette rainbow 10886 atoms, 1400 residues, atom bfactor range 54 to 97 > hide #20 cartoons > show #20 atoms > style #20 sphere Changed 10886 atom styles > align #20:196-200@CA toAtoms #19:1395-1399@CA RMSD between 5 atom pairs is 0.542 angstroms > delete #20:1-200 > open AF-Q8WZ42-F103-model_v1.pdb.gz AF-Q8WZ42-F103-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F103-model_v1.pdb.gz #21 --- Chain | Description A | TITIN > color bfactor #21 palette rainbow 10883 atoms, 1400 residues, atom bfactor range 36.8 to 96.9 > hide #21 cartoons > show #21 atoms > style #21 sphere Changed 10883 atom styles > align #21:196-200@CA toAtoms #20:1395-1399@CA RMSD between 5 atom pairs is 2.342 angstroms > delete #21:1-200 > open AF-Q8WZ42-F109-model_v1.pdb.gz AF-Q8WZ42-F109-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F109-model_v1.pdb.gz #22 --- Chain | Description A | TITIN > color bfactor #22 palette rainbow 10863 atoms, 1400 residues, atom bfactor range 15.6 to 96.8 > hide #22 cartoons > show #22 atoms > style #22 sphere Changed 10863 atom styles > align #22:196-200@CA toAtoms #21:1395-1399@CA RMSD between 5 atom pairs is 0.968 angstroms > delete #22:1-200 > open AF-Q8WZ42-F115-model_v1.pdb.gz AF-Q8WZ42-F115-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F115-model_v1.pdb.gz #23 --- Chain | Description A | TITIN > color bfactor #23 palette rainbow 10882 atoms, 1400 residues, atom bfactor range 44.7 to 96.8 > hide #23 cartoons > show #23 atoms > style #23 sphere Changed 10882 atom styles > align #23:196-200@CA toAtoms #22:1395-1399@CA RMSD between 5 atom pairs is 1.242 angstroms > delete #23:1-200 > open AF-Q8WZ42-F121-model_v1.pdb.gz AF-Q8WZ42-F121-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F121-model_v1.pdb.gz #24 --- Chain | Description A | TITIN > color bfactor #24 palette rainbow 10876 atoms, 1400 residues, atom bfactor range 37.7 to 97.7 > hide #24 cartoons > show #24 atoms > style #24 sphere Changed 10876 atom styles > align #24:196-200@CA toAtoms #23:1395-1399@CA RMSD between 5 atom pairs is 0.480 angstroms > delete #24:1-200 > open AF-Q8WZ42-F127-model_v1.pdb.gz AF-Q8WZ42-F127-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F127-model_v1.pdb.gz #25 --- Chain | Description A | TITIN > color bfactor #25 palette rainbow 10848 atoms, 1400 residues, atom bfactor range 32.1 to 97.4 > hide #25 cartoons > show #25 atoms > style #25 sphere Changed 10848 atom styles > align #25:196-200@CA toAtoms #24:1395-1399@CA RMSD between 5 atom pairs is 2.398 angstroms > delete #25:1-200 > open AF-Q8WZ42-F133-model_v1.pdb.gz AF-Q8WZ42-F133-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F133-model_v1.pdb.gz #26 --- Chain | Description A | TITIN > color bfactor #26 palette rainbow 10875 atoms, 1400 residues, atom bfactor range 33.1 to 96.7 > hide #26 cartoons > show #26 atoms > style #26 sphere Changed 10875 atom styles > align #26:196-200@CA toAtoms #25:1395-1399@CA RMSD between 5 atom pairs is 1.181 angstroms > delete #26:1-200 > open AF-Q8WZ42-F139-model_v1.pdb.gz AF-Q8WZ42-F139-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F139-model_v1.pdb.gz #27 --- Chain | Description A | TITIN > color bfactor #27 palette rainbow 10875 atoms, 1400 residues, atom bfactor range 44.4 to 96.7 > hide #27 cartoons > show #27 atoms > style #27 sphere Changed 10875 atom styles > align #27:196-200@CA toAtoms #26:1395-1399@CA RMSD between 5 atom pairs is 0.895 angstroms > delete #27:1-200 > open AF-Q8WZ42-F145-model_v1.pdb.gz AF-Q8WZ42-F145-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F145-model_v1.pdb.gz #28 --- Chain | Description A | TITIN > color bfactor #28 palette rainbow 10871 atoms, 1400 residues, atom bfactor range 41.8 to 96.4 > hide #28 cartoons > show #28 atoms > style #28 sphere Changed 10871 atom styles > align #28:196-200@CA toAtoms #27:1395-1399@CA RMSD between 5 atom pairs is 0.459 angstroms > delete #28:1-200 > open AF-Q8WZ42-F151-model_v1.pdb.gz AF-Q8WZ42-F151-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F151-model_v1.pdb.gz #29 --- Chain | Description A | TITIN > color bfactor #29 palette rainbow 10955 atoms, 1400 residues, atom bfactor range 55 to 96.3 > hide #29 cartoons > show #29 atoms > style #29 sphere Changed 10955 atom styles > align #29:196-200@CA toAtoms #28:1395-1399@CA RMSD between 5 atom pairs is 1.067 angstroms > delete #29:1-200 > open AF-Q8WZ42-F157-model_v1.pdb.gz AF-Q8WZ42-F157-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F157-model_v1.pdb.gz #30 --- Chain | Description A | TITIN > color bfactor #30 palette rainbow 11139 atoms, 1400 residues, atom bfactor range 28 to 98 > hide #30 cartoons > show #30 atoms > style #30 sphere Changed 11139 atom styles > align #30:196-200@CA toAtoms #29:1395-1399@CA RMSD between 5 atom pairs is 1.180 angstroms > delete #30:1-200 > open AF-Q8WZ42-F163-model_v1.pdb.gz AF-Q8WZ42-F163-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F163-model_v1.pdb.gz #31 --- Chain | Description A | TITIN > color bfactor #31 palette rainbow 11317 atoms, 1400 residues, atom bfactor range 25.2 to 94.8 > hide #31 cartoons > show #31 atoms > style #31 sphere Changed 11317 atom styles > align #31:196-200@CA toAtoms #30:1395-1399@CA RMSD between 5 atom pairs is 1.715 angstroms > delete #31:1-200 > open AF-Q8WZ42-F166-model_v1.pdb.gz AF-Q8WZ42-F166-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F166-model_v1.pdb.gz #32 --- Chain | Description A | TITIN > color bfactor #32 palette rainbow 10581 atoms, 1350 residues, atom bfactor range 25.4 to 96.8 > hide #32 cartoons > show #32 atoms > style #32 sphere Changed 10581 atom styles > align #32:796-800@CA toAtoms #31:1395-1399@CA RMSD between 5 atom pairs is 0.716 angstroms > delete #32:1-800 Traceback (most recent call last): File ""/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/cmd_line/tool.py"", line 280, in execute cmd.run(cmd_text) File ""/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/core/commands/cli.py"", line 2852, in run result = ci.function(session, **kw_args) File ""bigalpha.py"", line 64, in open_multifile_alphafold_model File ""bigalpha.py"", line 102, in shift_residue_numbers AttributeError: can't set attribute AttributeError: can't set attribute File ""bigalpha.py"", line 102, in shift_residue_numbers See log for complete Python traceback. > hide #1 models > hide #2 models > hide #3 models > close > open ../bigalpha.py FYI: command is replacing existing command: ""bigalpha"" executed bigalpha.py > bigalpha Q8WZ42 AlphaFold Q8WZ42 is split into 166 mmCIF files > open AF-Q8WZ42-F1-model_v1.pdb.gz AF-Q8WZ42-F1-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F1-model_v1.pdb.gz #1 --- Chain | Description A | TITIN > color bfactor #1 palette redblue 10797 atoms, 1400 residues, atom bfactor range 24.8 to 96.7 > hide #1 cartoons > show #1 atoms > style #1 sphere Changed 10797 atom styles > open AF-Q8WZ42-F7-model_v1.pdb.gz AF-Q8WZ42-F7-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F7-model_v1.pdb.gz #2 --- Chain | Description A | TITIN > color bfactor #2 palette redblue 11244 atoms, 1400 residues, atom bfactor range 26.2 to 97 > hide #2 cartoons > show #2 atoms > style #2 sphere Changed 11244 atom styles > align #2:196-200@CA toAtoms #1:1395-1399@CA RMSD between 5 atom pairs is 1.585 angstroms > delete #2:1-200 > open AF-Q8WZ42-F13-model_v1.pdb.gz AF-Q8WZ42-F13-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F13-model_v1.pdb.gz #3 --- Chain | Description A | TITIN > color bfactor #3 palette redblue 11015 atoms, 1400 residues, atom bfactor range 24.5 to 96.6 > hide #3 cartoons > show #3 atoms > style #3 sphere Changed 11015 atom styles > align #3:196-200@CA toAtoms #2:1395-1399@CA RMSD between 5 atom pairs is 1.103 angstroms > delete #3:1-200 > open AF-Q8WZ42-F19-model_v1.pdb.gz AF-Q8WZ42-F19-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F19-model_v1.pdb.gz #4 --- Chain | Description A | TITIN > color bfactor #4 palette redblue 10832 atoms, 1400 residues, atom bfactor range 22.8 to 96.8 > hide #4 cartoons > show #4 atoms > style #4 sphere Changed 10832 atom styles > align #4:196-200@CA toAtoms #3:1395-1399@CA RMSD between 5 atom pairs is 0.465 angstroms > delete #4:1-200 > open AF-Q8WZ42-F25-model_v1.pdb.gz AF-Q8WZ42-F25-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F25-model_v1.pdb.gz #5 --- Chain | Description A | TITIN > color bfactor #5 palette redblue 10810 atoms, 1400 residues, atom bfactor range 56.9 to 95.8 > hide #5 cartoons > show #5 atoms > style #5 sphere Changed 10810 atom styles > align #5:196-200@CA toAtoms #4:1395-1399@CA RMSD between 5 atom pairs is 2.331 angstroms > delete #5:1-200 > open AF-Q8WZ42-F31-model_v1.pdb.gz AF-Q8WZ42-F31-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F31-model_v1.pdb.gz #6 --- Chain | Description A | TITIN > color bfactor #6 palette redblue 10775 atoms, 1400 residues, atom bfactor range 32.6 to 96.2 > hide #6 cartoons > show #6 atoms > style #6 sphere Changed 10775 atom styles > align #6:196-200@CA toAtoms #5:1395-1399@CA RMSD between 5 atom pairs is 0.738 angstroms > delete #6:1-200 > open AF-Q8WZ42-F37-model_v1.pdb.gz AF-Q8WZ42-F37-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F37-model_v1.pdb.gz #7 --- Chain | Description A | TITIN > color bfactor #7 palette redblue 10739 atoms, 1400 residues, atom bfactor range 27.3 to 94.7 > hide #7 cartoons > show #7 atoms > style #7 sphere Changed 10739 atom styles > align #7:196-200@CA toAtoms #6:1395-1399@CA RMSD between 5 atom pairs is 2.736 angstroms > delete #7:1-200 > open AF-Q8WZ42-F43-model_v1.pdb.gz AF-Q8WZ42-F43-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F43-model_v1.pdb.gz #8 --- Chain | Description A | TITIN > color bfactor #8 palette redblue 10878 atoms, 1400 residues, atom bfactor range 4.74 to 96 > hide #8 cartoons > show #8 atoms > style #8 sphere Changed 10878 atom styles > align #8:196-200@CA toAtoms #7:1395-1399@CA RMSD between 5 atom pairs is 0.761 angstroms > delete #8:1-200 > open AF-Q8WZ42-F49-model_v1.pdb.gz AF-Q8WZ42-F49-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F49-model_v1.pdb.gz #9 --- Chain | Description A | TITIN > color bfactor #9 palette redblue 11339 atoms, 1400 residues, atom bfactor range 22.2 to 98.3 > hide #9 cartoons > show #9 atoms > style #9 sphere Changed 11339 atom styles > align #9:196-200@CA toAtoms #8:1395-1399@CA RMSD between 5 atom pairs is 2.022 angstroms > delete #9:1-200 > open AF-Q8WZ42-F55-model_v1.pdb.gz AF-Q8WZ42-F55-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F55-model_v1.pdb.gz #10 --- Chain | Description A | TITIN > color bfactor #10 palette redblue 10995 atoms, 1400 residues, atom bfactor range 24.9 to 98 > hide #10 cartoons > show #10 atoms > style #10 sphere Changed 10995 atom styles > align #10:196-200@CA toAtoms #9:1395-1399@CA RMSD between 5 atom pairs is 0.848 angstroms > delete #10:1-200 > open AF-Q8WZ42-F61-model_v1.pdb.gz AF-Q8WZ42-F61-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F61-model_v1.pdb.gz #11 --- Chain | Description A | TITIN > color bfactor #11 palette redblue 11076 atoms, 1400 residues, atom bfactor range 28.9 to 96.7 > hide #11 cartoons > show #11 atoms > style #11 sphere Changed 11076 atom styles > align #11:196-200@CA toAtoms #10:1395-1399@CA RMSD between 5 atom pairs is 0.281 angstroms > delete #11:1-200 > open AF-Q8WZ42-F67-model_v1.pdb.gz AF-Q8WZ42-F67-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F67-model_v1.pdb.gz #12 --- Chain | Description A | TITIN > color bfactor #12 palette redblue 11108 atoms, 1400 residues, atom bfactor range 17.2 to 96.2 > hide #12 cartoons > show #12 atoms > style #12 sphere Changed 11108 atom styles > align #12:196-200@CA toAtoms #11:1395-1399@CA RMSD between 5 atom pairs is 1.087 angstroms > delete #12:1-200 > open AF-Q8WZ42-F73-model_v1.pdb.gz AF-Q8WZ42-F73-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F73-model_v1.pdb.gz #13 --- Chain | Description A | TITIN > color bfactor #13 palette redblue 10961 atoms, 1400 residues, atom bfactor range 32.8 to 96.4 > hide #13 cartoons > show #13 atoms > style #13 sphere Changed 10961 atom styles > align #13:196-200@CA toAtoms #12:1395-1399@CA RMSD between 5 atom pairs is 0.928 angstroms > delete #13:1-200 > open AF-Q8WZ42-F79-model_v1.pdb.gz AF-Q8WZ42-F79-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F79-model_v1.pdb.gz #14 --- Chain | Description A | TITIN > color bfactor #14 palette redblue 10939 atoms, 1400 residues, atom bfactor range 31.6 to 96.9 > hide #14 cartoons > show #14 atoms > style #14 sphere Changed 10939 atom styles > align #14:196-200@CA toAtoms #13:1395-1399@CA RMSD between 5 atom pairs is 1.711 angstroms > delete #14:1-200 > open AF-Q8WZ42-F85-model_v1.pdb.gz AF-Q8WZ42-F85-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F85-model_v1.pdb.gz #15 --- Chain | Description A | TITIN > color bfactor #15 palette redblue 10952 atoms, 1400 residues, atom bfactor range 33.1 to 97.6 > hide #15 cartoons > show #15 atoms > style #15 sphere Changed 10952 atom styles > align #15:196-200@CA toAtoms #14:1395-1399@CA RMSD between 5 atom pairs is 0.641 angstroms > delete #15:1-200 > open AF-Q8WZ42-F91-model_v1.pdb.gz AF-Q8WZ42-F91-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F91-model_v1.pdb.gz #16 --- Chain | Description A | TITIN > color bfactor #16 palette redblue 10966 atoms, 1400 residues, atom bfactor range 50.4 to 96 > hide #16 cartoons > show #16 atoms > style #16 sphere Changed 10966 atom styles > align #16:196-200@CA toAtoms #15:1395-1399@CA RMSD between 5 atom pairs is 1.802 angstroms > delete #16:1-200 > open AF-Q8WZ42-F97-model_v1.pdb.gz AF-Q8WZ42-F97-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F97-model_v1.pdb.gz #17 --- Chain | Description A | TITIN > color bfactor #17 palette redblue 10886 atoms, 1400 residues, atom bfactor range 54 to 97 > hide #17 cartoons > show #17 atoms > style #17 sphere Changed 10886 atom styles > align #17:196-200@CA toAtoms #16:1395-1399@CA RMSD between 5 atom pairs is 0.542 angstroms > delete #17:1-200 > open AF-Q8WZ42-F103-model_v1.pdb.gz AF-Q8WZ42-F103-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F103-model_v1.pdb.gz #18 --- Chain | Description A | TITIN > color bfactor #18 palette redblue 10883 atoms, 1400 residues, atom bfactor range 36.8 to 96.9 > hide #18 cartoons > show #18 atoms > style #18 sphere Changed 10883 atom styles > align #18:196-200@CA toAtoms #17:1395-1399@CA RMSD between 5 atom pairs is 2.342 angstroms > delete #18:1-200 > open AF-Q8WZ42-F109-model_v1.pdb.gz AF-Q8WZ42-F109-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F109-model_v1.pdb.gz #19 --- Chain | Description A | TITIN > color bfactor #19 palette redblue 10863 atoms, 1400 residues, atom bfactor range 15.6 to 96.8 > hide #19 cartoons > show #19 atoms > style #19 sphere Changed 10863 atom styles > align #19:196-200@CA toAtoms #18:1395-1399@CA RMSD between 5 atom pairs is 0.968 angstroms > delete #19:1-200 > open AF-Q8WZ42-F115-model_v1.pdb.gz AF-Q8WZ42-F115-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F115-model_v1.pdb.gz #20 --- Chain | Description A | TITIN > color bfactor #20 palette redblue 10882 atoms, 1400 residues, atom bfactor range 44.7 to 96.8 > hide #20 cartoons > show #20 atoms > style #20 sphere Changed 10882 atom styles > align #20:196-200@CA toAtoms #19:1395-1399@CA RMSD between 5 atom pairs is 1.242 angstroms > delete #20:1-200 > open AF-Q8WZ42-F121-model_v1.pdb.gz AF-Q8WZ42-F121-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F121-model_v1.pdb.gz #21 --- Chain | Description A | TITIN > color bfactor #21 palette redblue 10876 atoms, 1400 residues, atom bfactor range 37.7 to 97.7 > hide #21 cartoons > show #21 atoms > style #21 sphere Changed 10876 atom styles > align #21:196-200@CA toAtoms #20:1395-1399@CA RMSD between 5 atom pairs is 0.480 angstroms > delete #21:1-200 > open AF-Q8WZ42-F127-model_v1.pdb.gz AF-Q8WZ42-F127-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F127-model_v1.pdb.gz #22 --- Chain | Description A | TITIN > color bfactor #22 palette redblue 10848 atoms, 1400 residues, atom bfactor range 32.1 to 97.4 > hide #22 cartoons > show #22 atoms > style #22 sphere Changed 10848 atom styles > align #22:196-200@CA toAtoms #21:1395-1399@CA RMSD between 5 atom pairs is 2.398 angstroms > delete #22:1-200 > open AF-Q8WZ42-F133-model_v1.pdb.gz AF-Q8WZ42-F133-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F133-model_v1.pdb.gz #23 --- Chain | Description A | TITIN > color bfactor #23 palette redblue 10875 atoms, 1400 residues, atom bfactor range 33.1 to 96.7 > hide #23 cartoons > show #23 atoms > style #23 sphere Changed 10875 atom styles > align #23:196-200@CA toAtoms #22:1395-1399@CA RMSD between 5 atom pairs is 1.181 angstroms > delete #23:1-200 > open AF-Q8WZ42-F139-model_v1.pdb.gz AF-Q8WZ42-F139-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F139-model_v1.pdb.gz #24 --- Chain | Description A | TITIN > color bfactor #24 palette redblue 10875 atoms, 1400 residues, atom bfactor range 44.4 to 96.7 > hide #24 cartoons > show #24 atoms > style #24 sphere Changed 10875 atom styles > align #24:196-200@CA toAtoms #23:1395-1399@CA RMSD between 5 atom pairs is 0.895 angstroms > delete #24:1-200 > open AF-Q8WZ42-F145-model_v1.pdb.gz AF-Q8WZ42-F145-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F145-model_v1.pdb.gz #25 --- Chain | Description A | TITIN > color bfactor #25 palette redblue 10871 atoms, 1400 residues, atom bfactor range 41.8 to 96.4 > hide #25 cartoons > show #25 atoms > style #25 sphere Changed 10871 atom styles > align #25:196-200@CA toAtoms #24:1395-1399@CA RMSD between 5 atom pairs is 0.459 angstroms > delete #25:1-200 > open AF-Q8WZ42-F151-model_v1.pdb.gz AF-Q8WZ42-F151-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F151-model_v1.pdb.gz #26 --- Chain | Description A | TITIN > color bfactor #26 palette redblue 10955 atoms, 1400 residues, atom bfactor range 55 to 96.3 > hide #26 cartoons > show #26 atoms > style #26 sphere Changed 10955 atom styles > align #26:196-200@CA toAtoms #25:1395-1399@CA RMSD between 5 atom pairs is 1.067 angstroms > delete #26:1-200 > open AF-Q8WZ42-F157-model_v1.pdb.gz AF-Q8WZ42-F157-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F157-model_v1.pdb.gz #27 --- Chain | Description A | TITIN > color bfactor #27 palette redblue 11139 atoms, 1400 residues, atom bfactor range 28 to 98 > hide #27 cartoons > show #27 atoms > style #27 sphere Changed 11139 atom styles > align #27:196-200@CA toAtoms #26:1395-1399@CA RMSD between 5 atom pairs is 1.180 angstroms > delete #27:1-200 > open AF-Q8WZ42-F163-model_v1.pdb.gz AF-Q8WZ42-F163-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F163-model_v1.pdb.gz #28 --- Chain | Description A | TITIN > color bfactor #28 palette redblue 11317 atoms, 1400 residues, atom bfactor range 25.2 to 94.8 > hide #28 cartoons > show #28 atoms > style #28 sphere Changed 11317 atom styles > align #28:196-200@CA toAtoms #27:1395-1399@CA RMSD between 5 atom pairs is 1.715 angstroms > delete #28:1-200 > open AF-Q8WZ42-F166-model_v1.pdb.gz AF-Q8WZ42-F166-model_v1.pdb.gz title: Alphafold V2.0 prediction for titin (Q8WZ42) [more info...] Chain information for AF-Q8WZ42-F166-model_v1.pdb.gz #29 --- Chain | Description A | TITIN > color bfactor #29 palette redblue 10581 atoms, 1350 residues, atom bfactor range 25.4 to 96.8 > hide #29 cartoons > show #29 atoms > style #29 sphere Changed 10581 atom styles > align #29:796-800@CA toAtoms #28:1395-1399@CA RMSD between 5 atom pairs is 0.716 angstroms > delete #29:1-800 Traceback (most recent call last): File ""/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/cmd_line/tool.py"", line 280, in execute cmd.run(cmd_text) File ""/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/core/commands/cli.py"", line 2852, in run result = ci.function(session, **kw_args) File ""../bigalpha.py"", line 64, in open_multifile_alphafold_model shift_residue_numbers(models) File ""../bigalpha.py"", line 102, in shift_residue_numbers m.residues.numbers += rnext - rmin AttributeError: can't set attribute AttributeError: can't set attribute File ""../bigalpha.py"", line 102, in shift_residue_numbers m.residues.numbers += rnext - rmin See log for complete Python traceback. OpenGL version: 4.1 Metal - 71.0.7 OpenGL renderer: Apple M1 OpenGL vendor: AppleHardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro17,1 Processor Name: Unknown Processor Speed: 2.4 GHz Number of Processors: 1 Total Number of Cores: 8 L2 Cache (per Core): 4 MB Memory: 16 GB Software: System Software Overview: System Version: macOS 11.2.3 (20D91) Kernel Version: Darwin 20.3.0 Time since boot: 14 days 16:38 Graphics/Displays: Apple M1: Chipset Model: Apple M1 Type: GPU Bus: Built-In Total Number of Cores: 8 Vendor: Apple (0x106b) Metal Family: Supported, Metal GPUFamily Apple 7 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal Locale: (None, 'UTF-8') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.2 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2020.12.5 cftime: 1.5.0 chardet: 3.0.4 ChimeraX-AddCharge: 1.0.1 ChimeraX-AddH: 2.1.6 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.13.2 ChimeraX-AtomicLibrary: 3.1.3 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 1.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.5.2 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.1 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.1 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.2.1 ChimeraX-CommandLine: 1.1.4 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.2.5 ChimeraX-CoreFormats: 1.0 ChimeraX-coulombic: 1.1.1 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.1 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.3 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.0 ChimeraX-Hbonds: 2.1 ChimeraX-Help: 1.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.0 ChimeraX-ImageFormats: 1.1 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-Label: 1.0 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.0.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.0 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 1.2.1 ChimeraX-MDcrds: 2.2 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.3 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.0.1 ChimeraX-ModelPanel: 1.0.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.1 ChimeraX-OpenCommand: 1.5 ChimeraX-PDB: 2.4.1 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.1 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.0.1 ChimeraX-ReadPbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.4 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SeqView: 2.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.0 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.0.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.3.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.0.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.7.6 ChimeraX-uniprot: 2.1 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.3 comtypes: 1.1.7 cxservices: 1.0 cycler: 0.10.0 Cython: 0.29.21 decorator: 5.0.9 distlib: 0.3.1 docutils: 0.16 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 2.10.0 html2text: 2020.1.16 idna: 2.10 ihm: 0.17 imagecodecs: 2020.5.30 imagesize: 1.2.0 ipykernel: 5.3.4 ipython: 7.18.1 ipython-genutils: 0.2.0 jedi: 0.17.2 Jinja2: 2.11.2 jupyter-client: 6.1.7 jupyter-core: 4.7.1 kiwisolver: 1.3.1 line-profiler: 2.1.2 lxml: 4.6.2 lz4: 3.1.0 MarkupSafe: 2.0.1 matplotlib: 3.3.2 matplotlib-inline: 0.1.2 msgpack: 1.0.0 netCDF4: 1.5.4 networkx: 2.5 numexpr: 2.7.3 numpy: 1.19.2 numpydoc: 1.1.0 openvr: 1.14.1501 packaging: 20.9 ParmEd: 3.2.0 parso: 0.7.1 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 7.2.0 pip: 21.0.1 pkginfo: 1.5.0.1 prompt-toolkit: 3.0.18 psutil: 5.7.2 ptyprocess: 0.7.0 pycollada: 0.7.1 pydicom: 2.0.0 Pygments: 2.7.1 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.1 pytz: 2021.1 pyzmq: 22.0.3 qtconsole: 4.7.7 QtPy: 1.9.0 RandomWords: 0.3.0 requests: 2.24.0 scipy: 1.5.2 setuptools: 50.3.2 sfftk-rw: 0.6.7.dev1 six: 1.15.0 snowballstemmer: 2.1.0 sortedcontainers: 2.2.2 Sphinx: 3.2.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2020.9.3 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.0.5 urllib3: 1.25.11 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.36.0 wheel-filename: 1.3.0 }}} " defect closed normal Sequence not a bug Eric Pettersen all ChimeraX