id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 5172 Graphics driver crash, macOS 11.3.1, Intel UHD Graphics 617 ashlee.finch23@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Aborted Current thread 0x000000010dc01e00 (most recent call first): File ""/private/var/folders/dg/9gq_m_bj7kzbcydqbyqlltgr0000gn/T/AppTranslocation/3ED14955-48FD-4367-82D2-2ED526607BB3/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/graphics/opengl.py"", line 226 in swap_buffers File ""/private/var/folders/dg/9gq_m_bj7kzbcydqbyqlltgr0000gn/T/AppTranslocation/3ED14955-48FD-4367-82D2-2ED526607BB3/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/graphics/opengl.py"", line 484 in swap_buffers File ""/private/var/folders/dg/9gq_m_bj7kzbcydqbyqlltgr0000gn/T/AppTranslocation/3ED14955-48FD-4367-82D2-2ED526607BB3/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/graphics/view.py"", line 179 in draw File ""/private/var/folders/dg/9gq_m_bj7kzbcydqbyqlltgr0000gn/T/AppTranslocation/3ED14955-48FD-4367-82D2-2ED526607BB3/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/updateloop.py"", line 73 in draw_new_frame File ""/private/var/folders/dg/9gq_m_bj7kzbcydqbyqlltgr0000gn/T/AppTranslocation/3ED14955-48FD-4367-82D2-2ED526607BB3/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/updateloop.py"", line 138 in _redraw_timer_callback File ""/private/var/folders/dg/9gq_m_bj7kzbcydqbyqlltgr0000gn/T/AppTranslocation/3ED14955-48FD-4367-82D2-2ED526607BB3/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/ui/gui.py"", line 293 in event_loop File ""/private/var/folders/dg/9gq_m_bj7kzbcydqbyqlltgr0000gn/T/AppTranslocation/3ED14955-48FD-4367-82D2-2ED526607BB3/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py"", line 866 in init File ""/private/var/folders/dg/9gq_m_bj7kzbcydqbyqlltgr0000gn/T/AppTranslocation/3ED14955-48FD-4367-82D2-2ED526607BB3/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py"", line 1015 in File ""/private/var/folders/dg/9gq_m_bj7kzbcydqbyqlltgr0000gn/T/AppTranslocation/3ED14955-48FD-4367-82D2-2ED526607BB3/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py"", line 87 in _run_code File ""/private/var/folders/dg/9gq_m_bj7kzbcydqbyqlltgr0000gn/T/AppTranslocation/3ED14955-48FD-4367-82D2-2ED526607BB3/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py"", line 194 in _run_module_as_main Process: ChimeraX [42963] Path: /Volumes/VOLUME/*/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX Identifier: ChimeraX Version: ??? Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: ChimeraX [42963] User ID: 501 Date/Time: 2021-09-06 14:36:24.384 +1000 OS Version: macOS 11.3.1 (20E241) Report Version: 12 Bridge OS Version: 5.3 (18P4556) Anonymous UUID: 46E23448-318B-E8F4-CF57-1AC31492E2CD Sleep/Wake UUID: 3B3DE14F-70A7-4A2E-B0A0-2618C7FE6E6C Time Awake Since Boot: 1200000 seconds Time Since Wake: 890 seconds System Integrity Protection: enabled Notes: Translocated Process Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread Exception Type: EXC_CRASH (SIGABRT) Exception Codes: 0x0000000000000000, 0x0000000000000000 Exception Note: EXC_CORPSE_NOTIFY Application Specific Information: abort() called Application Specific Signatures: Graphics hardware encountered an error and was reset: 0x00000813 Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread 0 libsystem_kernel.dylib 0x00007fff203f0946 __pthread_kill + 10 1 libsystem_pthread.dylib 0x00007fff2041f615 pthread_kill + 263 2 libsystem_c.dylib 0x00007fff20303be5 raise + 26 3 libsystem_platform.dylib 0x00007fff20464d7d _sigtramp + 29 4 ??? 000000000000000000 0 + 0 5 libsystem_c.dylib 0x00007fff20374411 abort + 120 6 libGPUSupportMercury.dylib 0x00007fff4627d0a6 gpusGenerateCrashLog.cold.1 + 95 7 libGPUSupportMercury.dylib 0x00007fff46274238 gpusGenerateCrashLog + 89 8 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff5fb21c89 gpusKillClientExt + 9 9 libGPUSupportMercury.dylib 0x00007fff46275749 gpusSubmitDataBuffers + 490 10 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff5edb2d3a IntelCommandBuffer::getNew(GLDContextRec*) + 48 11 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff5edb2b4e intelSubmitCommands + 171 12 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff5eed8978 gldPresentFramebufferData + 120 13 GLEngine 0x00007fff6bbcdaf1 glSwap_Exec + 97 14 com.apple.opengl 0x00007fff6b9932eb CGLFlushDrawable + 59 15 com.apple.AppKit 0x00007fff230897c0 -[NSOpenGLContext flushBuffer] + 20 16 libqcocoa.dylib 0x000000011fefef5d QCocoaGLContext::swapBuffers(QPlatformSurface*) + 541 17 QtGui 0x000000011263813c QOpenGLContext::swapBuffers(QSurface*) + 412 18 QtGui.abi3.so 0x000000010d7a200f meth_QOpenGLContext_swapBuffers(_object*, _object*) + 95 19 org.python.python 0x0000000105ada0c2 cfunction_call_varargs + 290 20 org.python.python 0x0000000105ad9a85 _PyObject_MakeTpCall + 373 21 org.python.python 0x0000000105ba8665 call_function + 533 22 org.python.python 0x0000000105ba546e _PyEval_EvalFrameDefault + 25678 23 org.python.python 0x0000000105ba9454 _PyEval_EvalCodeWithName + 2804 24 org.python.python 0x0000000105ada56e _PyFunction_Vectorcall + 270 25 org.python.python 0x0000000105ba860c call_function + 444 26 org.python.python 0x0000000105ba544a _PyEval_EvalFrameDefault + 25642 27 org.python.python 0x0000000105ada3d0 function_code_fastcall + 128 28 org.python.python 0x0000000105ba860c call_function + 444 29 org.python.python 0x0000000105ba544a _PyEval_EvalFrameDefault + 25642 30 org.python.python 0x0000000105ba9454 _PyEval_EvalCodeWithName + 2804 31 org.python.python 0x0000000105ada56e _PyFunction_Vectorcall + 270 32 org.python.python 0x0000000105adca9a method_vectorcall + 170 33 org.python.python 0x0000000105ba860c call_function + 444 34 org.python.python 0x0000000105ba5598 _PyEval_EvalFrameDefault + 25976 35 org.python.python 0x0000000105ada3d0 function_code_fastcall + 128 36 org.python.python 0x0000000105ba860c call_function + 444 37 org.python.python 0x0000000105ba544a _PyEval_EvalFrameDefault + 25642 38 org.python.python 0x0000000105ada3d0 function_code_fastcall + 128 39 org.python.python 0x0000000105adcadb method_vectorcall + 235 40 org.python.python 0x0000000105ad9dad PyVectorcall_Call + 109 41 QtCore.abi3.so 0x000000010cdc2957 PyQtSlot::call(_object*, _object*) const + 39 42 QtCore.abi3.so 0x000000010cdc2866 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374 43 QtCore.abi3.so 0x000000010cdc3455 PyQtSlotProxy::unislot(void**) + 85 44 QtCore.abi3.so 0x000000010cdc33ca PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58 45 QtCore 0x000000010d1a6f6e void doActivate(QObject*, int, void**) + 1118 46 QtCore 0x000000010d1b04c2 QTimer::timerEvent(QTimerEvent*) + 98 47 QtCore.abi3.so 0x000000010ccabbf9 sipQTimer::timerEvent(QTimerEvent*) + 121 48 QtCore 0x000000010d19e85f QObject::event(QEvent*) + 111 49 QtCore.abi3.so 0x000000010ccaba7a sipQTimer::event(QEvent*) + 186 50 QtWidgets 0x0000000111f7f9ea QApplicationPrivate::notify_helper(QObject*, QEvent*) + 266 51 QtWidgets 0x0000000111f80e11 QApplication::notify(QObject*, QEvent*) + 497 52 QtWidgets.abi3.so 0x0000000111b32db9 sipQApplication::notify(QObject*, QEvent*) + 233 53 QtCore 0x000000010d173a34 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212 54 QtCore 0x000000010d1d935f QTimerInfoList::activateTimers() + 991 55 libqcocoa.dylib 0x000000011fedd8f2 QCocoaEventDispatcherPrivate::activateTimersSourceCallback(void*) + 18 56 com.apple.CoreFoundation 0x00007fff20518a8c __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17 57 com.apple.CoreFoundation 0x00007fff205189f4 __CFRunLoopDoSource0 + 180 58 com.apple.CoreFoundation 0x00007fff20518774 __CFRunLoopDoSources0 + 242 59 com.apple.CoreFoundation 0x00007fff2051719c __CFRunLoopRun + 893 60 com.apple.CoreFoundation 0x00007fff2051675c CFRunLoopRunSpecific + 563 61 com.apple.HIToolbox 0x00007fff28738203 RunCurrentEventLoopInMode + 292 62 com.apple.HIToolbox 0x00007fff28737e36 ReceiveNextEventCommon + 284 63 com.apple.HIToolbox 0x00007fff28737d03 _BlockUntilNextEventMatchingListInModeWithFilter + 70 64 com.apple.AppKit 0x00007fff22d12b32 _DPSNextEvent + 864 65 com.apple.AppKit 0x00007fff22d11305 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1364 66 com.apple.AppKit 0x00007fff22d03679 -[NSApplication run] + 586 67 libqcocoa.dylib 0x000000011fede62f QCocoaEventDispatcher::processEvents(QFlags) + 2495 68 QtCore 0x000000010d16facf QEventLoop::exec(QFlags) + 431 69 QtCore 0x000000010d174042 QCoreApplication::exec() + 130 70 QtWidgets.abi3.so 0x0000000111c24702 meth_QApplication_exec_(_object*, _object*) + 82 71 org.python.python 0x0000000105ada0c2 cfunction_call_varargs + 290 72 org.python.python 0x0000000105ad9a85 _PyObject_MakeTpCall + 373 73 org.python.python 0x0000000105ba8665 call_function + 533 74 org.python.python 0x0000000105ba546e _PyEval_EvalFrameDefault + 25678 75 org.python.python 0x0000000105ada3d0 function_code_fastcall + 128 76 org.python.python 0x0000000105adca9a method_vectorcall + 170 77 org.python.python 0x0000000105ba860c call_function + 444 78 org.python.python 0x0000000105ba546e _PyEval_EvalFrameDefault + 25678 79 org.python.python 0x0000000105ba9454 _PyEval_EvalCodeWithName + 2804 80 org.python.python 0x0000000105ada56e _PyFunction_Vectorcall + 270 81 org.python.python 0x0000000105ba860c call_function + 444 82 org.python.python 0x0000000105ba5505 _PyEval_EvalFrameDefault + 25829 83 org.python.python 0x0000000105ba9454 _PyEval_EvalCodeWithName + 2804 84 org.python.python 0x0000000105b9ef44 PyEval_EvalCode + 100 85 org.python.python 0x0000000105b9c332 builtin_exec + 626 86 org.python.python 0x0000000105b165ff cfunction_vectorcall_FASTCALL + 175 87 org.python.python 0x0000000105ba860c call_function + 444 88 org.python.python 0x0000000105ba5505 _PyEval_EvalFrameDefault + 25829 89 org.python.python 0x0000000105ba9454 _PyEval_EvalCodeWithName + 2804 90 org.python.python 0x0000000105ada56e _PyFunction_Vectorcall + 270 91 org.python.python 0x0000000105ba860c call_function + 444 92 org.python.python 0x0000000105ba5505 _PyEval_EvalFrameDefault + 25829 93 org.python.python 0x0000000105ba9454 _PyEval_EvalCodeWithName + 2804 94 org.python.python 0x0000000105ada56e _PyFunction_Vectorcall + 270 95 org.python.python 0x0000000105ad9dad PyVectorcall_Call + 109 96 org.python.python 0x0000000105c0beb3 pymain_run_module + 195 97 org.python.python 0x0000000105c0b585 Py_RunMain + 1413 98 org.python.python 0x0000000105c0bbdf pymain_main + 223 99 org.python.python 0x0000000105c0baeb Py_Main + 43 100 edu.ucsf.cgl.ChimeraX 0x0000000105ab1dc8 main + 120 101 libdyld.dylib 0x00007fff2043af3d start + 1 Thread 1: 0 libsystem_kernel.dylib 0x00007fff203ecd4e __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff2041fea1 _pthread_cond_wait + 1298 2 libopenblas.0.dylib 0x0000000106bd227b blas_thread_server + 507 3 libsystem_pthread.dylib 0x00007fff2041f954 _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2041b4a7 thread_start + 15 Thread 2:: ThreadPoolServiceThread 0 libsystem_kernel.dylib 0x00007fff203f31ea kevent64 + 10 1 QtWebEngineCore 0x000000011577ae6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330 2 QtWebEngineCore 0x000000011577acc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167 3 QtWebEngineCore 0x000000011570362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 4 QtWebEngineCore 0x00000001156c77cb base::RunLoop::Run() + 395 5 QtWebEngineCore 0x000000011570ea94 base::internal::ServiceThread::Run(base::RunLoop*) + 20 6 QtWebEngineCore 0x0000000115722a7d base::Thread::ThreadMain() + 413 7 QtWebEngineCore 0x000000011576be07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff2041f954 _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff2041b4a7 thread_start + 15 Thread 3:: ThreadPoolBackgroundWorker 0 libsystem_kernel.dylib 0x00007fff203ea32a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff203ea69c mach_msg + 60 2 QtWebEngineCore 0x0000000115770492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000115718778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x0000000115719150 base::internal::WorkerThread::RunWorker() + 1024 5 QtWebEngineCore 0x0000000115718c44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20 6 QtWebEngineCore 0x000000011576be07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff2041f954 _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2041b4a7 thread_start + 15 Thread 4:: Chrome_IOThread 0 libsystem_kernel.dylib 0x00007fff203f31ea kevent64 + 10 1 QtWebEngineCore 0x000000011577ae6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330 2 QtWebEngineCore 0x000000011577acc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167 3 QtWebEngineCore 0x000000011570362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 4 QtWebEngineCore 0x00000001156c77cb base::RunLoop::Run() + 395 5 QtWebEngineCore 0x0000000119647f06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102 6 QtWebEngineCore 0x0000000115722a7d base::Thread::ThreadMain() + 413 7 QtWebEngineCore 0x000000011576be07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff2041f954 _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff2041b4a7 thread_start + 15 Thread 5:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff203ea32a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff203ea69c mach_msg + 60 2 QtWebEngineCore 0x0000000115770492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x00000001157702cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x00000001156981db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x000000011570362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x00000001156c77cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x0000000115722a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x000000011576be07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff2041f954 _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff2041b4a7 thread_start + 15 Thread 6:: CompositorTileWorker1 0 libsystem_kernel.dylib 0x00007fff203ecd4e __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff2041fea1 _pthread_cond_wait + 1298 2 QtWebEngineCore 0x0000000115767e18 base::ConditionVariable::Wait() + 104 3 QtWebEngineCore 0x0000000116a1f5f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56 4 QtWebEngineCore 0x000000011576be07 base::(anonymous namespace)::ThreadFunc(void*) + 87 5 libsystem_pthread.dylib 0x00007fff2041f954 _pthread_start + 224 6 libsystem_pthread.dylib 0x00007fff2041b4a7 thread_start + 15 Thread 7:: Chrome_InProcGpuThread 0 libsystem_kernel.dylib 0x00007fff203ea32a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff203ea69c mach_msg + 60 2 QtWebEngineCore 0x0000000115770492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x000000011569820f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223 4 QtWebEngineCore 0x000000011570362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 5 QtWebEngineCore 0x00000001156c77cb base::RunLoop::Run() + 395 6 QtWebEngineCore 0x0000000115722a7d base::Thread::ThreadMain() + 413 7 QtWebEngineCore 0x000000011576be07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff2041f954 _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff2041b4a7 thread_start + 15 Thread 8:: Chrome_ChildIOThread 0 libsystem_kernel.dylib 0x00007fff203f31ea kevent64 + 10 1 QtWebEngineCore 0x000000011577ae6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330 2 QtWebEngineCore 0x000000011577acc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167 3 QtWebEngineCore 0x000000011570362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 4 QtWebEngineCore 0x00000001156c77cb base::RunLoop::Run() + 395 5 QtWebEngineCore 0x0000000115722a7d base::Thread::ThreadMain() + 413 6 QtWebEngineCore 0x000000011576be07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff2041f954 _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2041b4a7 thread_start + 15 Thread 9:: VizCompositorThread 0 libsystem_kernel.dylib 0x00007fff203ea32a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff203ea69c mach_msg + 60 2 QtWebEngineCore 0x0000000115770492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x00000001157702cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x00000001156981db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x000000011570362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x00000001156c77cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x0000000115722a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x000000011576be07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff2041f954 _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff2041b4a7 thread_start + 15 Thread 10:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff203ea32a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff203ea69c mach_msg + 60 2 QtWebEngineCore 0x0000000115770492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x00000001157702cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x00000001156981db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x000000011570362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x00000001156c77cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x0000000115722a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x000000011576be07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff2041f954 _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff2041b4a7 thread_start + 15 Thread 11:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff203ea32a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff203ea69c mach_msg + 60 2 QtWebEngineCore 0x0000000115770492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x00000001157702cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x00000001156981db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x000000011570362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x00000001156c77cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x0000000115722a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x000000011576be07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff2041f954 _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff2041b4a7 thread_start + 15 Thread 12:: ThreadPoolSingleThreadForegroundBlocking0 0 libsystem_kernel.dylib 0x00007fff203ea32a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff203ea69c mach_msg + 60 2 QtWebEngineCore 0x0000000115770492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x00000001157702cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000011571876a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42 5 QtWebEngineCore 0x0000000115719150 base::internal::WorkerThread::RunWorker() + 1024 6 QtWebEngineCore 0x0000000115718d34 base::internal::WorkerThread::RunDedicatedWorker() + 20 7 QtWebEngineCore 0x000000011576be07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff2041f954 _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff2041b4a7 thread_start + 15 Thread 13:: MemoryInfra 0 libsystem_kernel.dylib 0x00007fff203ea32a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff203ea69c mach_msg + 60 2 QtWebEngineCore 0x0000000115770492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x00000001157702cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x00000001156981db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x000000011570362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x00000001156c77cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x0000000115722a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x000000011576be07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff2041f954 _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff2041b4a7 thread_start + 15 Thread 14:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff203ea32a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff203ea69c mach_msg + 60 2 QtWebEngineCore 0x0000000115770492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x00000001157702cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x00000001156981db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x000000011570362b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x00000001156c77cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x0000000115722a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x000000011576be07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff2041f954 _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff2041b4a7 thread_start + 15 Thread 15:: com.apple.NSEventThread 0 libsystem_kernel.dylib 0x00007fff203ea32a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff203ea69c mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff20518c6f __CFRunLoopServiceMachPort + 316 3 com.apple.CoreFoundation 0x00007fff2051734f __CFRunLoopRun + 1328 4 com.apple.CoreFoundation 0x00007fff2051675c CFRunLoopRunSpecific + 563 5 com.apple.AppKit 0x00007fff22e98baa _NSEventThread + 124 6 libsystem_pthread.dylib 0x00007fff2041f954 _pthread_start + 224 7 libsystem_pthread.dylib 0x00007fff2041b4a7 thread_start + 15 Thread 16:: ThreadPoolSingleThreadSharedBackgroundBlocking1 0 libsystem_kernel.dylib 0x00007fff203ea32a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff203ea69c mach_msg + 60 2 QtWebEngineCore 0x0000000115770492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x00000001157702cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x000000011571876a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42 5 QtWebEngineCore 0x0000000115718e3d base::internal::WorkerThread::RunWorker() + 237 6 QtWebEngineCore 0x0000000115718c74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20 7 QtWebEngineCore 0x000000011576be07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff2041f954 _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff2041b4a7 thread_start + 15 Thread 17:: ThreadPoolForegroundWorker 0 libsystem_kernel.dylib 0x00007fff203ea32a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff203ea69c mach_msg + 60 2 QtWebEngineCore 0x0000000115770492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000115718778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x0000000115719150 base::internal::WorkerThread::RunWorker() + 1024 5 QtWebEngineCore 0x0000000115718cd4 base::internal::WorkerThread::RunPooledWorker() + 20 6 QtWebEngineCore 0x000000011576be07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff2041f954 _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2041b4a7 thread_start + 15 Thread 18: 0 libsystem_pthread.dylib 0x00007fff2041b484 start_wqthread + 0 Thread 19: 0 libsystem_pthread.dylib 0x00007fff2041b484 start_wqthread + 0 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x000000010dc01e00 rcx: 0x00007ff322955a58 rdx: 0x0000000000000000 rdi: 0x0000000000000103 rsi: 0x0000000000000006 rbp: 0x00007ff322955a80 rsp: 0x00007ff322955a58 r8: 0x00007ff322955f48 r9: 0x6adeaae0c4d36e9e r10: 0x000000010dc01e00 r11: 0x0000000000000246 r12: 0x0000000000000103 r13: 0x00007ff32785c518 r14: 0x0000000000000006 r15: 0x0000000000000016 rip: 0x00007fff203f0946 rfl: 0x0000000000000246 cr2: 0x0000000105cf07e0 Logical CPU: 0 Error Code: 0x02000148 Trap Number: 133 Thread 0 instruction stream not available. Thread 0 last branch register state not available. 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1) /System/Library/PrivateFrameworks/MallocStackLogging.framework/Versions/A/MallocStackLogging 0x7fff3d4bb000 - 0x7fff3d4cdfff libmis.dylib (274.100.13) /usr/lib/libmis.dylib 0x7fff3d4ce000 - 0x7fff3d4d1fff com.apple.gpusw.GPURawCounter (20.3 - 12.0) /System/Library/PrivateFrameworks/GPURawCounter.framework/Versions/A/GPURawCounter 0x7fff3d4ea000 - 0x7fff3d659fff com.apple.CoreHandwriting (161 - 1.2) /System/Library/PrivateFrameworks/CoreHandwriting.framework/Versions/A/CoreHandwriting 0x7fff3d65a000 - 0x7fff3d8b5fff com.apple.imageKit (3.0 - 1100) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/ImageKit.framework/Versions/A/ImageKit 0x7fff3d8b6000 - 0x7fff3d9ccfff com.apple.PencilKit (1.0 - 1) /System/Library/Frameworks/PencilKit.framework/Versions/A/PencilKit 0x7fff3d9cd000 - 0x7fff3d9defff com.apple.sidecar-ui (1.0 - 231) /System/Library/PrivateFrameworks/SidecarUI.framework/Versions/A/SidecarUI 0x7fff3e001000 - 0x7fff3e063fff com.apple.ImageCaptureCore (1711.4.2 - 1711.4.2) /System/Library/Frameworks/ImageCaptureCore.framework/Versions/A/ImageCaptureCore 0x7fff3e064000 - 0x7fff3e089fff com.apple.quartzfilters (1.10.0 - 98) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzFilters.framework/Versions/A/QuartzFilters 0x7fff3e269000 - 0x7fff3e2d5fff com.apple.Safari.Core (16611 - 16611.1.21.161.6) /System/Library/PrivateFrameworks/SafariCore.framework/Versions/A/SafariCore 0x7fff3e2d6000 - 0x7fff3e435fff com.apple.MediaPlayer (1.0 - 1.0) /System/Library/Frameworks/MediaPlayer.framework/Versions/A/MediaPlayer 0x7fff3e436000 - 0x7fff3e714fff com.apple.iTunesCloud (1.0 - 1) /System/Library/PrivateFrameworks/iTunesCloud.framework/Versions/A/iTunesCloud 0x7fff3e740000 - 0x7fff3e86cfff com.apple.AnnotationKit (1.0 - 383.6) /System/Library/PrivateFrameworks/AnnotationKit.framework/Versions/A/AnnotationKit 0x7fff3e86d000 - 0x7fff3ed0dfff com.apple.QuartzComposer (5.1 - 383) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzComposer.framework/Versions/A/QuartzComposer 0x7fff3ed0e000 - 0x7fff3edf6fff com.apple.PDFKit (1.0 - 950.32.1) /System/Library/Frameworks/PDFKit.framework/Versions/A/PDFKit 0x7fff3fb29000 - 0x7fff3fba6fff com.apple.TextInput (1.0 - 1.0) /System/Library/PrivateFrameworks/TextInput.framework/Versions/A/TextInput 0x7fff40d3d000 - 0x7fff40d40fff com.apple.quartzframework (1.5 - 25) /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz 0x7fff41165000 - 0x7fff41183fff libCGInterfaces.dylib (544.4) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib 0x7fff43691000 - 0x7fff436f0fff com.apple.DifferentialPrivacy (1.0 - 1) /System/Library/PrivateFrameworks/DifferentialPrivacy.framework/Versions/A/DifferentialPrivacy 0x7fff436f1000 - 0x7fff4370afff com.apple.SafariFoundation (16611 - 16611.1.21.161.6) /System/Library/PrivateFrameworks/SafariFoundation.framework/Versions/A/SafariFoundation 0x7fff4370b000 - 0x7fff43711fff com.apple.SafariPlatformSupport.framework (16611 - ???) /System/Library/PrivateFrameworks/SafariPlatformSupport.framework/Versions/A/SafariPlatformSupport 0x7fff43712000 - 0x7fff43985fff com.apple.RawCamera.bundle (9.10.0 - 1440) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera 0x7fff441ee000 - 0x7fff441f2fff com.apple.DAAPKit (1.0 - 1) /System/Library/PrivateFrameworks/DAAPKit.framework/Versions/A/DAAPKit 0x7fff45b6a000 - 0x7fff45b6dfff libpmenergy.dylib (227.100.2) /usr/lib/libpmenergy.dylib 0x7fff46272000 - 0x7fff4627dfff libGPUSupportMercury.dylib (18.5.8) /System/Library/PrivateFrameworks/GPUSupport.framework/Versions/A/Libraries/libGPUSupportMercury.dylib 0x7fff478a9000 - 0x7fff478e8fff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics 0x7fff48135000 - 0x7fff48150fff com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics 0x7fff514d8000 - 0x7fff51505fff com.apple.HelpData (2.3 - 201) /System/Library/PrivateFrameworks/HelpData.framework/Versions/A/HelpData 0x7fff51506000 - 0x7fff51520fff com.apple.shortcut (2.16 - 117) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut 0x7fff51521000 - 0x7fff515c0fff com.apple.Symbolication (12.5 - 64544.66.1) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication 0x7fff5178c000 - 0x7fff5178ffff libpmsample.dylib (227.100.2) /usr/lib/libpmsample.dylib 0x7fff53e36000 - 0x7fff53e6cfff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit 0x7fff55466000 - 0x7fff55469fff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback 0x7fff5db78000 - 0x7fff5e007fff com.apple.driver.AppleIntelKBLGraphicsMTLDriver (16.2.16 - 16.0.2) /System/Library/Extensions/AppleIntelKBLGraphicsMTLDriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsMTLDriver 0x7fff5ed98000 - 0x7fff5fd7ffff com.apple.driver.AppleIntelKBLGraphicsGLDriver (16.2.16 - 16.0.2) /System/Library/Extensions/AppleIntelKBLGraphicsGLDriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsGLDriver 0x7fff6952f000 - 0x7fff69533fff libmetal_timestamp.dylib (31001.184.2) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib 0x7fff6b97a000 - 0x7fff6b980fff libCoreFSCache.dylib (200.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib 0x7fff6b981000 - 0x7fff6b985fff libCoreVMClient.dylib (200.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib 0x7fff6b986000 - 0x7fff6b995fff com.apple.opengl (18.5.8 - 18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL 0x7fff6b996000 - 0x7fff6b998fff libCVMSPluginSupport.dylib (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib 0x7fff6b999000 - 0x7fff6b9a1fff libGFXShared.dylib (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib 0x7fff6b9a2000 - 0x7fff6b9d5fff libGLImage.dylib (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib 0x7fff6b9d6000 - 0x7fff6ba12fff libGLU.dylib (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib 0x7fff6ba13000 - 0x7fff6bba6fff libGLProgrammability.dylib (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib 0x7fff6bba7000 - 0x7fff6bbb1fff libGL.dylib (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib 0x7fff6bbb2000 - 0x7fff6bd2ffff GLEngine (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine 0x7fff6bd30000 - 0x7fff6bd58fff GLRendererFloat (18.5.8) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat 0x7fff6cff1000 - 0x7fff6d049fff com.apple.opencl (4.5 - 4.5) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL 0x7fff6e0ef000 - 0x7fff6e0f6fff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL 0x7fff6e0f7000 - 0x7fff6e1defff com.apple.audio.AVFAudio (1.0 - 477.84) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio 0x7fff6f75c000 - 0x7fff6f76efff com.apple.CMImaging (1.0 - 81.37) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging 0x7fff739f6000 - 0x7fff73a01fff com.apple.SymptomAnalytics (1.0 - 1431.100.22) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics 0x7fff73c17000 - 0x7fff73c2ffff com.apple.SymptomPresentationFeed (1.0 - 1431.100.22) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed 0x7fff7779b000 - 0x7fff777a2fff libRosetta.dylib (203.42) /usr/lib/libRosetta.dylib External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 0 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=1.1G resident=0K(0%) swapped_out_or_unallocated=1.1G(100%) Writable regions: Total=8.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=8.2G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 256K 2 Activity Tracing 256K 1 CG backing stores 3240K 6 CG image 308K 38 CoreAnimation 288K 21 CoreGraphics 12K 2 CoreUI image data 3940K 31 Foundation 32K 2 Kernel Alloc Once 8K 1 MALLOC 7.1G 4344 MALLOC guard page 32K 8 MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated) MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated) Mach message 24K 3 OpenGL GLSL 384K 5 STACK GUARD 76K 19 Stack 130.1M 20 Stack Guard 56.0M 1 VM_ALLOCATE 600.6M 1236 __DATA 30.8M 604 __DATA_CONST 25.2M 280 __DATA_DIRTY 1289K 184 __FONT_DATA 4K 1 __GLSLBUILTINS 5176K 1 __LINKEDIT 590.9M 143 __OBJC_RO 70.1M 1 __OBJC_RW 2480K 2 __TEXT 585.8M 582 __UNICODE 588K 1 mapped file 698.7M 90 shared memory 2952K 22 =========== ======= ======= TOTAL 10.2G 7653 TOTAL, minus reserved VM space 9.8G 7653 Log: UCSF ChimeraX version: 1.2.5 (2021-05-24) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 INTEL-16.2.16 OpenGL renderer: Intel(R) UHD Graphics 617 OpenGL vendor: Intel Inc.Hardware: Hardware Overview: Model Name: MacBook Air Model Identifier: MacBookAir8,1 Processor Name: Dual-Core Intel Core i5 Processor Speed: 1.6 GHz Number of Processors: 1 Total Number of Cores: 2 L2 Cache (per Core): 256 KB L3 Cache: 4 MB Hyper-Threading Technology: Enabled Memory: 8 GB System Firmware Version: 1554.100.64.0.0 (iBridge: 18.16.14556.0.0,0) Software: System Software Overview: System Version: macOS 11.3.1 (20E241) Kernel Version: Darwin 20.4.0 Time since boot: 88 days 23:04 Graphics/Displays: Intel UHD Graphics 617: Chipset Model: Intel UHD Graphics 617 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x87c0 Revision ID: 0x0002 Metal Family: Supported, Metal GPUFamily macOS 2 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Framebuffer Depth: 24-Bit Color (ARGB8888) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Locale: (None, 'UTF-8') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.2 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2020.12.5 cftime: 1.5.0 chardet: 3.0.4 ChimeraX-AddCharge: 1.0.1 ChimeraX-AddH: 2.1.6 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.13.2 ChimeraX-AtomicLibrary: 3.1.3 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 1.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.5.2 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.1 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.1 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.2.1 ChimeraX-CommandLine: 1.1.4 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.2.5 ChimeraX-CoreFormats: 1.0 ChimeraX-coulombic: 1.1.1 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.1 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.3 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.0 ChimeraX-Hbonds: 2.1 ChimeraX-Help: 1.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.0 ChimeraX-ImageFormats: 1.1 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-Label: 1.0 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.0.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.0 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 1.2.1 ChimeraX-MDcrds: 2.2 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.3 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.0.1 ChimeraX-ModelPanel: 1.0.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.1 ChimeraX-OpenCommand: 1.5 ChimeraX-PDB: 2.4.1 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.1 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.0.1 ChimeraX-ReadPbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.4 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SeqView: 2.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.0 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.0.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.3.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.0.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.7.6 ChimeraX-uniprot: 2.1 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.3 comtypes: 1.1.7 cxservices: 1.0 cycler: 0.10.0 Cython: 0.29.21 decorator: 5.0.9 distlib: 0.3.1 docutils: 0.16 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 2.10.0 html2text: 2020.1.16 idna: 2.10 ihm: 0.17 imagecodecs: 2020.5.30 imagesize: 1.2.0 ipykernel: 5.3.4 ipython: 7.18.1 ipython-genutils: 0.2.0 jedi: 0.17.2 Jinja2: 2.11.2 jupyter-client: 6.1.7 jupyter-core: 4.7.1 kiwisolver: 1.3.1 line-profiler: 2.1.2 lxml: 4.6.2 lz4: 3.1.0 MarkupSafe: 2.0.1 matplotlib: 3.3.2 matplotlib-inline: 0.1.2 msgpack: 1.0.0 netCDF4: 1.5.4 networkx: 2.5 numexpr: 2.7.3 numpy: 1.19.2 numpydoc: 1.1.0 openvr: 1.14.1501 packaging: 20.9 ParmEd: 3.2.0 parso: 0.7.1 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 7.2.0 pip: 21.0.1 pkginfo: 1.5.0.1 prompt-toolkit: 3.0.18 psutil: 5.7.2 ptyprocess: 0.7.0 pycollada: 0.7.1 pydicom: 2.0.0 Pygments: 2.7.1 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.1 pytz: 2021.1 pyzmq: 22.0.3 qtconsole: 4.7.7 QtPy: 1.9.0 RandomWords: 0.3.0 requests: 2.24.0 scipy: 1.5.2 setuptools: 50.3.2 sfftk-rw: 0.6.7.dev1 six: 1.15.0 snowballstemmer: 2.1.0 sortedcontainers: 2.2.2 Sphinx: 3.2.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2020.9.3 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.0.5 urllib3: 1.25.11 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.36.0 wheel-filename: 1.3.0 }}} " defect closed normal Graphics nonchimerax all ChimeraX