id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 5126 'view' session data is None ewatson@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-10.15.7-x86_64-i386-64bit ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC) Description I can't restore a recent session, though the Log messages indicate that files are opened normally. I tried in 2.1.4 and the new 2.1.5 Log: UCSF ChimeraX version: 1.2.5 (2021-05-24) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/ewatson/Dropbox (Scripps > Research)/Cereblon/FIGURES/sessionfig3c.cxs"" Opened 2442_2458_2460_hingedclosed.mrc as #1, grid size 224,224,224, pixel 1.15, shown at step 1, values float32 Opened 100postprocess_masked.mrc as #4, grid size 224,224,224, pixel 1.15, shown at step 1, values float32 Opened 100postprocess_masked.mrc gaussian as #5, grid size 224,224,224, pixel 1.15, shown at step 1, values float32 Opened 100postprocess_masked.mrc gaussian as #7, grid size 224,224,224, pixel 1.15, shown at step 1, values float32 Opened 100postprocess_masked.mrc gaussian as #8, grid size 224,224,224, pixel 1.15, shown at step 1, values float32 Opened 19dec13_32run_class001.mrc as #9, grid size 224,224,224, pixel 0.91, shown at step 1, values float32 Opened cryosparc_P17_J2499_class_01_00162_volume.mrc as #10, grid size 128,128,128, pixel 1.8, shown at step 1, values float32 Opened cryosparc_P17_J2499_class_01_00162_volume.mrc gaussian as #12, grid size 128,128,128, pixel 1.8, shown at step 1, values float32 Opened cryosparc_P17_J2499_class_01_00162_volume.mrc gaussian as #11, grid size 128,128,128, pixel 1.8, shown at step 1, values float32 Opened 22run_class001.mrc as #13, grid size 224,224,224, pixel 0.91, shown at step 1, values float32 Opened 117postprocess_masked.mrc as #14, grid size 224,224,224, pixel 0.91, shown at step 1, values float32 Opened 117postprocess_masked.mrc gaussian as #15, grid size 224,224,224, pixel 0.91, shown at step 1, values float32 Opened 121postprocess_masked.mrc as #18, grid size 224,224,224, pixel 0.91, shown at step 1, values float32 Opened 19dec14c_68postprocess_masked.mrc as #19, grid size 224,224,224, pixel 0.91, shown at step 1, values float32 Opened cryosparc_P17_J2212_006_volume_map_sharp.mrc as #20, grid size 200,200,200, pixel 1.15, shown at step 1, values float32 Opened cryosparc_P17_J2635_map_sharp.mrc as #21.1, grid size 200,200,200, pixel 1.15, shown at step 1, values float32 Opened cryosparc_P17_J2636_map_sharp.mrc as #21.2, grid size 200,200,200, pixel 1.15, shown at level 0.22, step 1, values float32 Opened cryosparc_P17_J2634_map_sharp.mrc as #22, grid size 200,200,200, pixel 1.15, shown at level 0.105, step 1, values float32 Opened postprocess147a01_masked.mrc as #29, grid size 200,200,200, pixel 0.91, shown at step 1, values float32 Opened 040run_class001.mrc as #30.1, grid size 200,200,200, pixel 0.91, shown at level 0.00437, step 1, values float32 Opened postprocess040a002_masked.mrc as #30.2, grid size 200,200,200, pixel 0.91, shown at level 0.0111, step 1, values float32 Opened 19aug16c_closed_postprocess113_masked.mrc as #31, grid size 224,224,224, pixel 0.91, shown at step 1, values float32 Opened postprocess147a01_masked.mrc gaussian as #35, grid size 200,200,200, pixel 0.91, shown at step 1, values float32 Opened postprocess040a002_masked.mrc gaussian as #36, grid size 200,200,200, pixel 0.91, shown at level 0.00434, step 1, values float32 Opened 19aug16c_closed_postprocess113_masked.mrc gaussian as #37, grid size 224,224,224, pixel 0.91, shown at level 0.00349, step 1, values float32 Opened cryosparc_P17_J2635_map_sharp.mrc as #24, grid size 200,200,200, pixel 1.15, shown at step 1, values float32 Opened cryosparc_P17_J2107_map_sharp.mrc as #27, grid size 224,224,224, pixel 1.15, shown at step 1, values float32 Opened cryosparc_P17_J2147_006_volume_map_sharp.mrc as #28.1, grid size 224,224,224, pixel 1.15, shown at level 0.129, step 1, values float32 Opened cryosparc_P17_J2148_005_volume_map_sharp.mrc as #28.2, grid size 224,224,224, pixel 1.15, shown at level 0.207, step 1, values float32 Opened cryosparc_P17_J2149_006_volume_map_sharp.mrc as #28.3, grid size 224,224,224, pixel 1.15, shown at level 0.206, step 1, values float32 Opened cryosparc_P17_J2147_006_volume_map_sharp.mrc gaussian as #33, grid size 224,224,224, pixel 1.15, shown at step 1, values float32 Opened cryosparc_P17_J2148_005_volume_map_sharp.mrc gaussian as #34, grid size 224,224,224, pixel 1.15, shown at level 0.0853, step 1, values float32 Opened cryosparc_P17_J2149_006_volume_map_sharp.mrc gaussian as #38, grid size 224,224,224, pixel 1.15, shown at level 0.122, step 1, values float32 Opened cryosparc_P17_J2149_006_volume_map_sharp.mrc gaussian as #39, grid size 224,224,224, pixel 1.15, shown at level 0.161, step 1, values float32 Opened cryosparc_P17_J2148_005_volume_map_sharp.mrc gaussian as #40, grid size 224,224,224, pixel 1.15, shown at level 0.18, step 1, values float32 Opened cryosparc_P17_J2147_006_volume_map_sharp.mrc gaussian as #41, grid size 224,224,224, pixel 1.15, shown at step 1, values float32 Opened try4_real_space_refined_008-coot-1_real_space_refined_010.pdb map 8 as #42, grid size 48,67,53, pixel 2.67, shown at step 1, values float32 Opened 6umlOPEN-linear_1.pdb map 8 as #43, grid size 47,65,56, pixel 2.67, shown at step 1, values float32 Opened map 8 as #50, grid size 52,66,62, pixel 2.67, shown at step 1, values float32 Opened map 8 as #49, grid size 51,65,59, pixel 2.67, shown at step 1, values float32 Opened map 8 as #51, grid size 47,67,56, pixel 2.67, shown at step 1, values float32 Opened TBDsub2.pdb map 4 as #47, grid size 22,26,23, pixel 1.33, shown at step 1, values float32 Opened map 8 as #52, grid size 48,66,56, pixel 2.67, shown at step 1, values float32 Opened Morph - try4_real_space_refined_008-coot-1_real_space_refined_010.pdb map 8 as #54, grid size 32,33,30, pixel 2.67, shown at step 1, values float32 Opened Morph - try4_real_space_refined_008-coot-1_real_space_refined_010.pdb map 8 as #56, grid size 36,39,34, pixel 2.67, shown at step 1, values float32 Opened Morph - try4_real_space_refined_008-coot-1_real_space_refined_010.pdb map 8 as #55, grid size 31,35,31, pixel 2.67, shown at step 1, values float32 Opened tclcactvs0000GGsXQ.pdb map 4 as #58, grid size 35,24,22, pixel 1.33, shown at level 0.0621, step 1, values float32 Opened map 8 as #59, grid size 49,73,57, pixel 2.67, shown at step 1, values float32 Opened map 8 as #60, grid size 49,72,56, pixel 2.67, shown at step 1, values float32 Opened map 8 as #61, grid size 48,71,56, pixel 2.67, shown at step 1, values float32 Opened TBDsub2.pdb map 8 as #62, grid size 25,22,28, pixel 2.67, shown at level 0.00591, step 1, values float32 Opened 6umlOPEN-linear_1.pdb map 5 as #3, grid size 25,32,29, pixel 1.67, shown at level 0.0101, step 1, values float32 Opened 6bnb map 5 as #63, grid size 29,29,36, pixel 1.67, shown at level 0.0477, step 1, values float32 Unable to restore session, resetting. Traceback (most recent call last): File ""/private/var/folders/qm/n97hnpnn5533_m7dn6_v5xx00000gn/T/AppTranslocation/FEE5F80B-661B-4ADF-86D2-CDC9AF569358/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/core/session.py"", line 713, in restore obj = sm.restore_snapshot(self, data) File ""/private/var/folders/qm/n97hnpnn5533_m7dn6_v5xx00000gn/T/AppTranslocation/FEE5F80B-661B-4ADF-86D2-CDC9AF569358/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/std_commands/view.py"", line 263, in restore_snapshot for k,v in data['view attrs'].items(): TypeError: 'NoneType' object is not subscriptable Traceback (most recent call last): File ""/private/var/folders/qm/n97hnpnn5533_m7dn6_v5xx00000gn/T/AppTranslocation/FEE5F80B-661B-4ADF-86D2-CDC9AF569358/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/core/session.py"", line 713, in restore obj = sm.restore_snapshot(self, data) File ""/private/var/folders/qm/n97hnpnn5533_m7dn6_v5xx00000gn/T/AppTranslocation/FEE5F80B-661B-4ADF-86D2-CDC9AF569358/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/std_commands/view.py"", line 263, in restore_snapshot for k,v in data['view attrs'].items(): TypeError: 'NoneType' object is not subscriptable During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/private/var/folders/qm/n97hnpnn5533_m7dn6_v5xx00000gn/T/AppTranslocation/FEE5F80B-661B-4ADF-86D2-CDC9AF569358/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/ui/widgets/htmlview.py"", line 324, in interceptRequest self._callback(info) File ""/private/var/folders/qm/n97hnpnn5533_m7dn6_v5xx00000gn/T/AppTranslocation/FEE5F80B-661B-4ADF-86D2-CDC9AF569358/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/ui/widgets/htmlview.py"", line 85, in _intercept return interceptor(request_info, *args) File ""/private/var/folders/qm/n97hnpnn5533_m7dn6_v5xx00000gn/T/AppTranslocation/FEE5F80B-661B-4ADF-86D2-CDC9AF569358/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/ui/widgets/htmlview.py"", line 357, in intercept chimerax_intercept(*args, view=view, session=session) File ""/private/var/folders/qm/n97hnpnn5533_m7dn6_v5xx00000gn/T/AppTranslocation/FEE5F80B-661B-4ADF-86D2-CDC9AF569358/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/ui/widgets/htmlview.py"", line 453, in chimerax_intercept session.ui.thread_safe(defer, session, qurl.url(no_formatting), from_dir) File ""/private/var/folders/qm/n97hnpnn5533_m7dn6_v5xx00000gn/T/AppTranslocation/FEE5F80B-661B-4ADF-86D2-CDC9AF569358/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/ui/gui.py"", line 366, in thread_safe func(*args, **kw) File ""/private/var/folders/qm/n97hnpnn5533_m7dn6_v5xx00000gn/T/AppTranslocation/FEE5F80B-661B-4ADF-86D2-CDC9AF569358/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/ui/widgets/htmlview.py"", line 444, in defer cxcmd(session, topic) File ""/private/var/folders/qm/n97hnpnn5533_m7dn6_v5xx00000gn/T/AppTranslocation/FEE5F80B-661B-4ADF-86D2-CDC9AF569358/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/ui/widgets/htmlview.py"", line 462, in cxcmd run(session, cmd) File ""/private/var/folders/qm/n97hnpnn5533_m7dn6_v5xx00000gn/T/AppTranslocation/FEE5F80B-661B-4ADF-86D2-CDC9AF569358/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/core/commands/run.py"", line 36, in run results = command.run(text, log=log, return_json=return_json) File ""/private/var/folders/qm/n97hnpnn5533_m7dn6_v5xx00000gn/T/AppTranslocation/FEE5F80B-661B-4ADF-86D2-CDC9AF569358/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/core/commands/cli.py"", line 2852, in run result = ci.function(session, **kw_args) File ""/private/var/folders/qm/n97hnpnn5533_m7dn6_v5xx00000gn/T/AppTranslocation/FEE5F80B-661B-4ADF-86D2-CDC9AF569358/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/open_command/cmd.py"", line 118, in cmd_open models = Command(session, registry=registry).run(provider_cmd_text, log=log)[0] File ""/private/var/folders/qm/n97hnpnn5533_m7dn6_v5xx00000gn/T/AppTranslocation/FEE5F80B-661B-4ADF-86D2-CDC9AF569358/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/core/commands/cli.py"", line 2852, in run result = ci.function(session, **kw_args) File ""/private/var/folders/qm/n97hnpnn5533_m7dn6_v5xx00000gn/T/AppTranslocation/FEE5F80B-661B-4ADF-86D2-CDC9AF569358/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/open_command/cmd.py"", line 179, in provider_open models, status = collated_open(session, None, [data], data_format, _add_models, File ""/private/var/folders/qm/n97hnpnn5533_m7dn6_v5xx00000gn/T/AppTranslocation/FEE5F80B-661B-4ADF-86D2-CDC9AF569358/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/open_command/cmd.py"", line 422, in collated_open return func(*func_args, **func_kw) File ""/private/var/folders/qm/n97hnpnn5533_m7dn6_v5xx00000gn/T/AppTranslocation/FEE5F80B-661B-4ADF-86D2-CDC9AF569358/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/core_formats/__init__.py"", line 26, in open return cxs_open(session, data, **kw) File ""/private/var/folders/qm/n97hnpnn5533_m7dn6_v5xx00000gn/T/AppTranslocation/FEE5F80B-661B-4ADF-86D2-CDC9AF569358/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/core/session.py"", line 982, in open session.restore(stream, path=path, resize_window=resize_window) File ""/private/var/folders/qm/n97hnpnn5533_m7dn6_v5xx00000gn/T/AppTranslocation/FEE5F80B-661B-4ADF-86D2-CDC9AF569358/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/core/session.py"", line 721, in restore self.reset() File ""/private/var/folders/qm/n97hnpnn5533_m7dn6_v5xx00000gn/T/AppTranslocation/FEE5F80B-661B-4ADF-86D2-CDC9AF569358/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/core/session.py"", line 531, in reset container.clear() AttributeError: 'Fake' object has no attribute 'clear' AttributeError: 'Fake' object has no attribute 'clear' File ""/private/var/folders/qm/n97hnpnn5533_m7dn6_v5xx00000gn/T/AppTranslocation/FEE5F80B-661B-4ADF-86D2-CDC9AF569358/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/core/session.py"", line 531, in reset container.clear() See log for complete Python traceback. OpenGL version: 4.1 INTEL-14.7.8 OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 655 OpenGL vendor: Intel Inc.Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro15,2 Processor Name: Quad-Core Intel Core i5 Processor Speed: 2.3 GHz Number of Processors: 1 Total Number of Cores: 4 L2 Cache (per Core): 256 KB L3 Cache: 6 MB Hyper-Threading Technology: Enabled Memory: 8 GB Boot ROM Version: 1554.80.3.0.0 (iBridge: 18.16.14347.0.0,0) Software: System Software Overview: System Version: macOS 10.15.7 (19H2) Kernel Version: Darwin 19.6.0 Time since boot: 8 minutes Graphics/Displays: Intel Iris Plus Graphics 655: Chipset Model: Intel Iris Plus Graphics 655 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x3ea5 Revision ID: 0x0001 Metal: Supported, feature set macOS GPUFamily2 v1 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Framebuffer Depth: 24-Bit Color (ARGB8888) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal Locale: (None, 'UTF-8') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.2 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2020.12.5 cftime: 1.5.0 chardet: 3.0.4 ChimeraX-AddCharge: 1.0.1 ChimeraX-AddH: 2.1.6 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.13.2 ChimeraX-AtomicLibrary: 3.1.3 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 1.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.5.2 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.1 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.1 ChimeraX-Clipper: 0.16.1 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.2.1 ChimeraX-CommandLine: 1.1.4 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.2.5 ChimeraX-CoreFormats: 1.0 ChimeraX-coulombic: 1.1.1 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.1 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.3 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.0 ChimeraX-Hbonds: 2.1 ChimeraX-Help: 1.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.0 ChimeraX-ImageFormats: 1.1 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ISOLDE: 1.2.1 ChimeraX-Label: 1.0 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.0.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.0 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 1.2.1 ChimeraX-MDcrds: 2.2 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.3 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.0.1 ChimeraX-ModelPanel: 1.0.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.1 ChimeraX-OpenCommand: 1.5 ChimeraX-PDB: 2.4.1 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.1 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.0.1 ChimeraX-ReadPbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.4 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SeqView: 2.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.0 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.0.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.3.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.0.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.7.6 ChimeraX-uniprot: 2.1 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.3 comtypes: 1.1.7 cxservices: 1.0 cycler: 0.10.0 Cython: 0.29.21 decorator: 5.0.9 distlib: 0.3.1 docutils: 0.16 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 2.10.0 html2text: 2020.1.16 idna: 2.10 ihm: 0.17 imagecodecs: 2020.5.30 imagesize: 1.2.0 ipykernel: 5.3.4 ipython: 7.18.1 ipython-genutils: 0.2.0 jedi: 0.17.2 Jinja2: 2.11.2 jupyter-client: 6.1.7 jupyter-core: 4.7.1 kiwisolver: 1.3.1 line-profiler: 2.1.2 lxml: 4.6.2 lz4: 3.1.0 MarkupSafe: 2.0.1 matplotlib: 3.3.2 matplotlib-inline: 0.1.2 msgpack: 1.0.0 netCDF4: 1.5.4 networkx: 2.5 numexpr: 2.7.3 numpy: 1.19.2 numpydoc: 1.1.0 openvr: 1.14.1501 packaging: 20.9 ParmEd: 3.2.0 parso: 0.7.1 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 7.2.0 pip: 21.0.1 pkginfo: 1.5.0.1 prompt-toolkit: 3.0.18 psutil: 5.7.2 ptyprocess: 0.7.0 pycollada: 0.7.1 pydicom: 2.0.0 Pygments: 2.7.1 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.1 pytz: 2021.1 pyzmq: 22.0.3 qtconsole: 4.7.7 QtPy: 1.9.0 RandomWords: 0.3.0 requests: 2.24.0 scipy: 1.5.2 setuptools: 50.3.2 sfftk-rw: 0.6.7.dev1 six: 1.15.0 snowballstemmer: 2.1.0 sortedcontainers: 2.2.2 Sphinx: 3.2.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2020.9.3 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.0.5 urllib3: 1.25.11 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.36.0 wheel-filename: 1.3.0 }}} " defect closed normal Sessions limitation Greg Couch all ChimeraX