id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 4835 Crash in mouse modes cursor handling chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Bus error Current thread 0x0000000204b62e00 (most recent call first): File ""/private/var/folders/kq/bdq6g0dn0vd_w6vzz_66fl8r0000gn/T/AppTranslocation/0B1367C0-0202-40E6-8AB5-BFEDDBA47F6D/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/mouse_modes/mousemodes.py"", line 514 in _cursor_position File ""/private/var/folders/kq/bdq6g0dn0vd_w6vzz_66fl8r0000gn/T/AppTranslocation/0B1367C0-0202-40E6-8AB5-BFEDDBA47F6D/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/mouse_modes/mousemodes.py"", line 472 in mouse_pause_tracking File ""/private/var/folders/kq/bdq6g0dn0vd_w6vzz_66fl8r0000gn/T/AppTranslocation/0B1367C0-0202-40E6-8AB5-BFEDDBA47F6D/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/updateloop.py"", line 139 in _redraw_timer_callback File ""/private/var/folders/kq/bdq6g0dn0vd_w6vzz_66fl8r0000gn/T/AppTranslocation/0B1367C0-0202-40E6-8AB5-BFEDDBA47F6D/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/ui/gui.py"", line 293 in event_loop File ""/private/var/folders/kq/bdq6g0dn0vd_w6vzz_66fl8r0000gn/T/AppTranslocation/0B1367C0-0202-40E6-8AB5-BFEDDBA47F6D/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py"", line 866 in init File ""/private/var/folders/kq/bdq6g0dn0vd_w6vzz_66fl8r0000gn/T/AppTranslocation/0B1367C0-0202-40E6-8AB5-BFEDDBA47F6D/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py"", line 1015 in File ""/private/var/folders/kq/bdq6g0dn0vd_w6vzz_66fl8r0000gn/T/AppTranslocation/0B1367C0-0202-40E6-8AB5-BFEDDBA47F6D/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py"", line 87 in _run_code File ""/private/var/folders/kq/bdq6g0dn0vd_w6vzz_66fl8r0000gn/T/AppTranslocation/0B1367C0-0202-40E6-8AB5-BFEDDBA47F6D/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py"", line 194 in _run_module_as_main Process: ChimeraX [22502] Path: /private/var/folders/*/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX Identifier: edu.ucsf.cgl.ChimeraX Version: 1.2.5 (1.2.5.0) Code Type: X86-64 (Translated) Parent Process: ??? [1] Responsible: ChimeraX [22502] User ID: 501 Date/Time: 2021-06-29 14:46:49.014 +0900 OS Version: macOS 11.4 (20F71) Report Version: 12 Anonymous UUID: 2C3E8800-2E78-DB12-0647-5A6DBF860B44 Sleep/Wake UUID: AF78BCA6-7A0B-45D6-B54B-59F82A32992C Time Awake Since Boot: 42000 seconds Time Since Wake: 410 seconds System Integrity Protection: enabled Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread Exception Type: EXC_BAD_ACCESS (SIGBUS) Exception Codes: KERN_MEMORY_ERROR at 0x000000014b430020 Exception Note: EXC_CORPSE_NOTIFY VM Regions Near 0x14b430020: shared memory 14b266000-14b2e6000 [ 512K] r--/r-- SM=SHM --> mapped file 14b2e6000-14b455000 [ 1468K] r-x/rwx SM=COW Object_id=5474daeb mapped file 14b455000-14b46d000 [ 96K] rw-/rwx SM=COW Object_id=587ae0eb Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2031392e __pthread_kill + 10 2 libsystem_c.dylib 0x00007fff20226be5 raise + 26 3 libsystem_platform.dylib 0x00007fff20387d7d _sigtramp + 29 4 select.cpython-38-darwin.so 000000000000000000 0 + 0 5 ??? 0x00006000005dc390 ??? Thread 1:: com.apple.rosetta.exceptionserver 0 runtime 0x00007ffdffd1e858 0x7ffdffd1d000 + 6232 1 runtime 0x00007ffdffd28d50 0x7ffdffd1d000 + 48464 2 runtime 0x00007ffdffd29a20 0x7ffdffd1d000 + 51744 Thread 2: 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10 2 ??? 0x000000010ebfe27b ??? 3 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 3: 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10 2 ??? 0x000000010ebfe27b ??? 3 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 4: 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10 2 ??? 0x000000010ebfe27b ??? 3 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 5: 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10 2 ??? 0x000000010ebfe27b ??? 3 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 6: 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10 2 ??? 0x000000010ebfe27b ??? 3 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 7: 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10 2 ??? 0x000000010ebfe27b ??? 3 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 8: 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10 2 ??? 0x000000010ebfe27b ??? 3 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 9: 0 runtime 0x00007ffdffd7799c 0x7ffdffd1d000 + 371100 Thread 10: 0 runtime 0x00007ffdffd7799c 0x7ffdffd1d000 + 371100 Thread 11:: ThreadPoolServiceThread 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff203161d2 kevent64 + 10 2 ??? 0x000000012e952cc7 ??? 3 ??? 0x000000012e8db62b ??? 4 ??? 0x000000012e89f7cb ??? 5 ??? 0x000000012e8e6a94 ??? 6 ??? 0x000000012e8faa7d ??? 7 ??? 0x000000012e943e07 ??? 8 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 12:: ThreadPoolForegroundWorker 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 ??? 0x000000012e948492 ??? 3 ??? 0x000000012e8f0778 ??? 4 ??? 0x000000012e8f1150 ??? 5 ??? 0x000000012e8f0cd4 ??? 6 ??? 0x000000012e943e07 ??? 7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 13:: ThreadPoolBackgroundWorker 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 ??? 0x000000012e948492 ??? 3 ??? 0x000000012e8f0778 ??? 4 ??? 0x000000012e8f0e3d ??? 5 ??? 0x000000012e8f0c44 ??? 6 ??? 0x000000012e943e07 ??? 7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 14:: Chrome_IOThread 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff203161d2 kevent64 + 10 2 ??? 0x000000012e952cc7 ??? 3 ??? 0x000000012e8db62b ??? 4 ??? 0x000000012e89f7cb ??? 5 ??? 0x000000013281ff06 ??? 6 ??? 0x000000012e8faa7d ??? 7 ??? 0x000000012e943e07 ??? 8 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 15:: NetworkConfigWatcher 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 ??? 0x000000012e948492 ??? 3 ??? 0x000000012e9482cf ??? 4 ??? 0x000000012e8701db ??? 5 ??? 0x000000012e8db62b ??? 6 ??? 0x000000012e89f7cb ??? 7 ??? 0x000000012e8faa7d ??? 8 ??? 0x000000012e943e07 ??? 9 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 16:: ThreadPoolForegroundWorker 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 ??? 0x000000012e948492 ??? 3 ??? 0x000000012e8f0778 ??? 4 ??? 0x000000012e8f1150 ??? 5 ??? 0x000000012e8f0cd4 ??? 6 ??? 0x000000012e943e07 ??? 7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 17:: ThreadPoolForegroundWorker 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 ??? 0x000000012e948492 ??? 3 ??? 0x000000012e8f0778 ??? 4 ??? 0x000000012e8f1150 ??? 5 ??? 0x000000012e8f0cd4 ??? 6 ??? 0x000000012e943e07 ??? 7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 18:: ThreadPoolForegroundWorker 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 ??? 0x000000012e948492 ??? 3 ??? 0x000000012e8f0778 ??? 4 ??? 0x000000012e8f0e3d ??? 5 ??? 0x000000012e8f0cd4 ??? 6 ??? 0x000000012e943e07 ??? 7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 19:: CompositorTileWorker1 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10 2 ??? 0x000000012e93fe18 ??? 3 ??? 0x000000012fbf75f8 ??? 4 ??? 0x000000012e943e07 ??? 5 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 6 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 20:: Chrome_InProcGpuThread 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 ??? 0x000000012e948492 ??? 3 ??? 0x000000012e87020f ??? 4 ??? 0x000000012e8db62b ??? 5 ??? 0x000000012e89f7cb ??? 6 ??? 0x000000012e8faa7d ??? 7 ??? 0x000000012e943e07 ??? 8 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 21:: Chrome_ChildIOThread 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff203161d2 kevent64 + 10 2 ??? 0x000000012e952cc7 ??? 3 ??? 0x000000012e8db62b ??? 4 ??? 0x000000012e89f7cb ??? 5 ??? 0x000000012e8faa7d ??? 6 ??? 0x000000012e943e07 ??? 7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 22:: VizCompositorThread 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 ??? 0x000000012e948492 ??? 3 ??? 0x000000012e9482cf ??? 4 ??? 0x000000012e8701db ??? 5 ??? 0x000000012e8db62b ??? 6 ??? 0x000000012e89f7cb ??? 7 ??? 0x000000012e8faa7d ??? 8 ??? 0x000000012e943e07 ??? 9 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 23: 0 runtime 0x00007ffdffd7799c 0x7ffdffd1d000 + 371100 Thread 24:: NetworkConfigWatcher 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 ??? 0x000000012e948492 ??? 3 ??? 0x000000012e9482cf ??? 4 ??? 0x000000012e8701db ??? 5 ??? 0x000000012e8db62b ??? 6 ??? 0x000000012e89f7cb ??? 7 ??? 0x000000012e8faa7d ??? 8 ??? 0x000000012e943e07 ??? 9 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 25:: NetworkConfigWatcher 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 ??? 0x000000012e948492 ??? 3 ??? 0x000000012e9482cf ??? 4 ??? 0x000000012e8701db ??? 5 ??? 0x000000012e8db62b ??? 6 ??? 0x000000012e89f7cb ??? 7 ??? 0x000000012e8faa7d ??? 8 ??? 0x000000012e943e07 ??? 9 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 26:: ThreadPoolSingleThreadForegroundBlocking0 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 ??? 0x000000012e948492 ??? 3 ??? 0x000000012e9482cf ??? 4 ??? 0x000000012e8f076a ??? 5 ??? 0x000000012e8f1150 ??? 6 ??? 0x000000012e8f0d34 ??? 7 ??? 0x000000012e943e07 ??? 8 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 27:: MemoryInfra 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 ??? 0x000000012e948492 ??? 3 ??? 0x000000012e9482cf ??? 4 ??? 0x000000012e8701db ??? 5 ??? 0x000000012e8db62b ??? 6 ??? 0x000000012e89f7cb ??? 7 ??? 0x000000012e8faa7d ??? 8 ??? 0x000000012e943e07 ??? 9 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 28: 0 runtime 0x00007ffdffd7799c 0x7ffdffd1d000 + 371100 Thread 29:: Thread (pooled) 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10 2 ??? 0x0000000125ea3aaf ??? 3 ??? 0x0000000125ea377e ??? 4 ??? 0x0000000125ea369d ??? 5 ??? 0x0000000125e9fccd ??? 6 ??? 0x0000000125e9b619 ??? 7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 30:: Thread (pooled) 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10 2 ??? 0x0000000125ea3aaf ??? 3 ??? 0x0000000125ea377e ??? 4 ??? 0x0000000125ea369d ??? 5 ??? 0x0000000125e9fccd ??? 6 ??? 0x0000000125e9b619 ??? 7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 31:: Thread (pooled) 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10 2 ??? 0x0000000125ea3aaf ??? 3 ??? 0x0000000125ea377e ??? 4 ??? 0x0000000125ea369d ??? 5 ??? 0x0000000125e9fccd ??? 6 ??? 0x0000000125e9b619 ??? 7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 32:: Thread (pooled) 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10 2 ??? 0x0000000125ea3aaf ??? 3 ??? 0x0000000125ea377e ??? 4 ??? 0x0000000125ea369d ??? 5 ??? 0x0000000125e9fccd ??? 6 ??? 0x0000000125e9b619 ??? 7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 33:: Thread (pooled) 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10 2 ??? 0x0000000125ea3aaf ??? 3 ??? 0x0000000125ea377e ??? 4 ??? 0x0000000125ea369d ??? 5 ??? 0x0000000125e9fccd ??? 6 ??? 0x0000000125e9b619 ??? 7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 34:: Thread (pooled) 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10 2 ??? 0x0000000125ea3aaf ??? 3 ??? 0x0000000125ea377e ??? 4 ??? 0x0000000125ea369d ??? 5 ??? 0x0000000125e9fccd ??? 6 ??? 0x0000000125e9b619 ??? 7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 35:: Thread (pooled) 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10 2 ??? 0x0000000125ea3aaf ??? 3 ??? 0x0000000125ea377e ??? 4 ??? 0x0000000125ea369d ??? 5 ??? 0x0000000125e9fccd ??? 6 ??? 0x0000000125e9b619 ??? 7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 36:: Thread (pooled) 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10 2 ??? 0x0000000125ea3aaf ??? 3 ??? 0x0000000125ea377e ??? 4 ??? 0x0000000125ea369d ??? 5 ??? 0x0000000125e9fccd ??? 6 ??? 0x0000000125e9b619 ??? 7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 37: 0 runtime 0x00007ffdffd7799c 0x7ffdffd1d000 + 371100 Thread 38:: NetworkConfigWatcher 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 ??? 0x000000012e948492 ??? 3 ??? 0x000000012e9482cf ??? 4 ??? 0x000000012e8701db ??? 5 ??? 0x000000012e8db62b ??? 6 ??? 0x000000012e89f7cb ??? 7 ??? 0x000000012e8faa7d ??? 8 ??? 0x000000012e943e07 ??? 9 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 39: 0 runtime 0x00007ffdffd7799c 0x7ffdffd1d000 + 371100 Thread 40: 0 runtime 0x00007ffdffd7799c 0x7ffdffd1d000 + 371100 Thread 41: 0 runtime 0x00007ffdffd7799c 0x7ffdffd1d000 + 371100 Thread 42: 0 runtime 0x00007ffdffd7799c 0x7ffdffd1d000 + 371100 Thread 43:: com.apple.NSEventThread 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 com.apple.CoreFoundation 0x00007fff2043b8c5 __CFRunLoopServiceMachPort + 316 3 com.apple.CoreFoundation 0x00007fff20439f7b __CFRunLoopRun + 1332 4 com.apple.CoreFoundation 0x00007fff20439380 CFRunLoopRunSpecific + 567 5 ??? 0x00007fff22cea68a ??? 6 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 7 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 44:: ThreadPoolSingleThreadSharedBackgroundBlocking1 0 ??? 0x00007ffe942feab8 ??? 1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10 2 ??? 0x000000012e948492 ??? 3 ??? 0x000000012e9482cf ??? 4 ??? 0x000000012e8f076a ??? 5 ??? 0x000000012e8f0e3d ??? 6 ??? 0x000000012e8f0c74 ??? 7 ??? 0x000000012e943e07 ??? 8 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15 Thread 45: 0 runtime 0x00007ffdffd7799c 0x7ffdffd1d000 + 371100 Thread 46: 0 runtime 0x00007ffdffd7799c 0x7ffdffd1d000 + 371100 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x0000000204b62e00 rcx: 0x0000000000000000 rdx: 0x0000000000000000 rdi: 0xed57cd7a383edd65 rsi: 0x000000014d046088 rbp: 0xed57cd7a383edd65 rsp: 0x000000014d046088 r8: 0x000000000000000a r9: 0xed57cd7a383edd65 r10: 0x0000000204b62e00 r11: 0x00007fff20226bcb r12: 0x0000000000000103 r13: 0x0000000000000005 r14: 0x000000000000000a r15: 0x0000000000000016 rip: rfl: 0x0000000000000283 Binary Images: 0 - 0xffffffffffffffff +select.cpython-38-darwin.so (???) /private/var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/select.cpython-38-darwin.so 0x204a8b000 - 0x204b26fff dyld (852) /usr/lib/dyld 0x7ffdffd1d000 - 0x7ffdffd90fff +runtime (203.46) /Library/Apple/*/runtime 0x7fff2007a000 - 0x7fff2007bfff libsystem_blocks.dylib (79) /usr/lib/system/libsystem_blocks.dylib 0x7fff2007c000 - 0x7fff200b1fff libxpc.dylib (2038.120.1) /usr/lib/system/libxpc.dylib 0x7fff200b2000 - 0x7fff200c9fff libsystem_trace.dylib (1277.120.1) /usr/lib/system/libsystem_trace.dylib 0x7fff200ca000 - 0x7fff20167fff libcorecrypto.dylib (1000.120.2) /usr/lib/system/libcorecrypto.dylib 0x7fff20168000 - 0x7fff20194fff libsystem_malloc.dylib (317.121.1) /usr/lib/system/libsystem_malloc.dylib 0x7fff20195000 - 0x7fff201d9fff libdispatch.dylib (1271.120.2) /usr/lib/system/libdispatch.dylib 0x7fff201da000 - 0x7fff20213fff libobjc.A.dylib (824) /usr/lib/libobjc.A.dylib 0x7fff20214000 - 0x7fff20216fff libsystem_featureflags.dylib (28.60.1) /usr/lib/system/libsystem_featureflags.dylib 0x7fff20217000 - 0x7fff2029ffff libsystem_c.dylib (1439.100.3) /usr/lib/system/libsystem_c.dylib 0x7fff202a0000 - 0x7fff202f5fff libc++.1.dylib (905.6) /usr/lib/libc++.1.dylib 0x7fff202f6000 - 0x7fff2030bfff libc++abi.dylib (905.6) /usr/lib/libc++abi.dylib 0x7fff2030c000 - 0x7fff2033bfff libsystem_kernel.dylib (7195.121.3) /usr/lib/system/libsystem_kernel.dylib 0x7fff2033c000 - 0x7fff20347fff libsystem_pthread.dylib (454.120.2) /usr/lib/system/libsystem_pthread.dylib 0x7fff20348000 - 0x7fff20383fff libdyld.dylib (852) /usr/lib/system/libdyld.dylib 0x7fff20384000 - 0x7fff2038dfff libsystem_platform.dylib (254.80.2) /usr/lib/system/libsystem_platform.dylib 0x7fff2038e000 - 0x7fff203b9fff libsystem_info.dylib (542.40.3) /usr/lib/system/libsystem_info.dylib 0x7fff203ba000 - 0x7fff20857fff com.apple.CoreFoundation (6.9 - 1776.103) /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation 0x7fff2244d000 - 0x7fff226acfff libicucore.A.dylib (66112) /usr/lib/libicucore.A.dylib 0x7fff226ad000 - 0x7fff226b6fff libsystem_darwin.dylib (1439.100.3) /usr/lib/system/libsystem_darwin.dylib 0x7fff22acc000 - 0x7fff22ad7fff libsystem_notify.dylib (279.40.4) /usr/lib/system/libsystem_notify.dylib 0x7fff24a61000 - 0x7fff24a6ffff libsystem_networkextension.dylib (1295.120.5) /usr/lib/system/libsystem_networkextension.dylib 0x7fff24ace000 - 0x7fff24ae4fff libsystem_asl.dylib (385) /usr/lib/system/libsystem_asl.dylib 0x7fff261dd000 - 0x7fff261e4fff libsystem_symptoms.dylib (1431.120.1) /usr/lib/system/libsystem_symptoms.dylib 0x7fff284ef000 - 0x7fff284fffff libsystem_containermanager.dylib (318.100.4) /usr/lib/system/libsystem_containermanager.dylib 0x7fff2920b000 - 0x7fff2920efff libsystem_configuration.dylib (1109.120.1) /usr/lib/system/libsystem_configuration.dylib 0x7fff2920f000 - 0x7fff29213fff libsystem_sandbox.dylib (1441.120.5) /usr/lib/system/libsystem_sandbox.dylib 0x7fff29e13000 - 0x7fff29e15fff libquarantine.dylib (119.40.2) /usr/lib/system/libquarantine.dylib 0x7fff2a3b1000 - 0x7fff2a3bdfff libbz2.1.0.dylib (44) /usr/lib/libbz2.1.0.dylib 0x7fff2a3be000 - 0x7fff2a3c2fff libsystem_coreservices.dylib (127.1) /usr/lib/system/libsystem_coreservices.dylib 0x7fff2a5bf000 - 0x7fff2a5d1fff libz.1.dylib (76) /usr/lib/libz.1.dylib 0x7fff2a5d2000 - 0x7fff2a61dfff libsystem_m.dylib (3186.100.3) /usr/lib/system/libsystem_m.dylib 0x7fff2a61f000 - 0x7fff2a624fff libmacho.dylib (980) /usr/lib/system/libmacho.dylib 0x7fff2a641000 - 0x7fff2a64cfff libcommonCrypto.dylib (60178.120.3) /usr/lib/system/libcommonCrypto.dylib 0x7fff2a64d000 - 0x7fff2a657fff libunwind.dylib (201) /usr/lib/system/libunwind.dylib 0x7fff2a658000 - 0x7fff2a65ffff liboah.dylib (203.46) /usr/lib/liboah.dylib 0x7fff2a660000 - 0x7fff2a66afff libcopyfile.dylib (173.40.2) /usr/lib/system/libcopyfile.dylib 0x7fff2a66b000 - 0x7fff2a672fff libcompiler_rt.dylib (102.2) /usr/lib/system/libcompiler_rt.dylib 0x7fff2a673000 - 0x7fff2a675fff libsystem_collections.dylib (1439.100.3) /usr/lib/system/libsystem_collections.dylib 0x7fff2a676000 - 0x7fff2a678fff libsystem_secinit.dylib (87.60.1) /usr/lib/system/libsystem_secinit.dylib 0x7fff2a679000 - 0x7fff2a67bfff libremovefile.dylib (49.120.1) /usr/lib/system/libremovefile.dylib 0x7fff2a67c000 - 0x7fff2a67cfff libkeymgr.dylib (31) /usr/lib/system/libkeymgr.dylib 0x7fff2a67d000 - 0x7fff2a684fff libsystem_dnssd.dylib (1310.120.71) /usr/lib/system/libsystem_dnssd.dylib 0x7fff2a685000 - 0x7fff2a68afff libcache.dylib (83) /usr/lib/system/libcache.dylib 0x7fff2a68b000 - 0x7fff2a68cfff libSystem.B.dylib (1292.120.1) /usr/lib/libSystem.B.dylib 0x7fff2a68d000 - 0x7fff2a690fff libfakelink.dylib (3) /usr/lib/libfakelink.dylib 0x7fff2a691000 - 0x7fff2a691fff com.apple.SoftLinking (1.0 - 1) /System/Library/PrivateFrameworks/SoftLinking.framework/Versions/A/SoftLinking 0x7fff2dbe7000 - 0x7fff2dbe7fff liblaunch.dylib (2038.120.1) /usr/lib/system/liblaunch.dylib 0x7fff30076000 - 0x7fff30076fff libsystem_product_info_filter.dylib (8.40.1) /usr/lib/system/libsystem_product_info_filter.dylib 0x7fff5813a000 - 0x7fff58155fff libJapaneseConverter.dylib (90) /System/Library/CoreServices/Encodings/libJapaneseConverter.dylib Translated Code Information: tmp0: 0xffffffffffffffff tmp1: 0x00007ffe942fea8c tmp2: 0x00007fff20313924 External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 0 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=518.8M resident=0K(0%) swapped_out_or_unallocated=518.8M(100%) Writable regions: Total=2.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.2G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 128K 1 Activity Tracing 256K 1 CG backing stores 2880K 6 CG image 80K 8 CoreAnimation 80K 11 CoreGraphics 12K 2 CoreUI image data 2320K 18 Foundation 48K 2 Kernel Alloc Once 1384K 5 MALLOC 355.2M 69 MALLOC guard page 192K 8 MALLOC_MEDIUM (reserved) 896.0M 8 reserved VM address space (unallocated) MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated) Mach message 24K 6 OpenGL GLSL 384K 5 Rosetta Arena 2048K 1 Rosetta Generic 1568K 389 Rosetta IndirectBranch 2048K 1 Rosetta JIT 128.0M 1 Rosetta Return Stack 920K 92 Rosetta Thread Context 920K 92 STACK GUARD 44K 11 Stack 165.7M 46 Stack Guard 56.1M 35 VM_ALLOCATE 98.1M 166 VM_ALLOCATE (reserved) 160.0M 8 reserved VM address space (unallocated) __DATA 500K 51 __DATA_CONST 2985K 41 __DATA_DIRTY 95K 24 __LINKEDIT 506.3M 5 __OBJC_RO 70.2M 1 __OBJC_RW 2480K 2 __TEXT 12.6M 51 __UNICODE 588K 1 dylib 2088K 23 dylib (reserved) 88K 6 reserved VM address space (unallocated) mapped file 5.3G 861 shared memory 4564K 36 unshared pmap 10.5M 6 =========== ======= ======= TOTAL 8.1G 2101 TOTAL, minus reserved VM space 6.7G 2101 Log: UCSF ChimeraX version: 1.2.5 (2021-05-24) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 71.6.4 OpenGL renderer: Apple M1 OpenGL vendor: AppleHardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro17,1 Processor Name: Unknown Processor Speed: 2.4 GHz Number of Processors: 1 Total Number of Cores: 8 L2 Cache (per Core): 4 MB Memory: 16 GB Software: System Software Overview: System Version: macOS 11.4 (20F71) Kernel Version: Darwin 20.5.0 Time since boot: 19:32 Graphics/Displays: Apple M1: Chipset Model: Apple M1 Type: GPU Bus: Built-In Total Number of Cores: 8 Vendor: Apple (0x106b) Metal Family: Supported, Metal GPUFamily Apple 7 Displays: Color LCD: Resolution: 2560 x 1600 UI Looks like: 1280 x 800 @ 60.00Hz Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal Locale: (None, 'UTF-8') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.2 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2020.12.5 cftime: 1.5.0 chardet: 3.0.4 ChimeraX-AddCharge: 1.0.1 ChimeraX-AddH: 2.1.6 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.13.2 ChimeraX-AtomicLibrary: 3.1.3 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 1.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.5.2 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.1 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.1 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.2.1 ChimeraX-CommandLine: 1.1.4 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.2.5 ChimeraX-CoreFormats: 1.0 ChimeraX-coulombic: 1.1.1 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.1 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.3 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.0 ChimeraX-Hbonds: 2.1 ChimeraX-Help: 1.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.0 ChimeraX-ImageFormats: 1.1 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-Label: 1.0 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.0.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.0 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 1.2.1 ChimeraX-MDcrds: 2.2 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.3 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.0.1 ChimeraX-ModelPanel: 1.0.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.1 ChimeraX-OpenCommand: 1.5 ChimeraX-PDB: 2.4.1 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.1 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.0.1 ChimeraX-ReadPbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.4 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SeqView: 2.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.0 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.0.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.3.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.0.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.7.6 ChimeraX-uniprot: 2.1 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.3 comtypes: 1.1.7 cxservices: 1.0 cycler: 0.10.0 Cython: 0.29.21 decorator: 5.0.9 distlib: 0.3.1 docutils: 0.16 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 2.10.0 html2text: 2020.1.16 idna: 2.10 ihm: 0.17 imagecodecs: 2020.5.30 imagesize: 1.2.0 ipykernel: 5.3.4 ipython: 7.18.1 ipython-genutils: 0.2.0 jedi: 0.17.2 Jinja2: 2.11.2 jupyter-client: 6.1.7 jupyter-core: 4.7.1 kiwisolver: 1.3.1 line-profiler: 2.1.2 lxml: 4.6.2 lz4: 3.1.0 MarkupSafe: 2.0.1 matplotlib: 3.3.2 matplotlib-inline: 0.1.2 msgpack: 1.0.0 netCDF4: 1.5.4 networkx: 2.5 numexpr: 2.7.3 numpy: 1.19.2 numpydoc: 1.1.0 openvr: 1.14.1501 packaging: 20.9 ParmEd: 3.2.0 parso: 0.7.1 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 7.2.0 pip: 21.0.1 pkginfo: 1.5.0.1 prompt-toolkit: 3.0.18 psutil: 5.7.2 ptyprocess: 0.7.0 pycollada: 0.7.1 pydicom: 2.0.0 Pygments: 2.7.1 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.1 pytz: 2021.1 pyzmq: 22.0.3 qtconsole: 4.7.7 QtPy: 1.9.0 RandomWords: 0.3.0 requests: 2.24.0 scipy: 1.5.2 setuptools: 50.3.2 sfftk-rw: 0.6.7.dev1 six: 1.15.0 snowballstemmer: 2.1.0 sortedcontainers: 2.2.2 Sphinx: 3.2.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2020.9.3 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.0.5 urllib3: 1.25.11 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.36.0 wheel-filename: 1.3.0 }}} " defect closed normal General Controls can't reproduce all ChimeraX