id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 4823 Crash in QOpenGLFunctions::initializeOpenGLFunctions( chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Darwin-19.6.0-x86_64-i386-64bit ChimeraX Version: 1.1.1 (2020-10-07 08:32:49 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Process: ChimeraX [82164] Path: /Applications/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX Identifier: edu.ucsf.cgl.ChimeraX Version: 1.1.1 (1.1.1.0) Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: ChimeraX [82164] User ID: 504 Date/Time: 2021-06-22 23:04:32.626 -0700 OS Version: Mac OS X 10.15.7 (19H524) Report Version: 12 Bridge OS Version: 5.2 (18P4346) Anonymous UUID: 4D38E8B3-BCD5-4ED7-B4E0-209C8D1917B0 Sleep/Wake UUID: DF0A103E-56E3-4A97-8451-D82ACAB5FAEF Time Awake Since Boot: 440000 seconds Time Since Wake: 14000 seconds System Integrity Protection: enabled Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread Exception Type: EXC_BAD_ACCESS (SIGSEGV) Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000008 Exception Note: EXC_CORPSE_NOTIFY VM Regions Near 0x8: --> __TEXT 000000010ba53000-000000010ba54000 [ 4K] r-x/r-x SM=COW /Applications/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread 0 libsystem_kernel.dylib 0x00007fff6946b33a __pthread_kill + 10 1 libsystem_pthread.dylib 0x00007fff69527e60 pthread_kill + 430 2 libsystem_c.dylib 0x00007fff6938293e raise + 26 3 libsystem_platform.dylib 0x00007fff6951c5fd _sigtramp + 29 4 ??? 000000000000000000 0 + 0 5 QtGui 0x00000001213a614d 0x121077000 + 3338573 6 QtGui 0x00000001213a5570 QOpenGLFunctions::initializeOpenGLFunctions() + 16 7 QtGui 0x00000001213a6a96 0x121077000 + 3340950 8 QtGui 0x00000001213a7b86 QOpenGLFramebufferObject::QOpenGLFramebufferObject(QSize const&, QOpenGLFramebufferObjectFormat const&) + 230 9 QtQuickWidgets 0x000000012b3b0b0a QQuickWidget::createFramebufferObject() + 1338 10 QtQuickWidgets 0x000000012b3b22b6 QQuickWidget::event(QEvent*) + 758 11 QtWebEngineWidgets 0x0000000123fba0e7 0x123f9f000 + 110823 12 QtWidgets 0x0000000120ad667d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269 13 QtWidgets 0x0000000120ad7a82 QApplication::notify(QObject*, QEvent*) + 594 14 QtWidgets.so 0x00000001206963ca sipQApplication::notify(QObject*, QEvent*) + 234 15 QtCore 0x00000001217c2324 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212 16 QtWidgets 0x0000000120b3428a 0x120ac6000 + 451210 17 QtWidgets 0x0000000120b342c0 0x120ac6000 + 451264 18 QtWidgets 0x0000000120b342c0 0x120ac6000 + 451264 19 QtWidgets 0x0000000120b342c0 0x120ac6000 + 451264 20 QtWidgets 0x0000000120b342c0 0x120ac6000 + 451264 21 QtWidgets 0x0000000120b34728 0x120ac6000 + 452392 22 QtCore 0x00000001217f368c QMetaObject::activate(QObject*, int, int, void**) + 3132 23 QtGui 0x00000001210b65cb QWindowPrivate::emitScreenChangedRecursion(QScreen*) + 75 24 QtGui 0x00000001210b6983 QWindowPrivate::setTopLevelScreen(QScreen*, bool) + 755 25 QtGui 0x00000001210ae70f QGuiApplicationPrivate::processWindowScreenChangedEvent(QWindowSystemInterfacePrivate::WindowScreenChangedEvent*) + 159 26 QtGui 0x000000012108d0e3 bool QWindowSystemInterfacePrivate::handleWindowSystemEvent(QWindowSystemInterfacePrivate::WindowSystemEvent*) + 115 27 libqcocoa.dylib 0x000000012b5bf01e 0x12b5a0000 + 127006 28 QtCore 0x00000001217cc6bf QMetaMethod::invoke(QObject*, Qt::ConnectionType, QGenericReturnArgument, 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com.apple.CoreFoundation 0x00007fff2f41c9ec __CFRUNLOOP_IS_CALLING_OUT_TO_A_BLOCK__ + 12 49 com.apple.CoreFoundation 0x00007fff2f41c934 __CFRunLoopDoBlocks + 379 50 com.apple.CoreFoundation 0x00007fff2f41be2d __CFRunLoopRun + 2450 51 com.apple.CoreFoundation 0x00007fff2f41ae3e CFRunLoopRunSpecific + 462 52 com.apple.HIToolbox 0x00007fff2e047abd RunCurrentEventLoopInMode + 292 53 com.apple.HIToolbox 0x00007fff2e0477d5 ReceiveNextEventCommon + 584 54 com.apple.HIToolbox 0x00007fff2e047579 _BlockUntilNextEventMatchingListInModeWithFilter + 64 55 com.apple.AppKit 0x00007fff2c68d039 _DPSNextEvent + 883 56 com.apple.AppKit 0x00007fff2c68b880 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352 57 com.apple.AppKit 0x00007fff2c67d58e -[NSApplication run] + 658 58 libqcocoa.dylib 0x000000012b5d5de3 0x12b5a0000 + 220643 59 QtCore 0x00000001217bd93f QEventLoop::exec(QFlags) + 431 60 QtCore 0x00000001217c2932 QCoreApplication::exec() + 130 61 QtWidgets.so 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0x0000000126166085 0x123fe7000 + 35123333 5 QtWebEngineCore 0x00000001261b89bc 0x123fe7000 + 35461564 6 QtWebEngineCore 0x00000001261f8717 0x123fe7000 + 35723031 7 libsystem_pthread.dylib 0x00007fff69528109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff69523b8b thread_start + 15 Thread 22:: Chrome_ChildIOThread 0 libsystem_kernel.dylib 0x00007fff69469766 kevent + 10 1 QtWebEngineCore 0x000000012644a9a9 0x123fe7000 + 38156713 2 QtWebEngineCore 0x0000000126447cbd 0x123fe7000 + 38145213 3 QtWebEngineCore 0x00000001261fecdc 0x123fe7000 + 35749084 4 QtWebEngineCore 0x0000000126166085 0x123fe7000 + 35123333 5 QtWebEngineCore 0x00000001261b89bc 0x123fe7000 + 35461564 6 QtWebEngineCore 0x00000001261f8717 0x123fe7000 + 35723031 7 libsystem_pthread.dylib 0x00007fff69528109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff69523b8b thread_start + 15 Thread 23:: TaskSchedulerSingleThreadForegroundBlocking1 0 libsystem_kernel.dylib 0x00007fff69464dfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff69465170 mach_msg + 60 2 QtWebEngineCore 0x000000012618932d 0x123fe7000 + 35267373 3 QtWebEngineCore 0x000000012618922f 0x123fe7000 + 35267119 4 QtWebEngineCore 0x00000001261a0d1a 0x123fe7000 + 35364122 5 QtWebEngineCore 0x00000001261a165b 0x123fe7000 + 35366491 6 QtWebEngineCore 0x00000001261a1324 0x123fe7000 + 35365668 7 QtWebEngineCore 0x00000001261f8717 0x123fe7000 + 35723031 8 libsystem_pthread.dylib 0x00007fff69528109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff69523b8b thread_start + 15 Thread 24:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff69464dfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff69465170 mach_msg + 60 2 QtWebEngineCore 0x000000012618932d 0x123fe7000 + 35267373 3 QtWebEngineCore 0x000000012618922f 0x123fe7000 + 35267119 4 QtWebEngineCore 0x000000012613d05d 0x123fe7000 + 34955357 5 QtWebEngineCore 0x0000000126166085 0x123fe7000 + 35123333 6 QtWebEngineCore 0x00000001261b89bc 0x123fe7000 + 35461564 7 QtWebEngineCore 0x00000001261f8717 0x123fe7000 + 35723031 8 libsystem_pthread.dylib 0x00007fff69528109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff69523b8b thread_start + 15 Thread 25: 0 libsystem_kernel.dylib 0x00007fff69467882 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff69528425 _pthread_cond_wait + 698 2 libopenblasp-r0.3.7.dylib 0x0000000140e07c3b blas_thread_server + 619 3 libsystem_pthread.dylib 0x00007fff69528109 _pthread_start + 148 4 libsystem_pthread.dylib 0x00007fff69523b8b thread_start + 15 Thread 26: 0 libsystem_kernel.dylib 0x00007fff69467882 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff69528425 _pthread_cond_wait + 698 2 libopenblasp-r0.3.7.dylib 0x0000000140e07c3b blas_thread_server + 619 3 libsystem_pthread.dylib 0x00007fff69528109 _pthread_start + 148 4 libsystem_pthread.dylib 0x00007fff69523b8b thread_start + 15 Thread 27: 0 libsystem_kernel.dylib 0x00007fff69467882 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff69528425 _pthread_cond_wait + 698 2 libopenblasp-r0.3.7.dylib 0x0000000140e07c3b blas_thread_server + 619 3 libsystem_pthread.dylib 0x00007fff69528109 _pthread_start + 148 4 libsystem_pthread.dylib 0x00007fff69523b8b thread_start + 15 Thread 28: 0 libsystem_kernel.dylib 0x00007fff69467882 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff69528425 _pthread_cond_wait + 698 2 libopenblasp-r0.3.7.dylib 0x0000000140e07c3b blas_thread_server + 619 3 libsystem_pthread.dylib 0x00007fff69528109 _pthread_start + 148 4 libsystem_pthread.dylib 0x00007fff69523b8b thread_start + 15 Thread 29: 0 libsystem_kernel.dylib 0x00007fff69467882 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff69528425 _pthread_cond_wait + 698 2 libopenblasp-r0.3.7.dylib 0x0000000140e07c3b blas_thread_server + 619 3 libsystem_pthread.dylib 0x00007fff69528109 _pthread_start + 148 4 libsystem_pthread.dylib 0x00007fff69523b8b thread_start + 15 Thread 30: 0 libsystem_kernel.dylib 0x00007fff69467882 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff69528425 _pthread_cond_wait + 698 2 libopenblasp-r0.3.7.dylib 0x0000000140e07c3b blas_thread_server + 619 3 libsystem_pthread.dylib 0x00007fff69528109 _pthread_start + 148 4 libsystem_pthread.dylib 0x00007fff69523b8b thread_start + 15 Thread 31: 0 libsystem_kernel.dylib 0x00007fff69467882 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff69528425 _pthread_cond_wait + 698 2 libopenblasp-r0.3.7.dylib 0x0000000140e07c3b blas_thread_server + 619 3 libsystem_pthread.dylib 0x00007fff69528109 _pthread_start + 148 4 libsystem_pthread.dylib 0x00007fff69523b8b thread_start + 15 Thread 32: 0 libsystem_pthread.dylib 0x00007fff69523b68 start_wqthread + 0 Thread 33: 0 libsystem_pthread.dylib 0x00007fff69523b68 start_wqthread + 0 Thread 34: 0 libsystem_pthread.dylib 0x00007fff69523b68 start_wqthread + 0 Thread 35: 0 libsystem_pthread.dylib 0x00007fff69523b68 start_wqthread + 0 Thread 36: 0 libsystem_pthread.dylib 0x00007fff69523b68 start_wqthread + 0 Thread 37: 0 libsystem_pthread.dylib 0x00007fff69523b68 start_wqthread + 0 Thread 38: 0 libsystem_pthread.dylib 0x00007fff69523b68 start_wqthread + 0 Thread 39: 0 libsystem_pthread.dylib 0x00007fff69523b68 start_wqthread + 0 Thread 40: 0 libsystem_pthread.dylib 0x00007fff69523b68 start_wqthread + 0 Thread 41: 0 libsystem_pthread.dylib 0x00007fff69523b68 start_wqthread + 0 Thread 42: 0 libsystem_pthread.dylib 0x00007fff69523b68 start_wqthread + 0 Thread 43: 0 libsystem_pthread.dylib 0x00007fff69523b68 start_wqthread + 0 Thread 44: 0 libsystem_pthread.dylib 0x00007fff69523b68 start_wqthread + 0 Thread 45: 0 libsystem_pthread.dylib 0x00007fff69523b68 start_wqthread + 0 Thread 46: 0 libsystem_pthread.dylib 0x00007fff69523b68 start_wqthread + 0 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x000000010e032dc0 rcx: 0x00007f898808fa58 rdx: 0x0000000000000000 rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x00007f898808fa80 rsp: 0x00007f898808fa58 r8: 0x00007f898808ff48 r9: 0xef82c9c7a2ee77fd r10: 0x000000010e032dc0 r11: 0x0000000000000246 r12: 0x0000000000000307 r13: 0x00007ffee41a7db0 r14: 0x000000000000000b r15: 0x0000000000000016 rip: 0x00007fff6946b33a rfl: 0x0000000000000246 cr2: 0x000000010bc577c8 Logical CPU: 0 Error Code: 0x02000148 Trap Number: 133 Binary Images: 0x10ba53000 - 0x10ba53ff3 +edu.ucsf.cgl.ChimeraX (1.1.1 - 1.1.1.0) /Applications/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX 0x10ba5b000 - 0x10bc56fff +org.python.python (3.7.8, [c] 2001-2019 Python Software Foundation. - 3.7.8) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/Python 0x10bfe8000 - 0x10bfe9ff7 +_heapq.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_heapq.cpython-37m-darwin.so 0x10c0b2000 - 0x10c0b5ff3 +zlib.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/zlib.cpython-37m-darwin.so 0x10c0bf000 - 0x10c0d3ff7 +libz.1.2.11.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/libz.1.2.11.dylib 0x10c11d000 - 0x10c11eff7 +_bz2.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_bz2.cpython-37m-darwin.so 0x10c127000 - 0x10c12afff +_lzma.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_lzma.cpython-37m-darwin.so 0x10c135000 - 0x10c135ffb +grp.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/grp.cpython-37m-darwin.so 0x10c17d000 - 0x10c182ffb +math.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/math.cpython-37m-darwin.so 0x10c18e000 - 0x10c190ff3 +_hashlib.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_hashlib.cpython-37m-darwin.so 0x10c19a000 - 0x10c1f7ff7 +libssl.1.1.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/libssl.1.1.dylib 0x10c226000 - 0x10c3edb13 +libcrypto.1.1.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/libcrypto.1.1.dylib 0x10c486000 - 0x10c48bff3 +_blake2.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_blake2.cpython-37m-darwin.so 0x10c495000 - 0x10c4a5ff7 +_sha3.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_sha3.cpython-37m-darwin.so 0x10c4b0000 - 0x10c4b0ffb +_bisect.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_bisect.cpython-37m-darwin.so 0x10c4b8000 - 0x10c4b9ffb +_random.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_random.cpython-37m-darwin.so 0x10c581000 - 0x10c587ffb +_json.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_json.cpython-37m-darwin.so 0x10c5d0000 - 0x10c5ddff7 +_ssl.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_ssl.cpython-37m-darwin.so 0x10c5f3000 - 0x10c5fcffb +_socket.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_socket.cpython-37m-darwin.so 0x10c64e000 - 0x10c651fff +select.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/select.cpython-37m-darwin.so 0x10c65c000 - 0x10c660ffb +_struct.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_struct.cpython-37m-darwin.so 0x10c66e000 - 0x10c672ff7 +binascii.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/binascii.cpython-37m-darwin.so 0x10c77b000 - 0x10c789ff3 +_datetime.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_datetime.cpython-37m-darwin.so 0x10c7d9000 - 0x10c7d9ff3 +_scproxy.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_scproxy.cpython-37m-darwin.so 0x10c7e1000 - 0x10c81fff7 +_decimal.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_decimal.cpython-37m-darwin.so 0x10c883000 - 0x10c8b0ff3 +pyexpat.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/pyexpat.cpython-37m-darwin.so 0x10c8c8000 - 0x10c8c9ff3 +_queue.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_queue.cpython-37m-darwin.so 0x10c992000 - 0x10c993fff +_posixsubprocess.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_posixsubprocess.cpython-37m-darwin.so 0x10c9db000 - 0x10c9edfff +_pickle.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_pickle.cpython-37m-darwin.so 0x10ca3e000 - 0x10ca41ffb +_csv.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_csv.cpython-37m-darwin.so 0x10cbcc000 - 0x10cf2ffe7 +_multiarray_umath.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/_multiarray_umath.cpython-37m-darwin.so 0x10d055000 - 0x10d16cff7 +libgfortran.3.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/python3.7/site-packages/numpy/.dylibs/libgfortran.3.dylib 0x10d1da000 - 0x10d210fff 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/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_common.cpython-37m-darwin.so 0x10d773000 - 0x10d7c7fff +_bounded_integers.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_bounded_integers.cpython-37m-darwin.so 0x10d7ef000 - 0x10d801ffb +_mt19937.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_mt19937.cpython-37m-darwin.so 0x10d812000 - 0x10d81effb +_philox.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_philox.cpython-37m-darwin.so 0x10d82e000 - 0x10d838fff +_pcg64.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_pcg64.cpython-37m-darwin.so 0x10d848000 - 0x10d84fff3 +_sfc64.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_sfc64.cpython-37m-darwin.so 0x10d85e000 - 0x10d8e0fff +_generator.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_generator.cpython-37m-darwin.so 0x10da40000 - 0x10da41ff7 +_appdirs.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/core/_appdirs.so 0x10da49000 - 0x10da4affb +libappdirs.dylib (0) /Applications/ChimeraX-1.1.1.app/Contents/lib/libappdirs.dylib 0x10da52000 - 0x10da73ffb +_serialize.cpython-37m-darwin.so (0) 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0x7fff66147fff libMatch.1.dylib (36) /usr/lib/libMatch.1.dylib 0x7fff66176000 - 0x7fff66196ff7 libMobileGestalt.dylib (826.140.5) /usr/lib/libMobileGestalt.dylib 0x7fff66216000 - 0x7fff662f3ff7 libSMC.dylib (20) /usr/lib/libSMC.dylib 0x7fff66308000 - 0x7fff66309fff libSystem.B.dylib (1281.100.1) /usr/lib/libSystem.B.dylib 0x7fff6630a000 - 0x7fff66395ff7 libTelephonyUtilDynamic.dylib (5017.1) /usr/lib/libTelephonyUtilDynamic.dylib 0x7fff66396000 - 0x7fff66397fff libThaiTokenizer.dylib (3) /usr/lib/libThaiTokenizer.dylib 0x7fff663af000 - 0x7fff663c5fff libapple_nghttp2.dylib (1.39.2) /usr/lib/libapple_nghttp2.dylib 0x7fff663fa000 - 0x7fff6646cff7 libarchive.2.dylib (72.140.2) /usr/lib/libarchive.2.dylib 0x7fff6646d000 - 0x7fff66506fe5 libate.dylib (3.0.1) /usr/lib/libate.dylib 0x7fff6650a000 - 0x7fff6650aff3 libauto.dylib (187) /usr/lib/libauto.dylib 0x7fff6650b000 - 0x7fff665cfffe libboringssl.dylib (283.120.1) /usr/lib/libboringssl.dylib 0x7fff665d0000 - 0x7fff665e0ffb libbsm.0.dylib (60.100.1) /usr/lib/libbsm.0.dylib 0x7fff665e1000 - 0x7fff665edfff libbz2.1.0.dylib (44) /usr/lib/libbz2.1.0.dylib 0x7fff665ee000 - 0x7fff66640fff libc++.1.dylib (902.1) /usr/lib/libc++.1.dylib 0x7fff66641000 - 0x7fff66656ffb libc++abi.dylib (902) /usr/lib/libc++abi.dylib 0x7fff66657000 - 0x7fff66657fff libcharset.1.dylib (59) /usr/lib/libcharset.1.dylib 0x7fff66658000 - 0x7fff66669fff libcmph.dylib (8) /usr/lib/libcmph.dylib 0x7fff6666a000 - 0x7fff66681fd7 libcompression.dylib (87) /usr/lib/libcompression.dylib 0x7fff6695b000 - 0x7fff66971ff7 libcoretls.dylib (167) /usr/lib/libcoretls.dylib 0x7fff66972000 - 0x7fff66973fff libcoretls_cfhelpers.dylib (167) /usr/lib/libcoretls_cfhelpers.dylib 0x7fff66e16000 - 0x7fff66f1afef libcrypto.44.dylib (47.140.1) /usr/lib/libcrypto.44.dylib 0x7fff66f1d000 - 0x7fff66f28fff libcsfde.dylib (551) /usr/lib/libcsfde.dylib 0x7fff66f30000 - 0x7fff66f8fff7 libcups.2.dylib (483.7) /usr/lib/libcups.2.dylib 0x7fff66f91000 - 0x7fff66ff6ff7 libcurl.4.dylib (118.120.2) /usr/lib/libcurl.4.dylib 0x7fff67099000 - 0x7fff67099fff libenergytrace.dylib (21) /usr/lib/libenergytrace.dylib 0x7fff6709a000 - 0x7fff670b2fff libexpat.1.dylib (19.60.2) /usr/lib/libexpat.1.dylib 0x7fff670c0000 - 0x7fff670c2fff libfakelink.dylib (149.1) /usr/lib/libfakelink.dylib 0x7fff670d1000 - 0x7fff670d6fff libgermantok.dylib (24) /usr/lib/libgermantok.dylib 0x7fff670d7000 - 0x7fff670e0ff7 libheimdal-asn1.dylib (564.140.1) /usr/lib/libheimdal-asn1.dylib 0x7fff670e1000 - 0x7fff671d1fff libiconv.2.dylib (59) /usr/lib/libiconv.2.dylib 0x7fff671d2000 - 0x7fff67429fff libicucore.A.dylib (64260.0.1) /usr/lib/libicucore.A.dylib 0x7fff67443000 - 0x7fff67444fff liblangid.dylib (133) /usr/lib/liblangid.dylib 0x7fff67445000 - 0x7fff6745dff3 liblzma.5.dylib (16) /usr/lib/liblzma.5.dylib 0x7fff67475000 - 0x7fff6751cff7 libmecab.dylib (883.11) /usr/lib/libmecab.dylib 0x7fff6751d000 - 0x7fff6777fff1 libmecabra.dylib (883.11) /usr/lib/libmecabra.dylib 0x7fff67aec000 - 0x7fff67b1bfff libncurses.5.4.dylib (57) /usr/lib/libncurses.5.4.dylib 0x7fff67c4b000 - 0x7fff680c7ff5 libnetwork.dylib (1880.120.4) /usr/lib/libnetwork.dylib 0x7fff680c8000 - 0x7fff680dffff libnetworkextension.dylib (1095.140.2) /usr/lib/libnetworkextension.dylib 0x7fff68168000 - 0x7fff6819bfde libobjc.A.dylib (787.1) /usr/lib/libobjc.A.dylib 0x7fff6819c000 - 0x7fff6819dff7 libodfde.dylib (26) /usr/lib/libodfde.dylib 0x7fff681ae000 - 0x7fff681b2fff libpam.2.dylib (25.100.1) /usr/lib/libpam.2.dylib 0x7fff681b5000 - 0x7fff681ebff7 libpcap.A.dylib (89.120.1) /usr/lib/libpcap.A.dylib 0x7fff6822b000 - 0x7fff68239ff9 libperfcheck.dylib (37.100.2) /usr/lib/libperfcheck.dylib 0x7fff6826f000 - 0x7fff68287fff libresolv.9.dylib (67.40.1) /usr/lib/libresolv.9.dylib 0x7fff68289000 - 0x7fff682cdff7 libsandbox.1.dylib (1217.141.2) /usr/lib/libsandbox.1.dylib 0x7fff682ce000 - 0x7fff682e0ff7 libsasl2.2.dylib (213.120.1) /usr/lib/libsasl2.2.dylib 0x7fff682e1000 - 0x7fff682e2ff7 libspindump.dylib (281.3) /usr/lib/libspindump.dylib 0x7fff682e3000 - 0x7fff684cdff7 libsqlite3.dylib (308.6) /usr/lib/libsqlite3.dylib 0x7fff685c1000 - 0x7fff685eeffb libssl.46.dylib (47.140.1) /usr/lib/libssl.46.dylib 0x7fff686c3000 - 0x7fff6871dff8 libusrtcp.dylib (1880.120.4) /usr/lib/libusrtcp.dylib 0x7fff6871e000 - 0x7fff68721ffb libutil.dylib (57) /usr/lib/libutil.dylib 0x7fff68722000 - 0x7fff6872fff7 libxar.1.dylib (425.2) /usr/lib/libxar.1.dylib 0x7fff68735000 - 0x7fff68817fff libxml2.2.dylib (33.8) /usr/lib/libxml2.2.dylib 0x7fff6881b000 - 0x7fff68843fff libxslt.1.dylib (16.10) /usr/lib/libxslt.1.dylib 0x7fff68844000 - 0x7fff68856ff3 libz.1.dylib (76) /usr/lib/libz.1.dylib 0x7fff69105000 - 0x7fff6910aff3 libcache.dylib (83) /usr/lib/system/libcache.dylib 0x7fff6910b000 - 0x7fff69116fff libcommonCrypto.dylib (60165.120.1) /usr/lib/system/libcommonCrypto.dylib 0x7fff69117000 - 0x7fff6911efff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib 0x7fff6911f000 - 0x7fff69128ff7 libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib 0x7fff69129000 - 0x7fff691bbfdb libcorecrypto.dylib (866.140.1) /usr/lib/system/libcorecrypto.dylib 0x7fff692c8000 - 0x7fff69308ff0 libdispatch.dylib (1173.100.2) /usr/lib/system/libdispatch.dylib 0x7fff69309000 - 0x7fff6933ffff libdyld.dylib (750.6) /usr/lib/system/libdyld.dylib 0x7fff69340000 - 0x7fff69340ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib 0x7fff69341000 - 0x7fff6934dff3 libkxld.dylib (6153.141.16) /usr/lib/system/libkxld.dylib 0x7fff6934e000 - 0x7fff6934eff7 liblaunch.dylib (1738.140.2) /usr/lib/system/liblaunch.dylib 0x7fff6934f000 - 0x7fff69354ff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib 0x7fff69355000 - 0x7fff69357ff3 libquarantine.dylib (110.40.3) /usr/lib/system/libquarantine.dylib 0x7fff69358000 - 0x7fff69359ff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib 0x7fff6935a000 - 0x7fff69371ff3 libsystem_asl.dylib (377.60.2) /usr/lib/system/libsystem_asl.dylib 0x7fff69372000 - 0x7fff69372ff7 libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib 0x7fff69373000 - 0x7fff693fafff libsystem_c.dylib (1353.100.2) /usr/lib/system/libsystem_c.dylib 0x7fff693fb000 - 0x7fff693feffb libsystem_configuration.dylib (1061.141.1) /usr/lib/system/libsystem_configuration.dylib 0x7fff693ff000 - 0x7fff69402fff libsystem_coreservices.dylib (114) /usr/lib/system/libsystem_coreservices.dylib 0x7fff69403000 - 0x7fff6940bfff libsystem_darwin.dylib (1353.100.2) /usr/lib/system/libsystem_darwin.dylib 0x7fff6940c000 - 0x7fff69413fff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib 0x7fff69414000 - 0x7fff69415ffb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib 0x7fff69416000 - 0x7fff69463ff7 libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib 0x7fff69464000 - 0x7fff69490ff7 libsystem_kernel.dylib (6153.141.16) /usr/lib/system/libsystem_kernel.dylib 0x7fff69491000 - 0x7fff694d8fff libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib 0x7fff694d9000 - 0x7fff69500fff libsystem_malloc.dylib (283.100.6) /usr/lib/system/libsystem_malloc.dylib 0x7fff69501000 - 0x7fff6950effb libsystem_networkextension.dylib (1095.140.2) /usr/lib/system/libsystem_networkextension.dylib 0x7fff6950f000 - 0x7fff69518ff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib 0x7fff69519000 - 0x7fff69521fef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib 0x7fff69522000 - 0x7fff6952cfff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib 0x7fff6952d000 - 0x7fff69531ff3 libsystem_sandbox.dylib (1217.141.2) /usr/lib/system/libsystem_sandbox.dylib 0x7fff69532000 - 0x7fff69534fff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib 0x7fff69535000 - 0x7fff6953cffb libsystem_symptoms.dylib (1238.120.2) /usr/lib/system/libsystem_symptoms.dylib 0x7fff6953d000 - 0x7fff69553ff2 libsystem_trace.dylib (1147.120.1) /usr/lib/system/libsystem_trace.dylib 0x7fff69555000 - 0x7fff6955aff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib 0x7fff6955b000 - 0x7fff69590ffe libxpc.dylib (1738.140.2) /usr/lib/system/libxpc.dylib External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 275 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 388589 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=1.0G resident=0K(0%) swapped_out_or_unallocated=1.0G(100%) Writable regions: Total=3.9G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=3.9G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 640K 5 Activity Tracing 256K 1 CG backing stores 5700K 7 CG image 216K 25 CoreAnimation 320K 45 CoreGraphics 8K 1 CoreImage 64K 8 CoreUI image data 3872K 46 Foundation 28K 2 Kernel Alloc Once 8K 1 MALLOC 1.7G 245 MALLOC guard page 48K 10 MALLOC_MEDIUM (reserved) 1.4G 16 reserved VM address space (unallocated) OpenGL GLSL 512K 6 PROTECTED_MEMORY 4K 1 STACK GUARD 184K 46 Stack 151.4M 47 Stack Guard 56.0M 1 VM_ALLOCATE 284.5M 597 VM_ALLOCATE (reserved) 384.0M 2 reserved VM address space (unallocated) __DATA 65.7M 618 __DATA_CONST 132K 6 __FONT_DATA 4K 1 __GLSLBUILTINS 5176K 1 __LINKEDIT 422.4M 190 __OBJC_RO 32.3M 1 __OBJC_RW 1908K 2 __TEXT 614.5M 563 __UNICODE 564K 1 mapped file 92.6M 40 shared memory 664K 20 =========== ======= ======= TOTAL 5.2G 2555 TOTAL, minus reserved VM space 3.4G 2555 Log: UCSF ChimeraX version: 1.1.1 (2020-10-07) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/Ian/Dropbox (Scripps > Research)/MANUSCRIPTS/IN_PROGRESS/HCV_miR122/40S+IRES-WT+PCBP2 initial > model/210204_40S+IRES-WT+PCBP2_with5a2qfit.pyc"" Failed opening file /Users/Ian/Dropbox (Scripps Research)/MANUSCRIPTS/IN_PROGRESS/HCV_miR122/40S+IRES-WT+PCBP2 initial model/210204_40S+IRES-WT+PCBP2_with5a2qfit.pyc: Python code was compiled for a different version of Python OpenGL version: 4.1 ATI-3.10.19 OpenGL renderer: AMD Radeon Pro 5500M OpenGL Engine OpenGL vendor: ATI Technologies Inc.Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro16,1 Processor Name: 8-Core Intel Core i9 Processor Speed: 2.4 GHz Number of Processors: 1 Total Number of Cores: 8 L2 Cache (per Core): 256 KB L3 Cache: 16 MB Hyper-Threading Technology: Enabled Memory: 32 GB Boot ROM Version: 1554.80.3.0.0 (iBridge: 18.16.14346.0.0,0) Software: System Software Overview: System Version: macOS 10.15.7 (19H524) Kernel Version: Darwin 19.6.0 Time since boot: 16 days 21:12 Graphics/Displays: Intel UHD Graphics 630: Chipset Model: Intel UHD Graphics 630 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x3e9b Revision ID: 0x0002 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal: Supported, feature set macOS GPUFamily2 v1 AMD Radeon Pro 5500M: Chipset Model: AMD Radeon Pro 5500M Type: GPU Bus: PCIe PCIe Lane Width: x8 VRAM (Total): 8 GB Vendor: AMD (0x1002) Device ID: 0x7340 Revision ID: 0x0040 ROM Revision: 113-D3220E-190 VBIOS Version: 113-D32206U1-019 Option ROM Version: 113-D32206U1-019 EFI Driver Version: 01.A1.190 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal: Supported, feature set macOS GPUFamily2 v1 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 3072 x 1920 Retina Framebuffer Depth: 24-Bit Color (ARGB8888) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal LG UltraFine: Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition) UI Looks like: 2560 x 1440 Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: 910NTMX2F947 Mirror: Off Online: Yes Rotation: Supported Automatically Adjust Brightness: No Connection Type: Thunderbolt/DisplayPort PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.9 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.0 Babel: 2.8.0 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2020.6.20 chardet: 3.0.4 ChimeraX-AddH: 2.1.3 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.1 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.6.1 ChimeraX-AtomSearch: 2.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 1.0.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.0 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.0 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.1 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.0 ChimeraX-Clipper: 0.15.0 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-CommandLine: 1.1.3 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.1.1 ChimeraX-CoreFormats: 1.0 ChimeraX-coulombic: 1.0.1 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-DataFormats: 1.0 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.0 ChimeraX-Hbonds: 2.0 ChimeraX-Help: 1.0 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.0 ChimeraX-ImageFormats: 1.0 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0 ChimeraX-Label: 1.0 ChimeraX-ListInfo: 1.0 ChimeraX-Log: 1.1.1 ChimeraX-LookingGlass: 1.1 ChimeraX-Map: 1.0.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.0 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 1.1 ChimeraX-MDcrds: 2.0 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.0 ChimeraX-mmCIF: 2.2 ChimeraX-MMTF: 2.0 ChimeraX-Modeller: 1.0 ChimeraX-ModelPanel: 1.0 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.0 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0 ChimeraX-OpenCommand: 1.2.1 ChimeraX-PDB: 2.1 ChimeraX-PDBBio: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0 ChimeraX-PubChem: 2.0 ChimeraX-Read-Pbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.0 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.2 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SeqView: 2.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.0 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.0 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.0.4 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.0 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.0 ChimeraX-ToolshedUtils: 1.0 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.2.3 ChimeraX-uniprot: 2.0 ChimeraX-ViewDockX: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.3 comtypes: 1.1.7 cxservices: 1.0 cycler: 0.10.0 Cython: 0.29.20 decorator: 4.4.2 distlib: 0.3.1 docutils: 0.16 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 2.10.0 html2text: 2020.1.16 idna: 2.10 ihm: 0.16 imagecodecs: 2020.5.30 imagecodecs-lite: 2020.1.31 imagesize: 1.2.0 ipykernel: 5.3.0 ipython: 7.15.0 ipython-genutils: 0.2.0 jedi: 0.17.2 Jinja2: 2.11.2 jupyter-client: 6.1.3 jupyter-core: 4.6.3 kiwisolver: 1.2.0 line-profiler: 2.1.2 lxml: 4.5.1 MarkupSafe: 1.1.1 matplotlib: 3.2.1 msgpack: 1.0.0 netifaces: 0.10.9 networkx: 2.4 numexpr: 2.7.1 numpy: 1.18.5 numpydoc: 1.0.0 openvr: 1.12.501 packaging: 20.4 parso: 0.7.1 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 7.1.2 pip: 20.2.2 pkginfo: 1.5.0.1 prompt-toolkit: 3.0.7 psutil: 5.7.0 ptyprocess: 0.6.0 pycollada: 0.7.1 pydicom: 2.0.0 Pygments: 2.6.1 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.12.3 PyQt5-sip: 4.19.19 PyQtWebEngine-commercial: 5.12.1 python-dateutil: 2.8.1 pytz: 2020.1 pyzmq: 19.0.2 qtconsole: 4.7.4 QtPy: 1.9.0 RandomWords: 0.3.0 requests: 2.24.0 scipy: 1.4.1 setuptools: 49.4.0 sfftk-rw: 0.6.6.dev0 six: 1.15.0 snowballstemmer: 2.0.0 sortedcontainers: 2.2.2 Sphinx: 3.1.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 1.0.3 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.4 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2020.6.3 tinyarray: 1.2.2 tornado: 6.0.4 traitlets: 5.0.4 urllib3: 1.25.10 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.34.2 }}} " defect closed normal Graphics nonchimerax all ChimeraX