id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 4787 Graphics crash, macOS 11.4, Radeon Pro 580X, report 2 chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Aborted Current thread 0x0000000111309e00 (most recent call first): File ""/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/graphics/opengl.py"", line 2692 in draw_elements File ""/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/graphics/drawing.py"", line 1695 in draw File ""/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/graphics/drawing.py"", line 823 in _draw_geometry File ""/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/graphics/drawing.py"", line 758 in draw_self File ""/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/graphics/drawing.py"", line 751 in draw File ""/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/graphics/drawing.py"", line 1511 in _draw_multiple File ""/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/graphics/drawing.py"", line 1498 in draw_opaque File ""/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/graphics/drawing.py"", line 1522 in draw_depth File ""/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/graphics/view.py"", line 229 in _draw_scene File ""/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/graphics/view.py"", line 165 in draw File ""/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/updateloop.py"", line 73 in draw_new_frame File ""/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/updateloop.py"", line 138 in _redraw_timer_callback File ""/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/ui/gui.py"", line 293 in event_loop File ""/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py"", line 866 in init File ""/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py"", line 1015 in File ""/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py"", line 87 in _run_code File ""/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py"", line 194 in _run_module_as_main Process: ChimeraX [8799] Path: /Applications/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX Identifier: edu.ucsf.cgl.ChimeraX Version: 1.2.5 (1.2.5.0) Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: ChimeraX [8799] User ID: 733199816 Date/Time: 2021-06-17 21:49:40.101 +0200 OS Version: macOS 11.4 (20F71) Report Version: 12 Anonymous UUID: 5D1C8327-544D-A7E3-354D-2C9A280D416A Time Awake Since Boot: 290000 seconds System Integrity Protection: enabled Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread Exception Type: EXC_CRASH (SIGABRT) Exception Codes: 0x0000000000000000, 0x0000000000000000 Exception Note: EXC_CORPSE_NOTIFY Application Specific Information: abort() called Application Specific Signatures: Graphics kernel error: 0x1be385f9 Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread 0 libsystem_kernel.dylib 0x00007fff204db92e __pthread_kill + 10 1 libsystem_pthread.dylib 0x00007fff2050a5bd pthread_kill + 263 2 libsystem_c.dylib 0x00007fff203eebe5 raise + 26 3 libsystem_platform.dylib 0x00007fff2054fd7d _sigtramp + 29 4 ??? 000000000000000000 0 + 0 5 libsystem_c.dylib 0x00007fff2045f411 abort + 120 6 libGPUSupportMercury.dylib 0x00007fff463d1096 gpusGenerateCrashLog.cold.1 + 95 7 libGPUSupportMercury.dylib 0x00007fff463c821c gpusGenerateCrashLog + 89 8 com.apple.AMDRadeonX4000GLDriver 0x000000012eb46302 gpusKillClientExt + 9 9 libGPUSupportMercury.dylib 0x00007fff463c95e7 gpusSubmitDataBuffers + 164 10 com.apple.AMDRadeonX4000GLDriver 0x000000012eb2092c glrATI_Hwl_SubmitPacketsWithToken + 112 11 com.apple.AMDRadeonX4000GLDriver 0x000000012eb6d8f0 glrdAMD_RenderVertexArray + 2043 12 GLEngine 0x00007fff6be0a3a6 glDrawElementsInstanced_ACC_GL3Exec + 432 13 _ctypes.cpython-38-darwin.so 0x000000010fc3df97 ffi_call_unix64 + 79 14 _ctypes.cpython-38-darwin.so 0x000000010fc3e7f8 ffi_call + 872 15 _ctypes.cpython-38-darwin.so 0x000000010fc3e7f8 ffi_call + 872 16 _ctypes.cpython-38-darwin.so 0x000000010fc3e7f8 ffi_call + 872 17 _ctypes.cpython-38-darwin.so 0x000000010fc3e7f8 ffi_call + 872 18 _ctypes.cpython-38-darwin.so 0x000000010fc3e7f8 ffi_call + 872 19 _ctypes.cpython-38-darwin.so 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509 _ctypes.cpython-38-darwin.so 0x000000010fc3e7f8 ffi_call + 872 510 _ctypes.cpython-38-darwin.so 0x000000010fc3e7f8 ffi_call + 872 511 _ctypes.cpython-38-darwin.so 0x000000010fc3e7f8 ffi_call + 872 Thread 1: 0 libsystem_kernel.dylib 0x00007fff204d7cde __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff2050ae49 _pthread_cond_wait + 1298 2 libopenblas.0.dylib 0x000000010800627b blas_thread_server + 507 3 libsystem_pthread.dylib 0x00007fff2050a8fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20506443 thread_start + 15 Thread 2: 0 libsystem_kernel.dylib 0x00007fff204d7cde __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff2050ae49 _pthread_cond_wait + 1298 2 libopenblas.0.dylib 0x000000010800627b blas_thread_server + 507 3 libsystem_pthread.dylib 0x00007fff2050a8fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20506443 thread_start + 15 Thread 3: 0 libsystem_kernel.dylib 0x00007fff204d7cde __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff2050ae49 _pthread_cond_wait + 1298 2 libopenblas.0.dylib 0x000000010800627b blas_thread_server + 507 3 libsystem_pthread.dylib 0x00007fff2050a8fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20506443 thread_start + 15 Thread 4: 0 libsystem_kernel.dylib 0x00007fff204d7cde __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff2050ae49 _pthread_cond_wait + 1298 2 libopenblas.0.dylib 0x000000010800627b blas_thread_server + 507 3 libsystem_pthread.dylib 0x00007fff2050a8fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20506443 thread_start + 15 Thread 5: 0 libsystem_kernel.dylib 0x00007fff204d7cde __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff2050ae49 _pthread_cond_wait + 1298 2 libopenblas.0.dylib 0x000000010800627b blas_thread_server + 507 3 libsystem_pthread.dylib 0x00007fff2050a8fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20506443 thread_start + 15 Thread 6: 0 libsystem_kernel.dylib 0x00007fff204d7cde __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff2050ae49 _pthread_cond_wait + 1298 2 libopenblas.0.dylib 0x000000010800627b blas_thread_server + 507 3 libsystem_pthread.dylib 0x00007fff2050a8fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20506443 thread_start + 15 Thread 7: 0 libsystem_kernel.dylib 0x00007fff204d7cde __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff2050ae49 _pthread_cond_wait + 1298 2 libopenblas.0.dylib 0x000000010800627b blas_thread_server + 507 3 libsystem_pthread.dylib 0x00007fff2050a8fc _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff20506443 thread_start + 15 Thread 8:: ThreadPoolServiceThread 0 libsystem_kernel.dylib 0x00007fff204de1d2 kevent64 + 10 1 QtWebEngineCore 0x0000000122cbbe6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330 2 QtWebEngineCore 0x0000000122cbbcc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167 3 QtWebEngineCore 0x0000000122c4462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 4 QtWebEngineCore 0x0000000122c087cb base::RunLoop::Run() + 395 5 QtWebEngineCore 0x0000000122c4fa94 base::internal::ServiceThread::Run(base::RunLoop*) + 20 6 QtWebEngineCore 0x0000000122c63a7d base::Thread::ThreadMain() + 413 7 QtWebEngineCore 0x0000000122cace07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff2050a8fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff20506443 thread_start + 15 Thread 9:: ThreadPoolBackgroundWorker 0 libsystem_kernel.dylib 0x00007fff204d52ba mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff204d562c mach_msg + 60 2 QtWebEngineCore 0x0000000122cb1492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000122c59778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x0000000122c5a150 base::internal::WorkerThread::RunWorker() + 1024 5 QtWebEngineCore 0x0000000122c59c44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20 6 QtWebEngineCore 0x0000000122cace07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff2050a8fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff20506443 thread_start + 15 Thread 10:: Chrome_IOThread 0 libsystem_kernel.dylib 0x00007fff204de1d2 kevent64 + 10 1 QtWebEngineCore 0x0000000122cbbe6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330 2 QtWebEngineCore 0x0000000122cbbcc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167 3 QtWebEngineCore 0x0000000122c4462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 4 QtWebEngineCore 0x0000000122c087cb base::RunLoop::Run() + 395 5 QtWebEngineCore 0x0000000126b88f06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102 6 QtWebEngineCore 0x0000000122c63a7d base::Thread::ThreadMain() + 413 7 QtWebEngineCore 0x0000000122cace07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff2050a8fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff20506443 thread_start + 15 Thread 11:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff204d52ba mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff204d562c mach_msg + 60 2 QtWebEngineCore 0x0000000122cb1492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000122cb12cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x0000000122bd91db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x0000000122c4462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x0000000122c087cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x0000000122c63a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x0000000122cace07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff2050a8fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff20506443 thread_start + 15 Thread 12:: CompositorTileWorker1 0 libsystem_kernel.dylib 0x00007fff204d7cde __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff2050ae49 _pthread_cond_wait + 1298 2 QtWebEngineCore 0x0000000122ca8e18 base::ConditionVariable::Wait() + 104 3 QtWebEngineCore 0x0000000123f605f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56 4 QtWebEngineCore 0x0000000122cace07 base::(anonymous namespace)::ThreadFunc(void*) + 87 5 libsystem_pthread.dylib 0x00007fff2050a8fc _pthread_start + 224 6 libsystem_pthread.dylib 0x00007fff20506443 thread_start + 15 Thread 13:: Chrome_InProcGpuThread 0 libsystem_kernel.dylib 0x00007fff204d52ba mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff204d562c mach_msg + 60 2 QtWebEngineCore 0x0000000122cb1492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000122bd920f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223 4 QtWebEngineCore 0x0000000122c4462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 5 QtWebEngineCore 0x0000000122c087cb base::RunLoop::Run() + 395 6 QtWebEngineCore 0x0000000122c63a7d base::Thread::ThreadMain() + 413 7 QtWebEngineCore 0x0000000122cace07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff2050a8fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff20506443 thread_start + 15 Thread 14:: Chrome_ChildIOThread 0 libsystem_kernel.dylib 0x00007fff204de1d2 kevent64 + 10 1 QtWebEngineCore 0x0000000122cbbe6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330 2 QtWebEngineCore 0x0000000122cbbcc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167 3 QtWebEngineCore 0x0000000122c4462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 4 QtWebEngineCore 0x0000000122c087cb base::RunLoop::Run() + 395 5 QtWebEngineCore 0x0000000122c63a7d base::Thread::ThreadMain() + 413 6 QtWebEngineCore 0x0000000122cace07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff2050a8fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff20506443 thread_start + 15 Thread 15:: VizCompositorThread 0 libsystem_kernel.dylib 0x00007fff204d52ba mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff204d562c mach_msg + 60 2 QtWebEngineCore 0x0000000122cb1492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000122cb12cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x0000000122bd91db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x0000000122c4462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x0000000122c087cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x0000000122c63a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x0000000122cace07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff2050a8fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff20506443 thread_start + 15 Thread 16:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff204d52ba mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff204d562c mach_msg + 60 2 QtWebEngineCore 0x0000000122cb1492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000122cb12cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x0000000122bd91db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x0000000122c4462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x0000000122c087cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x0000000122c63a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x0000000122cace07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff2050a8fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff20506443 thread_start + 15 Thread 17:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff204d52ba mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff204d562c mach_msg + 60 2 QtWebEngineCore 0x0000000122cb1492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000122cb12cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x0000000122bd91db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171 5 QtWebEngineCore 0x0000000122c4462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139 6 QtWebEngineCore 0x0000000122c087cb base::RunLoop::Run() + 395 7 QtWebEngineCore 0x0000000122c63a7d base::Thread::ThreadMain() + 413 8 QtWebEngineCore 0x0000000122cace07 base::(anonymous namespace)::ThreadFunc(void*) + 87 9 libsystem_pthread.dylib 0x00007fff2050a8fc _pthread_start + 224 10 libsystem_pthread.dylib 0x00007fff20506443 thread_start + 15 Thread 18:: ThreadPoolSingleThreadForegroundBlocking0 0 libsystem_kernel.dylib 0x00007fff204d52ba mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff204d562c mach_msg + 60 2 QtWebEngineCore 0x0000000122cb1492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000122cb12cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x0000000122c5976a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42 5 QtWebEngineCore 0x0000000122c5a150 base::internal::WorkerThread::RunWorker() + 1024 6 QtWebEngineCore 0x0000000122c59d34 base::internal::WorkerThread::RunDedicatedWorker() + 20 7 QtWebEngineCore 0x0000000122cace07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff2050a8fc 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mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff204d562c mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff20603b5f __CFRunLoopServiceMachPort + 316 3 com.apple.CoreFoundation 0x00007fff2060223f __CFRunLoopRun + 1328 4 com.apple.CoreFoundation 0x00007fff2060164c CFRunLoopRunSpecific + 563 5 com.apple.AppKit 0x00007fff22f8868a _NSEventThread + 124 6 libsystem_pthread.dylib 0x00007fff2050a8fc _pthread_start + 224 7 libsystem_pthread.dylib 0x00007fff20506443 thread_start + 15 Thread 22:: ThreadPoolSingleThreadSharedBackgroundBlocking1 0 libsystem_kernel.dylib 0x00007fff204d52ba mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff204d562c mach_msg + 60 2 QtWebEngineCore 0x0000000122cb1492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000122cb12cf base::WaitableEvent::Wait() + 31 4 QtWebEngineCore 0x0000000122c5976a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42 5 QtWebEngineCore 0x0000000122c59e3d base::internal::WorkerThread::RunWorker() + 237 6 QtWebEngineCore 0x0000000122c59c74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20 7 QtWebEngineCore 0x0000000122cace07 base::(anonymous namespace)::ThreadFunc(void*) + 87 8 libsystem_pthread.dylib 0x00007fff2050a8fc _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff20506443 thread_start + 15 Thread 23:: ThreadPoolForegroundWorker 0 libsystem_kernel.dylib 0x00007fff204d52ba mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff204d562c mach_msg + 60 2 QtWebEngineCore 0x0000000122cb1492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000122c59778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x0000000122c5a150 base::internal::WorkerThread::RunWorker() + 1024 5 QtWebEngineCore 0x0000000122c59cd4 base::internal::WorkerThread::RunPooledWorker() + 20 6 QtWebEngineCore 0x0000000122cace07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff2050a8fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff20506443 thread_start + 15 Thread 24: 0 libsystem_pthread.dylib 0x00007fff20506420 start_wqthread + 0 Thread 25:: ThreadPoolForegroundWorker 0 libsystem_kernel.dylib 0x00007fff204d52ba mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff204d562c mach_msg + 60 2 QtWebEngineCore 0x0000000122cb1492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434 3 QtWebEngineCore 0x0000000122c59778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56 4 QtWebEngineCore 0x0000000122c5a150 base::internal::WorkerThread::RunWorker() + 1024 5 QtWebEngineCore 0x0000000122c59cd4 base::internal::WorkerThread::RunPooledWorker() + 20 6 QtWebEngineCore 0x0000000122cace07 base::(anonymous namespace)::ThreadFunc(void*) + 87 7 libsystem_pthread.dylib 0x00007fff2050a8fc _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff20506443 thread_start + 15 Thread 26: 0 libsystem_pthread.dylib 0x00007fff20506420 start_wqthread + 0 Thread 27: 0 libsystem_pthread.dylib 0x00007fff20506420 start_wqthread + 0 Thread 28: 0 libsystem_pthread.dylib 0x00007fff20506420 start_wqthread + 0 Thread 29: 0 libsystem_pthread.dylib 0x00007fff20506420 start_wqthread + 0 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x0000000111309e00 rcx: 0x00007fc968047a58 rdx: 0x0000000000000000 rdi: 0x0000000000000103 rsi: 0x0000000000000006 rbp: 0x00007fc968047a80 rsp: 0x00007fc968047a58 r8: 0x00007fc968047f48 r9: 0x531894ee373080a9 r10: 0x0000000111309e00 r11: 0x0000000000000246 r12: 0x0000000000000103 r13: 0x0000000000000000 r14: 0x0000000000000006 r15: 0x0000000000000016 rip: 0x00007fff204db92e rfl: 0x0000000000000246 cr2: 0x00007fc968047f48 Logical CPU: 0 Error Code: 0x02000148 Trap Number: 133 Thread 0 instruction stream not available. Thread 0 last branch register state not available. 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0x7fff3e9cdfff com.apple.AnnotationKit (1.0 - 383.6) /System/Library/PrivateFrameworks/AnnotationKit.framework/Versions/A/AnnotationKit 0x7fff3e9ce000 - 0x7fff3ee6efff com.apple.QuartzComposer (5.1 - 383) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzComposer.framework/Versions/A/QuartzComposer 0x7fff3ee6f000 - 0x7fff3ef57fff com.apple.PDFKit (1.0 - 950.40.3) /System/Library/Frameworks/PDFKit.framework/Versions/A/PDFKit 0x7fff3fc9a000 - 0x7fff3fd17fff com.apple.TextInput (1.0 - 1.0) /System/Library/PrivateFrameworks/TextInput.framework/Versions/A/TextInput 0x7fff40e4d000 - 0x7fff40e56fff com.apple.IOAccelMemoryInfo (1.0 - 1) /System/Library/PrivateFrameworks/IOAccelMemoryInfo.framework/Versions/A/IOAccelMemoryInfo 0x7fff40eb1000 - 0x7fff40eb4fff com.apple.quartzframework (1.5 - 25) /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz 0x7fff412d9000 - 0x7fff412f7fff libCGInterfaces.dylib (544.4) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib 0x7fff43882000 - 0x7fff43af5fff com.apple.RawCamera.bundle (9.10.0 - 1450.3) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera 0x7fff4435e000 - 0x7fff44362fff com.apple.DAAPKit (1.0 - 1) /System/Library/PrivateFrameworks/DAAPKit.framework/Versions/A/DAAPKit 0x7fff45cd7000 - 0x7fff45cdafff libpmenergy.dylib (227.100.2) /usr/lib/libpmenergy.dylib 0x7fff463c6000 - 0x7fff463d1fff libGPUSupportMercury.dylib (18.5.9) /System/Library/PrivateFrameworks/GPUSupport.framework/Versions/A/Libraries/libGPUSupportMercury.dylib 0x7fff479fc000 - 0x7fff47a3cfff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics 0x7fff4828c000 - 0x7fff482a7fff com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics 0x7fff51653000 - 0x7fff51680fff com.apple.HelpData (2.3 - 201) /System/Library/PrivateFrameworks/HelpData.framework/Versions/A/HelpData 0x7fff51681000 - 0x7fff5169bfff com.apple.shortcut (2.16 - 118) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut 0x7fff5169c000 - 0x7fff5173bfff com.apple.Symbolication (12.5 - 64544.70.1) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication 0x7fff5192a000 - 0x7fff5192dfff libpmsample.dylib (227.100.2) /usr/lib/libpmsample.dylib 0x7fff53fc0000 - 0x7fff53ff6fff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit 0x7fff555ea000 - 0x7fff555edfff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback 0x7fff5e1a6000 - 0x7fff5ec01fff libSC.dylib (4.5.14) /System/Library/Extensions/AMDShared.bundle/Contents/PlugIns/libSC.dylib 0x7fff696cc000 - 0x7fff696d0fff libmetal_timestamp.dylib (31001.189) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib 0x7fff6bb17000 - 0x7fff6bb1dfff libCoreFSCache.dylib (200.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib 0x7fff6bb1e000 - 0x7fff6bb22fff libCoreVMClient.dylib (200.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib 0x7fff6bb23000 - 0x7fff6bb32fff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL 0x7fff6bb33000 - 0x7fff6bb35fff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib 0x7fff6bb36000 - 0x7fff6bb3efff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib 0x7fff6bb3f000 - 0x7fff6bb72fff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib 0x7fff6bb73000 - 0x7fff6bbaffff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib 0x7fff6bbb0000 - 0x7fff6bd43fff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib 0x7fff6bd44000 - 0x7fff6bd4efff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib 0x7fff6bd4f000 - 0x7fff6beccfff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine 0x7fff6becd000 - 0x7fff6bef5fff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat 0x7fff6d18e000 - 0x7fff6d1e6fff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL 0x7fff6dd10000 - 0x7fff6df2bfff com.apple.AMDMTLBronzeDriver (4.5.14 - 4.0.5) /System/Library/Extensions/AMDMTLBronzeDriver.bundle/Contents/MacOS/AMDMTLBronzeDriver 0x7fff6e090000 - 0x7fff6e0dffff ATIRadeonX4000SCLib.dylib (4.5.14) /System/Library/Extensions/AMDRadeonX4000GLDriver.bundle/Contents/MacOS/ATIRadeonX4000SCLib.dylib 0x7fff6e290000 - 0x7fff6e297fff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL 0x7fff6e298000 - 0x7fff6e37ffff com.apple.audio.AVFAudio (1.0 - 477.87) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio 0x7fff6f8fd000 - 0x7fff6f90ffff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging 0x7fff73bdd000 - 0x7fff73be8fff com.apple.SymptomAnalytics (1.0 - 1431.120.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics 0x7fff73dfe000 - 0x7fff73e16fff com.apple.SymptomPresentationFeed (1.0 - 1431.120.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed 0x7fff7798c000 - 0x7fff77993fff libRosetta.dylib (203.46) /usr/lib/libRosetta.dylib External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 0 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=1.1G resident=0K(0%) swapped_out_or_unallocated=1.1G(100%) Writable regions: Total=27.5G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=27.5G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 512K 4 Activity Tracing 256K 1 CG backing stores 6840K 12 CG image 1660K 33 CG raster data 1364K 2 CoreAnimation 5024K 27 CoreGraphics 16K 3 CoreUI image data 4632K 41 Foundation 36K 2 Kernel Alloc Once 8K 1 MALLOC 21.8G 1328 MALLOC guard page 48K 10 MALLOC_MEDIUM (reserved) 1.3G 16 reserved VM address space (unallocated) MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated) Mach message 24K 3 OpenGL GLSL 384K 4 STACK GUARD 116K 29 Stack 142.7M 30 Stack Guard 56.0M 1 VM_ALLOCATE 3.7G 2479 VM_ALLOCATE (reserved) 160.0M 1 reserved VM address space (unallocated) __DATA 42.9M 590 __DATA_CONST 22.1M 269 __DATA_DIRTY 1273K 176 __FONT_DATA 4K 1 __GLSLBUILTINS 5176K 1 __LINKEDIT 591.3M 137 __OBJC_RO 70.2M 1 __OBJC_RW 2480K 2 __TEXT 574.8M 566 __UNICODE 588K 1 mapped file 579.6M 53 shared memory 2952K 22 =========== ======= ======= TOTAL 29.4G 5847 TOTAL, minus reserved VM space 27.6G 5847 Log: UCSF ChimeraX version: 1.2.5 (2021-05-24) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 ATI-4.5.14 OpenGL renderer: AMD Radeon Pro 580X OpenGL Engine OpenGL vendor: ATI Technologies Inc.Hardware: Hardware Overview: Model Name: iMac Model Identifier: iMac19,1 Processor Name: 8-Core Intel Core i9 Processor Speed: 3,6 GHz Number of Processors: 1 Total Number of Cores: 8 L2 Cache (per Core): 256 KB L3 Cache: 16 MB Hyper-Threading Technology: Enabled Memory: 64 GB System Firmware Version: 1554.120.15.0.0 SMC Version (system): 2.46f13 Software: System Software Overview: System Version: macOS 11.4 (20F71) Kernel Version: Darwin 20.5.0 Time since boot: 3 days 10:55 Graphics/Displays: Radeon Pro 580X: Chipset Model: Radeon Pro 580X Type: GPU Bus: PCIe PCIe Lane Width: x16 VRAM (Total): 8 GB Vendor: AMD (0x1002) Device ID: 0x67df Revision ID: 0x00c0 ROM Revision: 113-D0008A-042 VBIOS Version: 113-D0008A1X-009 EFI Driver Version: 01.B1.042 Metal Family: Supported, Metal GPUFamily macOS 2 Displays: iMac: Display Type: Built-In Retina LCD Resolution: Retina 5K (5120 x 2880) Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal V3D231 Series: Resolution: 1920 x 1080 (1080p FHD - Full High Definition) UI Looks like: 1920 x 1080 @ 60.00Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: SNL114300095 Mirror: Off Online: Yes Rotation: Supported Automatically Adjust Brightness: Yes Connection Type: Thunderbolt/DisplayPort Locale: (None, 'UTF-8') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.2 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2020.12.5 cftime: 1.5.0 chardet: 3.0.4 ChimeraX-AddCharge: 1.0.1 ChimeraX-AddH: 2.1.6 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.13.2 ChimeraX-AtomicLibrary: 3.1.3 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 1.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.5.2 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.1 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.1 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.2.1 ChimeraX-CommandLine: 1.1.4 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.2.5 ChimeraX-CoreFormats: 1.0 ChimeraX-coulombic: 1.1.1 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.1 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.3 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.0 ChimeraX-Hbonds: 2.1 ChimeraX-Help: 1.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.0 ChimeraX-ImageFormats: 1.1 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-Label: 1.0 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.0.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.0 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 1.2.1 ChimeraX-MDcrds: 2.2 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.3 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.0.1 ChimeraX-ModelPanel: 1.0.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.1 ChimeraX-OpenCommand: 1.5 ChimeraX-PDB: 2.4.1 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.1 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.0.1 ChimeraX-ReadPbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.4 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SeqView: 2.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.0 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.0.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.3.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.0.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.7.6 ChimeraX-uniprot: 2.1 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.3 comtypes: 1.1.7 cxservices: 1.0 cycler: 0.10.0 Cython: 0.29.21 decorator: 5.0.9 distlib: 0.3.1 docutils: 0.16 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 2.10.0 html2text: 2020.1.16 idna: 2.10 ihm: 0.17 imagecodecs: 2020.5.30 imagesize: 1.2.0 ipykernel: 5.3.4 ipython: 7.18.1 ipython-genutils: 0.2.0 jedi: 0.17.2 Jinja2: 2.11.2 jupyter-client: 6.1.7 jupyter-core: 4.7.1 kiwisolver: 1.3.1 line-profiler: 2.1.2 lxml: 4.6.2 lz4: 3.1.0 MarkupSafe: 2.0.1 matplotlib: 3.3.2 matplotlib-inline: 0.1.2 msgpack: 1.0.0 netCDF4: 1.5.4 networkx: 2.5 numexpr: 2.7.3 numpy: 1.19.2 numpydoc: 1.1.0 openvr: 1.14.1501 packaging: 20.9 ParmEd: 3.2.0 parso: 0.7.1 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 7.2.0 pip: 21.0.1 pkginfo: 1.5.0.1 prompt-toolkit: 3.0.18 psutil: 5.7.2 ptyprocess: 0.7.0 pycollada: 0.7.1 pydicom: 2.0.0 Pygments: 2.7.1 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.1 pytz: 2021.1 pyzmq: 22.0.3 qtconsole: 4.7.7 QtPy: 1.9.0 RandomWords: 0.3.0 requests: 2.24.0 scipy: 1.5.2 setuptools: 50.3.2 sfftk-rw: 0.6.7.dev1 six: 1.15.0 snowballstemmer: 2.1.0 sortedcontainers: 2.2.2 Sphinx: 3.2.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2020.9.3 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.0.5 urllib3: 1.25.11 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.36.0 wheel-filename: 1.3.0 }}} " defect closed normal Graphics nonchimerax all ChimeraX