id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 4618 Graphics crash, macOS 11.2.3, Radeon Pro 580 keiichi@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Darwin-20.3.0-x86_64-i386-64bit ChimeraX Version: 1.1.1 (2020-10-07 08:32:49 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Process: ChimeraX [15439] Path: /Applications/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX Identifier: edu.ucsf.cgl.ChimeraX Version: 1.1.1 (1.1.1.0) Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: ChimeraX [15439] User ID: 501 Date/Time: 2021-05-10 20:16:06.703 +0900 OS Version: macOS 11.2.3 (20D91) Report Version: 12 Anonymous UUID: BD941B48-781E-3694-3E9C-D166E7E3263B Sleep/Wake UUID: C52749A4-8596-4A35-9D45-24E9B8FDE168 Time Awake Since Boot: 81000 seconds Time Since Wake: 26000 seconds System Integrity Protection: enabled Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread Exception Type: EXC_CRASH (SIGABRT) Exception Codes: 0x0000000000000000, 0x0000000000000000 Exception Note: EXC_CORPSE_NOTIFY Application Specific Information: abort() called Application Specific Signatures: Graphics kernel error: 0xfffffffc Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread 0 libsystem_kernel.dylib 0x00007fff205d0462 __pthread_kill + 10 1 libsystem_pthread.dylib 0x00007fff205fe610 pthread_kill + 263 2 libsystem_c.dylib 0x00007fff204e0ba3 raise + 26 3 libsystem_platform.dylib 0x00007fff20642d7d _sigtramp + 29 4 ??? 000000000000000000 0 + 0 5 libsystem_c.dylib 0x00007fff20551720 abort + 120 6 libGPUSupportMercury.dylib 0x00007fff46f130a8 gpusGenerateCrashLog.cold.1 + 95 7 libGPUSupportMercury.dylib 0x00007fff46f0a20d gpusGenerateCrashLog + 89 8 com.apple.AMDRadeonX4000GLDriver 0x0000000121ec4622 gpusKillClientExt + 9 9 libGPUSupportMercury.dylib 0x00007fff46f0b5cf gpusSubmitDataBuffers + 164 10 com.apple.AMDRadeonX4000GLDriver 0x0000000121e9ee87 glrATI_Hwl_SubmitPacketsWithToken + 91 11 QtQuickWidgets 0x000000011ea194dd 0x11ea14000 + 21725 12 QtWebEngineWidgets 0x0000000117624bfe 0x11760a000 + 109566 13 QtWidgets 0x00000001140ee66f QWidget::event(QEvent*) + 1135 14 QtQuickWidgets 0x000000011ea1d2ce QQuickWidget::event(QEvent*) + 782 15 QtWebEngineWidgets 0x00000001176250e7 0x11760a000 + 110823 16 QtWidgets 0x00000001140b267d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269 17 QtWidgets 0x00000001140b3a82 QApplication::notify(QObject*, QEvent*) + 594 18 QtWidgets.so 0x0000000113c723ca sipQApplication::notify(QObject*, QEvent*) + 234 19 QtCore 0x0000000114d9e324 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212 20 QtWidgets 0x00000001140e66ec QWidgetPrivate::sendPendingMoveAndResizeEvents(bool, bool) + 268 21 QtWidgets 0x00000001140ed287 QWidgetPrivate::show_helper() + 39 22 QtWidgets 0x00000001140ed647 QWidgetPrivate::showChildren(bool) + 359 23 QtWidgets 0x00000001140ed2a9 QWidgetPrivate::show_helper() + 73 24 QtWidgets 0x00000001140ee043 QWidgetPrivate::setVisible(bool) + 819 25 QtWebEngineWidgets.so 0x00000001175c5f8e sipQWebEngineView::setVisible(bool) + 110 26 QtWidgets 0x00000001140ed640 QWidgetPrivate::showChildren(bool) + 352 27 QtWidgets 0x00000001140ed2a9 QWidgetPrivate::show_helper() + 73 28 QtWidgets 0x00000001140ee043 QWidgetPrivate::setVisible(bool) + 819 29 QtWidgets.so 0x0000000113c886ee sipQWidget::setVisible(bool) + 110 30 QtWidgets 0x00000001140d528f QStackedLayout::setCurrentIndex(int) + 415 31 QtWidgets.so 0x0000000113cc082f meth_QStackedWidget_setCurrentWidget(_object*, _object*) + 95 32 org.python.python 0x0000000107053382 _PyMethodDef_RawFastCallKeywords + 226 33 org.python.python 0x00000001070528b9 _PyCFunction_FastCallKeywords + 41 34 org.python.python 0x0000000107127b60 call_function + 656 35 org.python.python 0x0000000107124817 _PyEval_EvalFrameDefault + 26567 36 org.python.python 0x0000000107052d61 function_code_fastcall + 177 37 org.python.python 0x00000001070546eb object_vacall + 619 38 org.python.python 0x00000001070548f0 PyObject_CallFunctionObjArgs + 144 39 org.python.python 0x000000010705ad96 property_descr_set + 38 40 org.python.python 0x00000001070904af _PyObject_GenericSetAttrWithDict + 159 41 org.python.python 0x000000010708f93c PyObject_SetAttr + 108 42 org.python.python 0x0000000107121625 _PyEval_EvalFrameDefault + 13781 43 org.python.python 0x0000000107128a2c _PyEval_EvalCodeWithName + 3276 44 org.python.python 0x0000000107052879 _PyFunction_FastCallKeywords + 217 45 org.python.python 0x0000000107127bd4 call_function + 772 46 org.python.python 0x0000000107124817 _PyEval_EvalFrameDefault + 26567 47 org.python.python 0x0000000107128a2c _PyEval_EvalCodeWithName + 3276 48 org.python.python 0x0000000107052879 _PyFunction_FastCallKeywords + 217 49 org.python.python 0x0000000107127bd4 call_function + 772 50 org.python.python 0x00000001071248ae _PyEval_EvalFrameDefault + 26718 51 org.python.python 0x0000000107128a2c _PyEval_EvalCodeWithName + 3276 52 org.python.python 0x000000010711dfb0 PyEval_EvalCode + 48 53 org.python.python 0x000000010711b547 builtin_exec + 583 54 org.python.python 0x000000010705352d _PyMethodDef_RawFastCallKeywords + 653 55 org.python.python 0x00000001070528b9 _PyCFunction_FastCallKeywords + 41 56 org.python.python 0x0000000107127b60 call_function + 656 57 org.python.python 0x00000001071248ae _PyEval_EvalFrameDefault + 26718 58 org.python.python 0x0000000107128a2c _PyEval_EvalCodeWithName + 3276 59 org.python.python 0x0000000107052879 _PyFunction_FastCallKeywords + 217 60 org.python.python 0x0000000107127bd4 call_function + 772 61 org.python.python 0x00000001071248ae _PyEval_EvalFrameDefault + 26718 62 org.python.python 0x0000000107128a2c _PyEval_EvalCodeWithName + 3276 63 org.python.python 0x0000000107052377 _PyFunction_FastCallDict + 455 64 org.python.python 0x0000000107182af3 pymain_run_module + 147 65 org.python.python 0x0000000107181bdc pymain_main + 5900 66 org.python.python 0x00000001071804c3 Py_Main + 51 67 edu.ucsf.cgl.ChimeraX 0x0000000107021dc8 main + 120 68 libdyld.dylib 0x00007fff20619621 start + 1 Thread 1: 0 libsystem_kernel.dylib 0x00007fff205cc8e2 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff205fee6f _pthread_cond_wait + 1254 2 libopenblasp-r0.3.7.dylib 0x0000000108953c3b blas_thread_server + 619 3 libsystem_pthread.dylib 0x00007fff205fe950 _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff205fa47b thread_start + 15 Thread 2: 0 libsystem_kernel.dylib 0x00007fff205cc8e2 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff205fee6f _pthread_cond_wait + 1254 2 libopenblasp-r0.3.7.dylib 0x0000000108953c3b blas_thread_server + 619 3 libsystem_pthread.dylib 0x00007fff205fe950 _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff205fa47b thread_start + 15 Thread 3: 0 libsystem_kernel.dylib 0x00007fff205cc8e2 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff205fee6f _pthread_cond_wait + 1254 2 libopenblasp-r0.3.7.dylib 0x0000000108953c3b blas_thread_server + 619 3 libsystem_pthread.dylib 0x00007fff205fe950 _pthread_start + 224 4 libsystem_pthread.dylib 0x00007fff205fa47b thread_start + 15 Thread 4: 0 libsystem_pthread.dylib 0x00007fff205fa458 start_wqthread + 0 Thread 5: 0 libsystem_pthread.dylib 0x00007fff205fa458 start_wqthread + 0 Thread 6: 0 libsystem_pthread.dylib 0x00007fff205fa458 start_wqthread + 0 Thread 7: 0 libsystem_pthread.dylib 0x00007fff205fa458 start_wqthread + 0 Thread 8: 0 libsystem_pthread.dylib 0x00007fff205fa458 start_wqthread + 0 Thread 9:: com.apple.NSEventThread 0 libsystem_kernel.dylib 0x00007fff205c9e7e mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff205ca1f0 mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff206f6bf7 __CFRunLoopServiceMachPort + 316 3 com.apple.CoreFoundation 0x00007fff206f52ca __CFRunLoopRun + 1315 4 com.apple.CoreFoundation 0x00007fff206f46ce CFRunLoopRunSpecific + 563 5 com.apple.AppKit 0x00007fff2309a7c6 _NSEventThread + 124 6 libsystem_pthread.dylib 0x00007fff205fe950 _pthread_start + 224 7 libsystem_pthread.dylib 0x00007fff205fa47b thread_start + 15 Thread 10:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff205c9e7e mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff205ca1f0 mach_msg + 60 2 QtWebEngineCore 0x00000001197f432d 0x117652000 + 35267373 3 QtWebEngineCore 0x00000001197a8052 0x117652000 + 34955346 4 QtWebEngineCore 0x00000001197d1085 0x117652000 + 35123333 5 QtWebEngineCore 0x00000001198239bc 0x117652000 + 35461564 6 QtWebEngineCore 0x0000000119863717 0x117652000 + 35723031 7 libsystem_pthread.dylib 0x00007fff205fe950 _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff205fa47b thread_start + 15 Thread 11:: DnsConfigService 0 libsystem_kernel.dylib 0x00007fff205ce7e2 kevent + 10 1 QtWebEngineCore 0x0000000119ab59a9 0x117652000 + 38156713 2 QtWebEngineCore 0x0000000119ab2cbd 0x117652000 + 38145213 3 QtWebEngineCore 0x0000000119869cdc 0x117652000 + 35749084 4 QtWebEngineCore 0x00000001197d1085 0x117652000 + 35123333 5 QtWebEngineCore 0x00000001198239bc 0x117652000 + 35461564 6 QtWebEngineCore 0x0000000119863717 0x117652000 + 35723031 7 libsystem_pthread.dylib 0x00007fff205fe950 _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff205fa47b thread_start + 15 Thread 12:: TaskSchedulerServiceThread 0 libsystem_kernel.dylib 0x00007fff205ce7e2 kevent + 10 1 QtWebEngineCore 0x0000000119ab59a9 0x117652000 + 38156713 2 QtWebEngineCore 0x0000000119ab2cbd 0x117652000 + 38145213 3 QtWebEngineCore 0x0000000119869cc4 0x117652000 + 35749060 4 QtWebEngineCore 0x00000001197d1085 0x117652000 + 35123333 5 QtWebEngineCore 0x0000000119812a74 0x117652000 + 35392116 6 QtWebEngineCore 0x00000001198239bc 0x117652000 + 35461564 7 QtWebEngineCore 0x0000000119863717 0x117652000 + 35723031 8 libsystem_pthread.dylib 0x00007fff205fe950 _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff205fa47b thread_start + 15 Thread 13:: TaskSchedulerForegroundWorker 0 libsystem_kernel.dylib 0x00007fff205c9e7e mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff205ca1f0 mach_msg + 60 2 QtWebEngineCore 0x00000001197f432d 0x117652000 + 35267373 3 QtWebEngineCore 0x00000001197f4421 0x117652000 + 35267617 4 QtWebEngineCore 0x000000011980bd28 0x117652000 + 35364136 5 QtWebEngineCore 0x000000011980c3bf 0x117652000 + 35365823 6 QtWebEngineCore 0x000000011980c2c4 0x117652000 + 35365572 7 QtWebEngineCore 0x0000000119863717 0x117652000 + 35723031 8 libsystem_pthread.dylib 0x00007fff205fe950 _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff205fa47b thread_start + 15 Thread 14:: TaskSchedulerForegroundBlockingWorker 0 libsystem_kernel.dylib 0x00007fff205c9e7e mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff205ca1f0 mach_msg + 60 2 QtWebEngineCore 0x00000001197f432d 0x117652000 + 35267373 3 QtWebEngineCore 0x00000001197f4421 0x117652000 + 35267617 4 QtWebEngineCore 0x000000011980bd28 0x117652000 + 35364136 5 QtWebEngineCore 0x000000011980c65b 0x117652000 + 35366491 6 QtWebEngineCore 0x000000011980c2c4 0x117652000 + 35365572 7 QtWebEngineCore 0x0000000119863717 0x117652000 + 35723031 8 libsystem_pthread.dylib 0x00007fff205fe950 _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff205fa47b thread_start + 15 Thread 15:: TaskSchedulerForegroundBlockingWorker 0 libsystem_kernel.dylib 0x00007fff205c9e7e mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff205ca1f0 mach_msg + 60 2 QtWebEngineCore 0x00000001197f432d 0x117652000 + 35267373 3 QtWebEngineCore 0x00000001197f4421 0x117652000 + 35267617 4 QtWebEngineCore 0x000000011980bd28 0x117652000 + 35364136 5 QtWebEngineCore 0x000000011980c65b 0x117652000 + 35366491 6 QtWebEngineCore 0x000000011980c2c4 0x117652000 + 35365572 7 QtWebEngineCore 0x0000000119863717 0x117652000 + 35723031 8 libsystem_pthread.dylib 0x00007fff205fe950 _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff205fa47b thread_start + 15 Thread 16:: TaskSchedulerForegroundBlockingWorker 0 libsystem_kernel.dylib 0x00007fff205c9e7e mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff205ca1f0 mach_msg + 60 2 QtWebEngineCore 0x00000001197f432d 0x117652000 + 35267373 3 QtWebEngineCore 0x00000001197f4421 0x117652000 + 35267617 4 QtWebEngineCore 0x000000011980bd28 0x117652000 + 35364136 5 QtWebEngineCore 0x000000011980c3bf 0x117652000 + 35365823 6 QtWebEngineCore 0x000000011980c2c4 0x117652000 + 35365572 7 QtWebEngineCore 0x0000000119863717 0x117652000 + 35723031 8 libsystem_pthread.dylib 0x00007fff205fe950 _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff205fa47b thread_start + 15 Thread 17:: TaskSchedulerBackgroundWorker 0 libsystem_kernel.dylib 0x00007fff205c9e7e mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff205ca1f0 mach_msg + 60 2 QtWebEngineCore 0x00000001197f432d 0x117652000 + 35267373 3 QtWebEngineCore 0x00000001197f4421 0x117652000 + 35267617 4 QtWebEngineCore 0x000000011980bd28 0x117652000 + 35364136 5 QtWebEngineCore 0x000000011980c3bf 0x117652000 + 35365823 6 QtWebEngineCore 0x000000011980c234 0x117652000 + 35365428 7 QtWebEngineCore 0x0000000119863717 0x117652000 + 35723031 8 libsystem_pthread.dylib 0x00007fff205fe950 _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff205fa47b thread_start + 15 Thread 18:: TaskSchedulerBackgroundBlockingWorker 0 libsystem_kernel.dylib 0x00007fff205c9e7e mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff205ca1f0 mach_msg + 60 2 QtWebEngineCore 0x00000001197f432d 0x117652000 + 35267373 3 QtWebEngineCore 0x00000001197f4421 0x117652000 + 35267617 4 QtWebEngineCore 0x000000011980bd28 0x117652000 + 35364136 5 QtWebEngineCore 0x000000011980c3bf 0x117652000 + 35365823 6 QtWebEngineCore 0x000000011980c234 0x117652000 + 35365428 7 QtWebEngineCore 0x0000000119863717 0x117652000 + 35723031 8 libsystem_pthread.dylib 0x00007fff205fe950 _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff205fa47b thread_start + 15 Thread 19:: Chrome_IOThread 0 libsystem_kernel.dylib 0x00007fff205ce7e2 kevent + 10 1 QtWebEngineCore 0x0000000119ab59a9 0x117652000 + 38156713 2 QtWebEngineCore 0x0000000119ab2cbd 0x117652000 + 38145213 3 QtWebEngineCore 0x0000000119869cc4 0x117652000 + 35749060 4 QtWebEngineCore 0x00000001197d1085 0x117652000 + 35123333 5 QtWebEngineCore 0x000000011913ffe4 0x117652000 + 28237796 6 QtWebEngineCore 0x00000001198239bc 0x117652000 + 35461564 7 QtWebEngineCore 0x0000000119863717 0x117652000 + 35723031 8 libsystem_pthread.dylib 0x00007fff205fe950 _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff205fa47b thread_start + 15 Thread 20:: TaskSchedulerSingleThreadSharedBackgroundBlocking0 0 libsystem_kernel.dylib 0x00007fff205c9e7e mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff205ca1f0 mach_msg + 60 2 QtWebEngineCore 0x00000001197f432d 0x117652000 + 35267373 3 QtWebEngineCore 0x00000001197f422f 0x117652000 + 35267119 4 QtWebEngineCore 0x000000011980bd1a 0x117652000 + 35364122 5 QtWebEngineCore 0x000000011980c3bf 0x117652000 + 35365823 6 QtWebEngineCore 0x000000011980c264 0x117652000 + 35365476 7 QtWebEngineCore 0x0000000119863717 0x117652000 + 35723031 8 libsystem_pthread.dylib 0x00007fff205fe950 _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff205fa47b thread_start + 15 Thread 21:: CompositorTileWorker1/55299 0 libsystem_kernel.dylib 0x00007fff205cc8e2 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff205fee6f _pthread_cond_wait + 1254 2 QtWebEngineCore 0x0000000119861fa8 0x117652000 + 35717032 3 QtWebEngineCore 0x000000011a7e84c8 0x117652000 + 51995848 4 QtWebEngineCore 0x0000000119822694 0x117652000 + 35456660 5 QtWebEngineCore 0x0000000119863717 0x117652000 + 35723031 6 libsystem_pthread.dylib 0x00007fff205fe950 _pthread_start + 224 7 libsystem_pthread.dylib 0x00007fff205fa47b thread_start + 15 Thread 22:: AudioThread 0 libsystem_kernel.dylib 0x00007fff205c9e7e mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff205ca1f0 mach_msg + 60 2 QtWebEngineCore 0x00000001197f432d 0x117652000 + 35267373 3 QtWebEngineCore 0x00000001197f422f 0x117652000 + 35267119 4 QtWebEngineCore 0x00000001197a805d 0x117652000 + 34955357 5 QtWebEngineCore 0x00000001197d1085 0x117652000 + 35123333 6 QtWebEngineCore 0x00000001198239bc 0x117652000 + 35461564 7 QtWebEngineCore 0x0000000119863717 0x117652000 + 35723031 8 libsystem_pthread.dylib 0x00007fff205fe950 _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff205fa47b thread_start + 15 Thread 23:: Chrome_InProcGpuThread 0 libsystem_kernel.dylib 0x00007fff205c9e7e mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff205ca1f0 mach_msg + 60 2 QtWebEngineCore 0x00000001197f432d 0x117652000 + 35267373 3 QtWebEngineCore 0x00000001197f422f 0x117652000 + 35267119 4 QtWebEngineCore 0x00000001197a805d 0x117652000 + 34955357 5 QtWebEngineCore 0x00000001197d1085 0x117652000 + 35123333 6 QtWebEngineCore 0x00000001198239bc 0x117652000 + 35461564 7 QtWebEngineCore 0x0000000119863717 0x117652000 + 35723031 8 libsystem_pthread.dylib 0x00007fff205fe950 _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff205fa47b thread_start + 15 Thread 24:: Chrome_ChildIOThread 0 libsystem_kernel.dylib 0x00007fff205ce7e2 kevent + 10 1 QtWebEngineCore 0x0000000119ab59a9 0x117652000 + 38156713 2 QtWebEngineCore 0x0000000119ab2cbd 0x117652000 + 38145213 3 QtWebEngineCore 0x0000000119869cdc 0x117652000 + 35749084 4 QtWebEngineCore 0x00000001197d1085 0x117652000 + 35123333 5 QtWebEngineCore 0x00000001198239bc 0x117652000 + 35461564 6 QtWebEngineCore 0x0000000119863717 0x117652000 + 35723031 7 libsystem_pthread.dylib 0x00007fff205fe950 _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff205fa47b thread_start + 15 Thread 25:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff205c9e7e mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff205ca1f0 mach_msg + 60 2 QtWebEngineCore 0x00000001197f432d 0x117652000 + 35267373 3 QtWebEngineCore 0x00000001197a8052 0x117652000 + 34955346 4 QtWebEngineCore 0x00000001197d1085 0x117652000 + 35123333 5 QtWebEngineCore 0x00000001198239bc 0x117652000 + 35461564 6 QtWebEngineCore 0x0000000119863717 0x117652000 + 35723031 7 libsystem_pthread.dylib 0x00007fff205fe950 _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff205fa47b thread_start + 15 Thread 26: 0 libsystem_kernel.dylib 0x00007fff205c9ed2 semaphore_timedwait_trap + 10 1 libdispatch.dylib 0x00007fff20453cda _dispatch_sema4_timedwait + 76 2 libdispatch.dylib 0x00007fff20454106 _dispatch_semaphore_wait_slow + 58 3 libdispatch.dylib 0x00007fff20462695 _dispatch_worker_thread + 284 4 libsystem_pthread.dylib 0x00007fff205fe950 _pthread_start + 224 5 libsystem_pthread.dylib 0x00007fff205fa47b thread_start + 15 Thread 27:: TaskSchedulerSingleThreadForegroundBlocking1 0 libsystem_kernel.dylib 0x00007fff205c9e7e mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff205ca1f0 mach_msg + 60 2 QtWebEngineCore 0x00000001197f432d 0x117652000 + 35267373 3 QtWebEngineCore 0x00000001197f422f 0x117652000 + 35267119 4 QtWebEngineCore 0x000000011980bd1a 0x117652000 + 35364122 5 QtWebEngineCore 0x000000011980c65b 0x117652000 + 35366491 6 QtWebEngineCore 0x000000011980c324 0x117652000 + 35365668 7 QtWebEngineCore 0x0000000119863717 0x117652000 + 35723031 8 libsystem_pthread.dylib 0x00007fff205fe950 _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff205fa47b thread_start + 15 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x000000010d44ee00 rcx: 0x00007fd15008fa58 rdx: 0x0000000000000000 rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x00007fd15008fa80 rsp: 0x00007fd15008fa58 r8: 0x00007fd15008ff48 r9: 0x55bbc18f01abb906 r10: 0x000000010d44ee00 r11: 0x0000000000000246 r12: 0x0000000000000307 r13: 0x0000600002bbb380 r14: 0x0000000000000006 r15: 0x0000000000000016 rip: 0x00007fff205d0462 rfl: 0x0000000000000246 cr2: 0x000000010728df7c Logical CPU: 0 Error Code: 0x02000148 Trap Number: 133 Thread 0 instruction stream not available. Thread 0 last branch register state not available. 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All rights reserved. How to cite UCSF ChimeraX > open ""/Users/keiichi/#Keiichi General/Manuscript/2021 Manuscripts/21PNA > Spiroplasma fibril Sasajima/210423 Discussion memo for revision/210510 > Repleca 3DEM for handedness/tomogram_average_c2.mrc"" Opened tomogram_average_c2.mrc, grid size 200,200,200, pixel 1, shown at level 374, step 1, values float32 OpenGL version: 4.1 ATI-4.2.15 OpenGL renderer: AMD Radeon Pro 580 OpenGL Engine OpenGL vendor: ATI Technologies Inc.Hardware: Hardware Overview: Model Name: iMac Model Identifier: iMac18,3 Processor Name: Quad-Core Intel Core i7 Processor Speed: 4.2 GHz Number of Processors: 1 Total Number of Cores: 4 L2 Cache (per Core): 256 KB L3 Cache: 8 MB Hyper-Threading Technology: Enabled Memory: 32 GB System Firmware Version: 429.80.1.0.0 SMC Version (system): 2.41f2 Software: System Software Overview: System Version: macOS 11.2.3 (20D91) Kernel Version: Darwin 20.3.0 Time since boot: 3 days 21:48 Graphics/Displays: Radeon Pro 580: Chipset Model: Radeon Pro 580 Type: GPU Bus: PCIe PCIe Lane Width: x16 VRAM (Total): 8 GB Vendor: AMD (0x1002) Device ID: 0x67df Revision ID: 0x00c0 ROM Revision: 113-D000AA-931 VBIOS Version: 113-D0001A1X-025 EFI Driver Version: 01.00.931 Metal Family: Supported, Metal GPUFamily macOS 2 Displays: iMac: Display Type: Built-In Retina LCD Resolution: 5120 x 2880 Retina Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.9 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.0 Babel: 2.8.0 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2020.6.20 chardet: 3.0.4 ChimeraX-AddH: 2.1.3 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.1 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.6.1 ChimeraX-AtomSearch: 2.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 1.0.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.0 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.0 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.1 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.0 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-CommandLine: 1.1.3 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.1.1 ChimeraX-CoreFormats: 1.0 ChimeraX-coulombic: 1.0.1 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-DataFormats: 1.0 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.0 ChimeraX-Hbonds: 2.0 ChimeraX-Help: 1.0 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.0 ChimeraX-ImageFormats: 1.0 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0 ChimeraX-Label: 1.0 ChimeraX-ListInfo: 1.0 ChimeraX-Log: 1.1.1 ChimeraX-LookingGlass: 1.1 ChimeraX-Map: 1.0.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.0 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 1.1 ChimeraX-MDcrds: 2.0 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.0 ChimeraX-mmCIF: 2.2 ChimeraX-MMTF: 2.0 ChimeraX-Modeller: 1.0 ChimeraX-ModelPanel: 1.0 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.0 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0 ChimeraX-OpenCommand: 1.2.1 ChimeraX-PDB: 2.1 ChimeraX-PDBBio: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0 ChimeraX-PubChem: 2.0 ChimeraX-Read-Pbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.0 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.2 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SeqView: 2.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.0 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.0 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.0.4 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.0 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.0 ChimeraX-ToolshedUtils: 1.0 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.2.3 ChimeraX-uniprot: 2.0 ChimeraX-ViewDockX: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.3 comtypes: 1.1.7 cxservices: 1.0 cycler: 0.10.0 Cython: 0.29.20 decorator: 4.4.2 distlib: 0.3.1 docutils: 0.16 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 2.10.0 html2text: 2020.1.16 idna: 2.10 ihm: 0.16 imagecodecs: 2020.5.30 imagecodecs-lite: 2020.1.31 imagesize: 1.2.0 ipykernel: 5.3.0 ipython: 7.15.0 ipython-genutils: 0.2.0 jedi: 0.17.2 Jinja2: 2.11.2 jupyter-client: 6.1.3 jupyter-core: 4.6.3 kiwisolver: 1.2.0 line-profiler: 2.1.2 lxml: 4.5.1 MarkupSafe: 1.1.1 matplotlib: 3.2.1 msgpack: 1.0.0 netifaces: 0.10.9 networkx: 2.4 numexpr: 2.7.1 numpy: 1.18.5 numpydoc: 1.0.0 openvr: 1.12.501 packaging: 20.4 parso: 0.7.1 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 7.1.2 pip: 20.2.2 pkginfo: 1.5.0.1 prompt-toolkit: 3.0.7 psutil: 5.7.0 ptyprocess: 0.6.0 pycollada: 0.7.1 pydicom: 2.0.0 Pygments: 2.6.1 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.12.3 PyQt5-sip: 4.19.19 PyQtWebEngine-commercial: 5.12.1 python-dateutil: 2.8.1 pytz: 2020.1 pyzmq: 19.0.2 qtconsole: 4.7.4 QtPy: 1.9.0 RandomWords: 0.3.0 requests: 2.24.0 scipy: 1.4.1 setuptools: 49.4.0 sfftk-rw: 0.6.6.dev0 six: 1.15.0 snowballstemmer: 2.0.0 sortedcontainers: 2.2.2 Sphinx: 3.1.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 1.0.3 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.4 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2020.6.3 tinyarray: 1.2.2 tornado: 6.0.4 traitlets: 5.0.4 urllib3: 1.25.10 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.34.2 }}} " defect closed normal Graphics nonchimerax all ChimeraX