id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 4574 Crash on Big Sur due to invalid address lilyfowler02@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Darwin-20.3.0-x86_64-i386-64bit ChimeraX Version: 1.1.1 (2020-10-07 08:32:49 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Process: ChimeraX [5478] Path: /Volumes/VOLUME/*/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX Identifier: edu.ucsf.cgl.ChimeraX Version: 1.1.1 (1.1.1.0) Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: ChimeraX [5478] User ID: 501 Date/Time: 2021-04-28 13:04:33.605 +0100 OS Version: macOS 11.2 (20D64) Report Version: 12 Bridge OS Version: 5.2 (18P4346) Anonymous UUID: 52ACDED0-9362-AF14-3278-137CB4270DAC Sleep/Wake UUID: D29F741C-9220-4D26-8344-1A3F43470F51 Time Awake Since Boot: 36000 seconds Time Since Wake: 10000 seconds System Integrity Protection: enabled Notes: Translocated Process Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread Exception Type: EXC_BAD_ACCESS (SIGSEGV) Exception Codes: KERN_INVALID_ADDRESS at 0x000000000000005e Exception Note: EXC_CORPSE_NOTIFY VM Regions Near 0x5e: --> __TEXT 10eb92000-10eb93000 [ 4K] r-x/r-x SM=COW /var/folders/*/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread 0 libsystem_kernel.dylib 0x00007fff203e8462 __pthread_kill + 10 1 libsystem_pthread.dylib 0x00007fff20416610 pthread_kill + 263 2 libsystem_c.dylib 0x00007fff202f8ba3 raise + 26 3 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Thread 17:: Chrome_ChildIOThread 0 libsystem_kernel.dylib 0x00007fff203e67e2 kevent + 10 1 QtWebEngineCore 0x000000012163a9a9 0x11f1d7000 + 38156713 2 QtWebEngineCore 0x0000000121637cbd 0x11f1d7000 + 38145213 3 QtWebEngineCore 0x00000001213eecdc 0x11f1d7000 + 35749084 4 QtWebEngineCore 0x0000000121356085 0x11f1d7000 + 35123333 5 QtWebEngineCore 0x00000001213a89bc 0x11f1d7000 + 35461564 6 QtWebEngineCore 0x00000001213e8717 0x11f1d7000 + 35723031 7 libsystem_pthread.dylib 0x00007fff20416950 _pthread_start + 224 8 libsystem_pthread.dylib 0x00007fff2041247b thread_start + 15 Thread 18:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff203e1e7e mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff203e21f0 mach_msg + 60 2 QtWebEngineCore 0x000000012137932d 0x11f1d7000 + 35267373 3 QtWebEngineCore 0x000000012137922f 0x11f1d7000 + 35267119 4 QtWebEngineCore 0x000000012132d05d 0x11f1d7000 + 34955357 5 QtWebEngineCore 0x0000000121356085 0x11f1d7000 + 35123333 6 QtWebEngineCore 0x00000001213a89bc 0x11f1d7000 + 35461564 7 QtWebEngineCore 0x00000001213e8717 0x11f1d7000 + 35723031 8 libsystem_pthread.dylib 0x00007fff20416950 _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff2041247b thread_start + 15 Thread 19:: TaskSchedulerSingleThreadForegroundBlocking1 0 libsystem_kernel.dylib 0x00007fff203e1e7e mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff203e21f0 mach_msg + 60 2 QtWebEngineCore 0x000000012137932d 0x11f1d7000 + 35267373 3 QtWebEngineCore 0x000000012137922f 0x11f1d7000 + 35267119 4 QtWebEngineCore 0x0000000121390d1a 0x11f1d7000 + 35364122 5 QtWebEngineCore 0x000000012139165b 0x11f1d7000 + 35366491 6 QtWebEngineCore 0x0000000121391324 0x11f1d7000 + 35365668 7 QtWebEngineCore 0x00000001213e8717 0x11f1d7000 + 35723031 8 libsystem_pthread.dylib 0x00007fff20416950 _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff2041247b thread_start + 15 Thread 20:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff203e1e7e mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff203e21f0 mach_msg + 60 2 QtWebEngineCore 0x000000012137932d 0x11f1d7000 + 35267373 3 QtWebEngineCore 0x000000012137922f 0x11f1d7000 + 35267119 4 QtWebEngineCore 0x000000012132d05d 0x11f1d7000 + 34955357 5 QtWebEngineCore 0x0000000121356085 0x11f1d7000 + 35123333 6 QtWebEngineCore 0x00000001213a89bc 0x11f1d7000 + 35461564 7 QtWebEngineCore 0x00000001213e8717 0x11f1d7000 + 35723031 8 libsystem_pthread.dylib 0x00007fff20416950 _pthread_start + 224 9 libsystem_pthread.dylib 0x00007fff2041247b thread_start + 15 Thread 21: 0 libsystem_pthread.dylib 0x00007fff20412458 start_wqthread + 0 Thread 22: 0 libsystem_pthread.dylib 0x00007fff20412458 start_wqthread + 0 Thread 23: 0 libsystem_pthread.dylib 0x00007fff20412458 start_wqthread + 0 Thread 24: 0 libsystem_pthread.dylib 0x00007fff20412458 start_wqthread + 0 Thread 25: 0 libsystem_pthread.dylib 0x00007fff20412458 start_wqthread + 0 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x0000000111fa1e00 rcx: 0x00007fec3fe77a58 rdx: 0x0000000000000000 rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x00007fec3fe77a80 rsp: 0x00007fec3fe77a58 r8: 0x00007fec3fe77f48 r9: 0x9ed312cf3272b4df r10: 0x0000000111fa1e00 r11: 0x0000000000000246 r12: 0x0000000000000307 r13: 0x00007fec27738588 r14: 0x000000000000000b r15: 0x0000000000000016 rip: 0x00007fff203e8462 rfl: 0x0000000000000246 cr2: 0x000000010f0aac68 Logical CPU: 0 Error Code: 0x02000148 Trap Number: 133 Thread 0 instruction stream: 2b a8 00 00 48 83 c0 08-48 89 45 a8 48 8b 7d c8 +...H...H.E.H.}. 48 3b 7d d0 73 27 48 8b-75 b0 48 89 c2 e8 1b 73 H;}.s'H.u.H....s 00 00 48 83 45 c8 18 49-8b 4e 08 48 85 c9 75 2d ..H.E..I.N.H..u- eb 3b 66 2e 0f 1f 84 00-00 00 00 00 90 48 8d 7d .;f..........H.} c0 4c 89 fe 4c 89 e2 e8-11 71 00 00 49 8b 4e 08 .L..L....q..I.N. 48 85 c9 74 18 0f 1f 84-00 00 00 00 00 48 89 c8 H..t.........H.. 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0x7fff405bbfff com.apple.TextInput (1.0 - 1.0) /System/Library/PrivateFrameworks/TextInput.framework/Versions/A/TextInput 0x7fff41632000 - 0x7fff41635fff com.apple.quartzframework (1.5 - 25) /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz 0x7fff41a11000 - 0x7fff41a2ffff libCGInterfaces.dylib (544.2) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib 0x7fff4401f000 - 0x7fff44298fff com.apple.RawCamera.bundle (9.10.0 - 1430) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera 0x7fff46d20000 - 0x7fff46d2bfff libGPUSupportMercury.dylib (18.1.1) /System/Library/PrivateFrameworks/GPUSupport.framework/Versions/A/Libraries/libGPUSupportMercury.dylib 0x7fff4838e000 - 0x7fff483ddfff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics 0x7fff5231b000 - 0x7fff52349fff com.apple.HelpData (2.3 - 200) /System/Library/PrivateFrameworks/HelpData.framework/Versions/A/HelpData 0x7fff5234a000 - 0x7fff52364fff com.apple.shortcut (2.16 - 117) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut 0x7fff52365000 - 0x7fff523f7fff com.apple.Symbolication (12.2 - 64541.7.1) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication 0x7fff54ee0000 - 0x7fff54f17fff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit 0x7fff5653b000 - 0x7fff5653efff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback 0x7fff5eb40000 - 0x7fff5efd0fff com.apple.driver.AppleIntelKBLGraphicsMTLDriver (16.1.10 - 16.0.1) /System/Library/Extensions/AppleIntelKBLGraphicsMTLDriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsMTLDriver 0x7fff5fd2d000 - 0x7fff60d10fff com.apple.driver.AppleIntelKBLGraphicsGLDriver (16.1.10 - 16.0.1) /System/Library/Extensions/AppleIntelKBLGraphicsGLDriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsGLDriver 0x7fff6a4f6000 - 0x7fff6a4fafff libmetal_timestamp.dylib (31001.161) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib 0x7fff6c964000 - 0x7fff6c96afff libCoreFSCache.dylib (177.22) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib 0x7fff6c96b000 - 0x7fff6c96ffff libCoreVMClient.dylib (177.22) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib 0x7fff6c970000 - 0x7fff6c97ffff com.apple.opengl (18.1.1 - 18.1.1) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL 0x7fff6c980000 - 0x7fff6c982fff libCVMSPluginSupport.dylib (18.1.1) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib 0x7fff6c983000 - 0x7fff6c98bfff libGFXShared.dylib (18.1.1) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib 0x7fff6c98c000 - 0x7fff6c9bffff libGLImage.dylib (18.1.1) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib 0x7fff6c9c0000 - 0x7fff6c9fcfff libGLU.dylib (18.1.1) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib 0x7fff6c9fd000 - 0x7fff6cb91fff libGLProgrammability.dylib (18.1.1) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib 0x7fff6cb92000 - 0x7fff6cb9cfff libGL.dylib (18.1.1) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib 0x7fff6cb9d000 - 0x7fff6cd18fff GLEngine (18.1.1) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine 0x7fff6cd19000 - 0x7fff6cd42fff GLRendererFloat (18.1.1) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat 0x7fff6dfd3000 - 0x7fff6e02bfff com.apple.opencl (4.5 - 4.5) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL 0x7fff6f0aa000 - 0x7fff6f0b1fff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL 0x7fff7023c000 - 0x7fff70246fff com.apple.AccessibilityBundles (1.0 - 173) /System/Library/PrivateFrameworks/AccessibilityBundles.framework/Versions/A/AccessibilityBundles 0x7fff74440000 - 0x7fff7444bfff com.apple.SymptomAnalytics (1.0 - 1431.40.36) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics 0x7fff74669000 - 0x7fff74681fff com.apple.SymptomPresentationFeed (1.0 - 1431.40.36) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed 0x7fff78198000 - 0x7fff7819ffff libRosetta.dylib (203.30) /usr/lib/libRosetta.dylib External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 13 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 28167 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=1.0G resident=0K(0%) swapped_out_or_unallocated=1.0G(100%) Writable regions: Total=1.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.1G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 384K 3 Activity Tracing 256K 1 CG backing stores 3240K 6 CG image 3768K 34 CG raster data 3372K 4 CoreAnimation 16.4M 36 CoreGraphics 12K 2 CoreUI image data 3996K 31 Foundation 16K 1 Kernel Alloc Once 8K 1 MALLOC 362.9M 350 MALLOC guard page 32K 8 MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated) MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated) OpenGL GLSL 512K 6 PROTECTED_MEMORY 4K 1 STACK GUARD 100K 25 Stack 140.7M 26 Stack Guard 56.0M 1 VM_ALLOCATE 185.7M 379 VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated) __CTF 759 1 __DATA 28.8M 586 __DATA_CONST 23.0M 265 __DATA_DIRTY 1192K 165 __FONT_DATA 4K 1 __GLSLBUILTINS 5176K 1 __LINKEDIT 513.7M 140 __OBJC_RO 60.6M 1 __OBJC_RW 2449K 2 __TEXT 543.0M 563 __UNICODE 588K 1 mapped file 248.6M 39 shared memory 52K 7 =========== ======= ======= TOTAL 2.6G 2690 TOTAL, minus reserved VM space 2.2G 2690 Log: UCSF ChimeraX version: 1.1.1 (2020-10-07) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 INTEL-16.1.10 OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 645 OpenGL vendor: Intel Inc.Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro15,4 Processor Name: Quad-Core Intel Core i5 Processor Speed: 1.4 GHz Number of Processors: 1 Total Number of Cores: 4 L2 Cache (per Core): 256 KB L3 Cache: 6 MB Hyper-Threading Technology: Enabled Memory: 8 GB System Firmware Version: 1554.80.3.0.0 (iBridge: 18.16.14346.0.0,0) Software: System Software Overview: System Version: macOS 11.2 (20D64) Kernel Version: Darwin 20.3.0 Time since boot: 1 day 15:21 Graphics/Displays: Intel Iris Plus Graphics 645: Chipset Model: Intel Iris Plus Graphics 645 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x3ea6 Revision ID: 0x0001 Metal Family: Supported, Metal GPUFamily macOS 2 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Framebuffer Depth: 24-Bit Color (ARGB8888) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.9 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.0 Babel: 2.8.0 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2020.6.20 chardet: 3.0.4 ChimeraX-AddH: 2.1.1 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.1 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.6.1 ChimeraX-AtomSearch: 2.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 1.0.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.0 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.0 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.1 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.0 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-CommandLine: 1.1.3 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.1.1 ChimeraX-CoreFormats: 1.0 ChimeraX-coulombic: 1.0.1 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-DataFormats: 1.0 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.0 ChimeraX-Hbonds: 2.0 ChimeraX-Help: 1.0 ChimeraX-HKCage: 1.0 ChimeraX-IHM: 1.0 ChimeraX-ImageFormats: 1.0 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0 ChimeraX-Label: 1.0 ChimeraX-ListInfo: 1.0 ChimeraX-Log: 1.1.1 ChimeraX-LookingGlass: 1.1 ChimeraX-Map: 1.0.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.0 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 1.1 ChimeraX-MDcrds: 2.0 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.0 ChimeraX-mmCIF: 2.2 ChimeraX-MMTF: 2.0 ChimeraX-Modeller: 1.0 ChimeraX-ModelPanel: 1.0 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.0 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0 ChimeraX-OpenCommand: 1.2.1 ChimeraX-PDB: 2.1 ChimeraX-PDBBio: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0 ChimeraX-PubChem: 2.0 ChimeraX-Read-Pbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.0 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.2 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SeqView: 2.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.0 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.0 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.0.4 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.0 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.0 ChimeraX-ToolshedUtils: 1.0 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.2.3 ChimeraX-uniprot: 2.0 ChimeraX-ViewDockX: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.3 comtypes: 1.1.7 cxservices: 1.0 cycler: 0.10.0 Cython: 0.29.20 decorator: 4.4.2 distlib: 0.3.1 docutils: 0.16 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 2.10.0 html2text: 2020.1.16 idna: 2.10 ihm: 0.16 imagecodecs: 2020.5.30 imagecodecs-lite: 2020.1.31 imagesize: 1.2.0 ipykernel: 5.3.0 ipython: 7.15.0 ipython-genutils: 0.2.0 jedi: 0.17.2 Jinja2: 2.11.2 jupyter-client: 6.1.3 jupyter-core: 4.6.3 kiwisolver: 1.2.0 line-profiler: 2.1.2 lxml: 4.5.1 MarkupSafe: 1.1.1 matplotlib: 3.2.1 msgpack: 1.0.0 netifaces: 0.10.9 networkx: 2.4 numexpr: 2.7.1 numpy: 1.18.5 numpydoc: 1.0.0 openvr: 1.12.501 packaging: 20.4 parso: 0.7.1 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 7.1.2 pip: 20.2.2 pkginfo: 1.5.0.1 prompt-toolkit: 3.0.7 psutil: 5.7.0 ptyprocess: 0.6.0 pycollada: 0.7.1 pydicom: 2.0.0 Pygments: 2.6.1 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.12.3 PyQt5-sip: 4.19.19 PyQtWebEngine-commercial: 5.12.1 python-dateutil: 2.8.1 pytz: 2020.1 pyzmq: 19.0.2 qtconsole: 4.7.4 QtPy: 1.9.0 RandomWords: 0.3.0 requests: 2.24.0 scipy: 1.4.1 setuptools: 49.4.0 sfftk-rw: 0.6.6.dev0 six: 1.15.0 snowballstemmer: 2.0.0 sortedcontainers: 2.2.2 Sphinx: 3.1.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 1.0.3 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.4 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2020.6.3 tinyarray: 1.2.2 tornado: 6.0.4 traitlets: 5.0.4 urllib3: 1.25.10 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.34.2 }}} " defect feedback normal Core Tom Goddard all ChimeraX