id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 4426 Dual display crash Mohinder.pal@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Darwin-19.6.0-x86_64-i386-64bit ChimeraX Version: 1.1.1 (2020-10-07 08:32:49 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Process: ChimeraX [22248] Path: /Applications/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX Identifier: edu.ucsf.cgl.ChimeraX Version: 1.1.1 (1.1.1.0) Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: ChimeraX [22248] User ID: 501 Date/Time: 2021-03-27 17:25:44.484 +0000 OS Version: Mac OS X 10.15.7 (19H15) Report Version: 12 Bridge OS Version: 3.0 (14Y908) Anonymous UUID: CA4192D3-F7BE-18A4-C882-9512C7EFAB61 Sleep/Wake UUID: 9AB8E407-C0DA-465F-B018-D48D336BF104 Time Awake Since Boot: 29000 seconds Time Since Wake: 3500 seconds System Integrity Protection: enabled Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread Exception Type: EXC_BAD_ACCESS (SIGSEGV) Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000028 Exception Note: EXC_CORPSE_NOTIFY VM Regions Near 0x28: --> __TEXT 000000010b3c6000-000000010b3c7000 [ 4K] r-x/r-x SM=COW /Applications/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread 0 libsystem_kernel.dylib 0x00007fff6944433a __pthread_kill + 10 1 libsystem_pthread.dylib 0x00007fff69500e60 pthread_kill + 430 2 libsystem_c.dylib 0x00007fff6935b93e raise + 26 3 libsystem_platform.dylib 0x00007fff694f55fd _sigtramp + 29 4 ??? 000000000000000000 0 + 0 5 libqcocoa.dylib 0x0000000122f1806b 0x122f00000 + 98411 6 libqcocoa.dylib 0x0000000122f1841f 0x122f00000 + 99359 7 com.apple.Foundation 0x00007fff318b4784 -[__NSObserver _doit:] + 296 8 com.apple.CoreFoundation 0x00007fff2f23b80f __CFNOTIFICATIONCENTER_IS_CALLING_OUT_TO_AN_OBSERVER__ + 12 9 com.apple.CoreFoundation 0x00007fff2f23b7a3 ___CFXRegistrationPost1_block_invoke + 63 10 com.apple.CoreFoundation 0x00007fff2f23b718 _CFXRegistrationPost1 + 372 11 com.apple.CoreFoundation 0x00007fff2f23b384 ___CFXNotificationPost_block_invoke + 80 12 com.apple.CoreFoundation 0x00007fff2f20b4fd -[_CFXNotificationRegistrar find:object:observer:enumerator:] + 1554 13 com.apple.CoreFoundation 0x00007fff2f20a9a9 _CFXNotificationPost + 1351 14 com.apple.Foundation 0x00007fff31888786 -[NSNotificationCenter postNotificationName:object:userInfo:] + 59 15 com.apple.AppKit 0x00007fff2cd4c6d5 -[NSWindow _postWindowDidChangeBackingPropertiesAndDisplayWindowForPreviousBackingScaleFactor:previousColorSpace:] + 192 16 com.apple.AppKit 0x00007fff2c72599b __67-[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:]_block_invoke + 552 17 com.apple.AppKit 0x00007fff2c50e36e NSPerformVisuallyAtomicChange + 132 18 com.apple.AppKit 0x00007fff2c72576d -[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:] + 69 19 com.apple.AppKit 0x00007fff2c50f9a3 -[NSWindow _setFrameCommon:display:fromServer:] + 1398 20 libqcocoa.dylib 0x0000000122f1a5e3 0x122f00000 + 108003 21 libqcocoa.dylib 0x0000000122f1a1f2 0x122f00000 + 106994 22 QtGui 0x0000000118d29731 QWindow::setGeometry(QRect const&) + 513 23 QtWidgets 0x0000000118364380 QWidgetPrivate::show_sys() + 816 24 QtWidgets 0x00000001183663f5 QWidgetPrivate::show_helper() + 405 25 QtWidgets 0x0000000118367043 QWidgetPrivate::setVisible(bool) + 819 26 QtWidgets.so 0x0000000117e37ffe sipQMenu::setVisible(bool) + 110 27 QtWidgets 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56 sip.so 0x000000011891fc40 sip_api_call_method + 136 57 QtGui.so 0x000000011b68dc7b sipQWindow::event(QEvent*) + 123 58 QtWidgets 0x000000011832b67d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269 59 QtWidgets 0x000000011832ca82 QApplication::notify(QObject*, QEvent*) + 594 60 QtWidgets.so 0x0000000117eeb3ca sipQApplication::notify(QObject*, QEvent*) + 234 61 QtCore 0x0000000119432324 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212 62 QtGui 0x0000000118d1bcac QGuiApplicationPrivate::processMouseEvent(QWindowSystemInterfacePrivate::MouseEvent*) + 5292 63 QtGui 0x0000000118d0246b QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 219 64 libqcocoa.dylib 0x0000000122f36900 0x122f00000 + 223488 65 libqcocoa.dylib 0x0000000122f37068 0x122f00000 + 225384 66 com.apple.CoreFoundation 0x00007fff2f245d52 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17 67 com.apple.CoreFoundation 0x00007fff2f245cf1 __CFRunLoopDoSource0 + 103 68 com.apple.CoreFoundation 0x00007fff2f245b0b __CFRunLoopDoSources0 + 209 69 com.apple.CoreFoundation 0x00007fff2f24483a __CFRunLoopRun + 927 70 com.apple.CoreFoundation 0x00007fff2f243e3e CFRunLoopRunSpecific + 462 71 com.apple.HIToolbox 0x00007fff2de70abd RunCurrentEventLoopInMode + 292 72 com.apple.HIToolbox 0x00007fff2de706f4 ReceiveNextEventCommon + 359 73 com.apple.HIToolbox 0x00007fff2de70579 _BlockUntilNextEventMatchingListInModeWithFilter + 64 74 com.apple.AppKit 0x00007fff2c4b6039 _DPSNextEvent + 883 75 com.apple.AppKit 0x00007fff2c4b4880 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352 76 com.apple.AppKit 0x00007fff2c4a658e -[NSApplication run] + 658 77 libqcocoa.dylib 0x0000000122f35de3 0x122f00000 + 220643 78 QtCore 0x000000011942d93f QEventLoop::exec(QFlags) + 431 79 QtCore 0x0000000119432932 QCoreApplication::exec() + 130 80 QtWidgets.so 0x0000000117fda7d2 meth_QApplication_exec_(_object*, _object*) + 82 81 org.python.python 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_PyMethodDef_RawFastCallKeywords + 653 96 org.python.python 0x000000010b3f18b9 _PyCFunction_FastCallKeywords + 41 97 org.python.python 0x000000010b4c6b60 call_function + 656 98 org.python.python 0x000000010b4c38ae _PyEval_EvalFrameDefault + 26718 99 org.python.python 0x000000010b4c7a2c _PyEval_EvalCodeWithName + 3276 100 org.python.python 0x000000010b3f1879 _PyFunction_FastCallKeywords + 217 101 org.python.python 0x000000010b4c6bd4 call_function + 772 102 org.python.python 0x000000010b4c38ae _PyEval_EvalFrameDefault + 26718 103 org.python.python 0x000000010b4c7a2c _PyEval_EvalCodeWithName + 3276 104 org.python.python 0x000000010b3f1377 _PyFunction_FastCallDict + 455 105 org.python.python 0x000000010b521af3 pymain_run_module + 147 106 org.python.python 0x000000010b520bdc pymain_main + 5900 107 org.python.python 0x000000010b51f4c3 Py_Main + 51 108 edu.ucsf.cgl.ChimeraX 0x000000010b3c6dc8 main + 120 109 libdyld.dylib 0x00007fff692fccc9 start + 1 Thread 1: 0 libsystem_kernel.dylib 0x00007fff69440882 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff69501425 _pthread_cond_wait + 698 2 libopenblasp-r0.3.7.dylib 0x000000010cce7c3b blas_thread_server + 619 3 libsystem_pthread.dylib 0x00007fff69501109 _pthread_start + 148 4 libsystem_pthread.dylib 0x00007fff694fcb8b thread_start + 15 Thread 2: 0 libsystem_kernel.dylib 0x00007fff69440882 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff69501425 _pthread_cond_wait + 698 2 libopenblasp-r0.3.7.dylib 0x000000010cce7c3b blas_thread_server + 619 3 libsystem_pthread.dylib 0x00007fff69501109 _pthread_start + 148 4 libsystem_pthread.dylib 0x00007fff694fcb8b thread_start + 15 Thread 3: 0 libsystem_kernel.dylib 0x00007fff69440882 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff69501425 _pthread_cond_wait + 698 2 libopenblasp-r0.3.7.dylib 0x000000010cce7c3b blas_thread_server + 619 3 libsystem_pthread.dylib 0x00007fff69501109 _pthread_start + 148 4 libsystem_pthread.dylib 0x00007fff694fcb8b thread_start + 15 Thread 4:: com.apple.NSEventThread 0 libsystem_kernel.dylib 0x00007fff6943ddfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6943e170 mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff2f245ef5 __CFRunLoopServiceMachPort + 247 3 com.apple.CoreFoundation 0x00007fff2f2449c2 __CFRunLoopRun + 1319 4 com.apple.CoreFoundation 0x00007fff2f243e3e CFRunLoopRunSpecific + 462 5 com.apple.AppKit 0x00007fff2c657954 _NSEventThread + 132 6 libsystem_pthread.dylib 0x00007fff69501109 _pthread_start + 148 7 libsystem_pthread.dylib 0x00007fff694fcb8b thread_start + 15 Thread 5:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff6943ddfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6943e170 mach_msg + 60 2 QtWebEngineCore 0x000000011daf232d 0x11b950000 + 35267373 3 QtWebEngineCore 0x000000011daf222f 0x11b950000 + 35267119 4 QtWebEngineCore 0x000000011daa605d 0x11b950000 + 34955357 5 QtWebEngineCore 0x000000011dacf085 0x11b950000 + 35123333 6 QtWebEngineCore 0x000000011db219bc 0x11b950000 + 35461564 7 QtWebEngineCore 0x000000011db61717 0x11b950000 + 35723031 8 libsystem_pthread.dylib 0x00007fff69501109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff694fcb8b thread_start + 15 Thread 6:: DnsConfigService 0 libsystem_kernel.dylib 0x00007fff69442766 kevent + 10 1 QtWebEngineCore 0x000000011ddb39a9 0x11b950000 + 38156713 2 QtWebEngineCore 0x000000011ddb0cbd 0x11b950000 + 38145213 3 QtWebEngineCore 0x000000011db67cdc 0x11b950000 + 35749084 4 QtWebEngineCore 0x000000011dacf085 0x11b950000 + 35123333 5 QtWebEngineCore 0x000000011db219bc 0x11b950000 + 35461564 6 QtWebEngineCore 0x000000011db61717 0x11b950000 + 35723031 7 libsystem_pthread.dylib 0x00007fff69501109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff694fcb8b thread_start + 15 Thread 7:: TaskSchedulerServiceThread 0 libsystem_kernel.dylib 0x00007fff69442766 kevent + 10 1 QtWebEngineCore 0x000000011ddb39a9 0x11b950000 + 38156713 2 QtWebEngineCore 0x000000011ddb0cbd 0x11b950000 + 38145213 3 QtWebEngineCore 0x000000011db67cc4 0x11b950000 + 35749060 4 QtWebEngineCore 0x000000011dacf085 0x11b950000 + 35123333 5 QtWebEngineCore 0x000000011db10a74 0x11b950000 + 35392116 6 QtWebEngineCore 0x000000011db219bc 0x11b950000 + 35461564 7 QtWebEngineCore 0x000000011db61717 0x11b950000 + 35723031 8 libsystem_pthread.dylib 0x00007fff69501109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff694fcb8b thread_start + 15 Thread 8:: TaskSchedulerForegroundWorker 0 libsystem_kernel.dylib 0x00007fff6943ddfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6943e170 mach_msg + 60 2 QtWebEngineCore 0x000000011daf232d 0x11b950000 + 35267373 3 QtWebEngineCore 0x000000011daf2421 0x11b950000 + 35267617 4 QtWebEngineCore 0x000000011db09d28 0x11b950000 + 35364136 5 QtWebEngineCore 0x000000011db0a65b 0x11b950000 + 35366491 6 QtWebEngineCore 0x000000011db0a2c4 0x11b950000 + 35365572 7 QtWebEngineCore 0x000000011db61717 0x11b950000 + 35723031 8 libsystem_pthread.dylib 0x00007fff69501109 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0x00007fff6943ddfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6943e170 mach_msg + 60 2 QtWebEngineCore 0x000000011daf232d 0x11b950000 + 35267373 3 QtWebEngineCore 0x000000011daf222f 0x11b950000 + 35267119 4 QtWebEngineCore 0x000000011daa605d 0x11b950000 + 34955357 5 QtWebEngineCore 0x000000011dacf085 0x11b950000 + 35123333 6 QtWebEngineCore 0x000000011db219bc 0x11b950000 + 35461564 7 QtWebEngineCore 0x000000011db61717 0x11b950000 + 35723031 8 libsystem_pthread.dylib 0x00007fff69501109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff694fcb8b thread_start + 15 Thread 16:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff6943ddfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6943e170 mach_msg + 60 2 QtWebEngineCore 0x000000011daf232d 0x11b950000 + 35267373 3 QtWebEngineCore 0x000000011daf222f 0x11b950000 + 35267119 4 QtWebEngineCore 0x000000011daa605d 0x11b950000 + 34955357 5 QtWebEngineCore 0x000000011dacf085 0x11b950000 + 35123333 6 QtWebEngineCore 0x000000011db219bc 0x11b950000 + 35461564 7 QtWebEngineCore 0x000000011db61717 0x11b950000 + 35723031 8 libsystem_pthread.dylib 0x00007fff69501109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff694fcb8b thread_start + 15 Thread 17:: Chrome_InProcGpuThread 0 libsystem_kernel.dylib 0x00007fff6943ddfa mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6943e170 mach_msg + 60 2 QtWebEngineCore 0x000000011daf232d 0x11b950000 + 35267373 3 QtWebEngineCore 0x000000011daa6052 0x11b950000 + 34955346 4 QtWebEngineCore 0x000000011dacf085 0x11b950000 + 35123333 5 QtWebEngineCore 0x000000011db219bc 0x11b950000 + 35461564 6 QtWebEngineCore 0x000000011db61717 0x11b950000 + 35723031 7 libsystem_pthread.dylib 0x00007fff69501109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff694fcb8b thread_start + 15 Thread 18:: Chrome_ChildIOThread 0 libsystem_kernel.dylib 0x00007fff69442766 kevent + 10 1 QtWebEngineCore 0x000000011ddb39a9 0x11b950000 + 38156713 2 QtWebEngineCore 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3 QtWebEngineCore 0x000000011daf2421 0x11b950000 + 35267617 4 QtWebEngineCore 0x000000011db09d28 0x11b950000 + 35364136 5 QtWebEngineCore 0x000000011db0a65b 0x11b950000 + 35366491 6 QtWebEngineCore 0x000000011db0a2c4 0x11b950000 + 35365572 7 QtWebEngineCore 0x000000011db61717 0x11b950000 + 35723031 8 libsystem_pthread.dylib 0x00007fff69501109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff694fcb8b thread_start + 15 Thread 25: 0 libsystem_pthread.dylib 0x00007fff694fcb68 start_wqthread + 0 Thread 26: 0 libsystem_pthread.dylib 0x00007fff694fcb68 start_wqthread + 0 Thread 27: 0 libsystem_pthread.dylib 0x00007fff694fcb68 start_wqthread + 0 Thread 28: 0 libsystem_pthread.dylib 0x00007fff694fcb68 start_wqthread + 0 Thread 29: 0 libsystem_kernel.dylib 0x00007fff69440882 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff69501425 _pthread_cond_wait + 698 2 org.python.python 0x000000010b50b0af PyThread_acquire_lock_timed + 351 3 org.python.python 0x000000010b5569df acquire_timed + 111 4 org.python.python 0x000000010b55675c lock_PyThread_acquire_lock + 44 5 org.python.python 0x000000010b3f256a _PyMethodDef_RawFastCallKeywords + 714 6 org.python.python 0x000000010b3f8571 _PyMethodDescr_FastCallKeywords + 81 7 org.python.python 0x000000010b4c6bfe call_function + 814 8 org.python.python 0x000000010b4c37fa _PyEval_EvalFrameDefault + 26538 9 org.python.python 0x000000010b4c7a2c _PyEval_EvalCodeWithName + 3276 10 org.python.python 0x000000010b3f1879 _PyFunction_FastCallKeywords + 217 11 org.python.python 0x000000010b4c6bd4 call_function + 772 12 org.python.python 0x000000010b4c37fa _PyEval_EvalFrameDefault + 26538 13 org.python.python 0x000000010b4c7a2c _PyEval_EvalCodeWithName + 3276 14 org.python.python 0x000000010b3f1879 _PyFunction_FastCallKeywords + 217 15 org.python.python 0x000000010b4c6bd4 call_function + 772 16 org.python.python 0x000000010b4c37fa _PyEval_EvalFrameDefault + 26538 17 org.python.python 0x000000010b3f1d61 function_code_fastcall + 177 18 org.python.python 0x000000010b4c6bd4 call_function + 772 19 org.python.python 0x000000010b4c37fa _PyEval_EvalFrameDefault + 26538 20 org.python.python 0x000000010b3f1d61 function_code_fastcall + 177 21 org.python.python 0x000000010b4c6bd4 call_function + 772 22 org.python.python 0x000000010b4c37fa _PyEval_EvalFrameDefault + 26538 23 org.python.python 0x000000010b3f1d61 function_code_fastcall + 177 24 org.python.python 0x000000010b3f2873 _PyObject_Call_Prepend + 131 25 org.python.python 0x000000010b3f19d8 PyObject_Call + 136 26 org.python.python 0x000000010b557287 t_bootstrap + 71 27 org.python.python 0x000000010b50ad19 pythread_wrapper + 25 28 libsystem_pthread.dylib 0x00007fff69501109 _pthread_start + 148 29 libsystem_pthread.dylib 0x00007fff694fcb8b thread_start + 15 Thread 30: 0 libsystem_pthread.dylib 0x00007fff694fcb68 start_wqthread + 0 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x0000000118cacdc0 rcx: 0x00007fd3d0777a58 rdx: 0x0000000000000000 rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x00007fd3d0777a80 rsp: 0x00007fd3d0777a58 r8: 0x00007fd3d0777f48 r9: 0x6aa1b6a2786097fb r10: 0x0000000118cacdc0 r11: 0x0000000000000246 r12: 0x0000000000000307 r13: 0x00006000039ab120 r14: 0x000000000000000b r15: 0x0000000000000016 rip: 0x00007fff6944433a rfl: 0x0000000000000246 cr2: 0x000000010b62cfa4 Logical CPU: 0 Error Code: 0x02000148 Trap Number: 133 Binary Images: 0x10b3c6000 - 0x10b3c6ff3 +edu.ucsf.cgl.ChimeraX (1.1.1 - 1.1.1.0) /Applications/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX 0x10b3ce000 - 0x10b5c9fff +org.python.python (3.7.8, [c] 2001-2019 Python Software Foundation. - 3.7.8) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/Python 0x10b944000 - 0x10b945ff7 +_heapq.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_heapq.cpython-37m-darwin.so 0x10ba0e000 - 0x10ba11ff3 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0x7fff66120fff libMatch.1.dylib (36) /usr/lib/libMatch.1.dylib 0x7fff6614f000 - 0x7fff6616fff7 libMobileGestalt.dylib (826.140.5) /usr/lib/libMobileGestalt.dylib 0x7fff661ef000 - 0x7fff662ccff7 libSMC.dylib (20) /usr/lib/libSMC.dylib 0x7fff662e1000 - 0x7fff662e2fff libSystem.B.dylib (1281.100.1) /usr/lib/libSystem.B.dylib 0x7fff662e3000 - 0x7fff6636eff7 libTelephonyUtilDynamic.dylib (5017.1) /usr/lib/libTelephonyUtilDynamic.dylib 0x7fff6636f000 - 0x7fff66370fff libThaiTokenizer.dylib (3) /usr/lib/libThaiTokenizer.dylib 0x7fff66388000 - 0x7fff6639efff libapple_nghttp2.dylib (1.39.2) /usr/lib/libapple_nghttp2.dylib 0x7fff663d3000 - 0x7fff66445ff7 libarchive.2.dylib (72.140.1) /usr/lib/libarchive.2.dylib 0x7fff66446000 - 0x7fff664dffe5 libate.dylib (3.0.1) /usr/lib/libate.dylib 0x7fff664e3000 - 0x7fff664e3ff3 libauto.dylib (187) /usr/lib/libauto.dylib 0x7fff664e4000 - 0x7fff665a8ffe libboringssl.dylib (283.120.1) /usr/lib/libboringssl.dylib 0x7fff665a9000 - 0x7fff665b9ffb libbsm.0.dylib (60.100.1) /usr/lib/libbsm.0.dylib 0x7fff665ba000 - 0x7fff665c6fff libbz2.1.0.dylib (44) /usr/lib/libbz2.1.0.dylib 0x7fff665c7000 - 0x7fff66619fff libc++.1.dylib (902.1) /usr/lib/libc++.1.dylib 0x7fff6661a000 - 0x7fff6662fffb libc++abi.dylib (902) /usr/lib/libc++abi.dylib 0x7fff66630000 - 0x7fff66630fff libcharset.1.dylib (59) /usr/lib/libcharset.1.dylib 0x7fff66631000 - 0x7fff66642fff libcmph.dylib (8) /usr/lib/libcmph.dylib 0x7fff66643000 - 0x7fff6665afd7 libcompression.dylib (87) /usr/lib/libcompression.dylib 0x7fff66934000 - 0x7fff6694aff7 libcoretls.dylib (167) /usr/lib/libcoretls.dylib 0x7fff6694b000 - 0x7fff6694cfff libcoretls_cfhelpers.dylib (167) /usr/lib/libcoretls_cfhelpers.dylib 0x7fff66def000 - 0x7fff66ef3fef libcrypto.44.dylib (47.140.1) /usr/lib/libcrypto.44.dylib 0x7fff66ef6000 - 0x7fff66f01fff libcsfde.dylib (551) /usr/lib/libcsfde.dylib 0x7fff66f09000 - 0x7fff66f68ff7 libcups.2.dylib (483.6) /usr/lib/libcups.2.dylib 0x7fff66f6a000 - 0x7fff66fcfff7 libcurl.4.dylib (118.120.2) /usr/lib/libcurl.4.dylib 0x7fff67072000 - 0x7fff67072fff libenergytrace.dylib (21) /usr/lib/libenergytrace.dylib 0x7fff67073000 - 0x7fff6708bfff libexpat.1.dylib (19.60.2) /usr/lib/libexpat.1.dylib 0x7fff67099000 - 0x7fff6709bfff libfakelink.dylib (149.1) /usr/lib/libfakelink.dylib 0x7fff670aa000 - 0x7fff670affff libgermantok.dylib (24) /usr/lib/libgermantok.dylib 0x7fff670b0000 - 0x7fff670b9ff7 libheimdal-asn1.dylib (564.140.1) /usr/lib/libheimdal-asn1.dylib 0x7fff670ba000 - 0x7fff671aafff libiconv.2.dylib (59) /usr/lib/libiconv.2.dylib 0x7fff671ab000 - 0x7fff67402fff libicucore.A.dylib (64260.0.1) /usr/lib/libicucore.A.dylib 0x7fff6741c000 - 0x7fff6741dfff liblangid.dylib (133) /usr/lib/liblangid.dylib 0x7fff6741e000 - 0x7fff67436ff3 liblzma.5.dylib (16) /usr/lib/liblzma.5.dylib 0x7fff6744e000 - 0x7fff674f5ff7 libmecab.dylib (883.11) /usr/lib/libmecab.dylib 0x7fff674f6000 - 0x7fff67758ff1 libmecabra.dylib (883.11) /usr/lib/libmecabra.dylib 0x7fff67ac5000 - 0x7fff67af4fff libncurses.5.4.dylib (57) /usr/lib/libncurses.5.4.dylib 0x7fff67c24000 - 0x7fff680a0ff5 libnetwork.dylib (1880.120.4) /usr/lib/libnetwork.dylib 0x7fff680a1000 - 0x7fff680b8fff libnetworkextension.dylib (1095.140.2) /usr/lib/libnetworkextension.dylib 0x7fff68141000 - 0x7fff68174fde libobjc.A.dylib (787.1) /usr/lib/libobjc.A.dylib 0x7fff68175000 - 0x7fff68176ff7 libodfde.dylib (26) /usr/lib/libodfde.dylib 0x7fff68187000 - 0x7fff6818bfff libpam.2.dylib (25.100.1) /usr/lib/libpam.2.dylib 0x7fff6818e000 - 0x7fff681c4ff7 libpcap.A.dylib (89.120.1) /usr/lib/libpcap.A.dylib 0x7fff68204000 - 0x7fff68212ff9 libperfcheck.dylib (37.100.2) /usr/lib/libperfcheck.dylib 0x7fff68248000 - 0x7fff68260fff libresolv.9.dylib (67.40.1) /usr/lib/libresolv.9.dylib 0x7fff68262000 - 0x7fff682a6ff7 libsandbox.1.dylib (1217.141.2) /usr/lib/libsandbox.1.dylib 0x7fff682a7000 - 0x7fff682b9ff7 libsasl2.2.dylib (213.120.1) /usr/lib/libsasl2.2.dylib 0x7fff682ba000 - 0x7fff682bbff7 libspindump.dylib (281.3) /usr/lib/libspindump.dylib 0x7fff682bc000 - 0x7fff684a6ff7 libsqlite3.dylib (308.5) /usr/lib/libsqlite3.dylib 0x7fff6859a000 - 0x7fff685c7ffb libssl.46.dylib (47.140.1) /usr/lib/libssl.46.dylib 0x7fff6869c000 - 0x7fff686f6ff8 libusrtcp.dylib (1880.120.4) /usr/lib/libusrtcp.dylib 0x7fff686f7000 - 0x7fff686faffb libutil.dylib (57) /usr/lib/libutil.dylib 0x7fff686fb000 - 0x7fff68708ff7 libxar.1.dylib (425.2) /usr/lib/libxar.1.dylib 0x7fff6870e000 - 0x7fff687f0fff libxml2.2.dylib (33.5) /usr/lib/libxml2.2.dylib 0x7fff687f4000 - 0x7fff6881cfff libxslt.1.dylib (16.9) /usr/lib/libxslt.1.dylib 0x7fff6881d000 - 0x7fff6882fff3 libz.1.dylib (76) /usr/lib/libz.1.dylib 0x7fff690de000 - 0x7fff690e3ff3 libcache.dylib (83) /usr/lib/system/libcache.dylib 0x7fff690e4000 - 0x7fff690effff libcommonCrypto.dylib (60165.120.1) /usr/lib/system/libcommonCrypto.dylib 0x7fff690f0000 - 0x7fff690f7fff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib 0x7fff690f8000 - 0x7fff69101ff7 libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib 0x7fff69102000 - 0x7fff69194fdb libcorecrypto.dylib (866.140.1) /usr/lib/system/libcorecrypto.dylib 0x7fff692a1000 - 0x7fff692e1ff0 libdispatch.dylib (1173.100.2) /usr/lib/system/libdispatch.dylib 0x7fff692e2000 - 0x7fff69318fff libdyld.dylib (750.6) /usr/lib/system/libdyld.dylib 0x7fff69319000 - 0x7fff69319ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib 0x7fff6931a000 - 0x7fff69326ff3 libkxld.dylib (6153.141.2.2) /usr/lib/system/libkxld.dylib 0x7fff69327000 - 0x7fff69327ff7 liblaunch.dylib (1738.140.1) /usr/lib/system/liblaunch.dylib 0x7fff69328000 - 0x7fff6932dff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib 0x7fff6932e000 - 0x7fff69330ff3 libquarantine.dylib (110.40.3) /usr/lib/system/libquarantine.dylib 0x7fff69331000 - 0x7fff69332ff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib 0x7fff69333000 - 0x7fff6934aff3 libsystem_asl.dylib (377.60.2) /usr/lib/system/libsystem_asl.dylib 0x7fff6934b000 - 0x7fff6934bff7 libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib 0x7fff6934c000 - 0x7fff693d3fff libsystem_c.dylib (1353.100.2) /usr/lib/system/libsystem_c.dylib 0x7fff693d4000 - 0x7fff693d7ffb libsystem_configuration.dylib (1061.141.1) /usr/lib/system/libsystem_configuration.dylib 0x7fff693d8000 - 0x7fff693dbfff libsystem_coreservices.dylib (114) /usr/lib/system/libsystem_coreservices.dylib 0x7fff693dc000 - 0x7fff693e4fff libsystem_darwin.dylib (1353.100.2) /usr/lib/system/libsystem_darwin.dylib 0x7fff693e5000 - 0x7fff693ecfff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib 0x7fff693ed000 - 0x7fff693eeffb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib 0x7fff693ef000 - 0x7fff6943cff7 libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib 0x7fff6943d000 - 0x7fff69469ff7 libsystem_kernel.dylib (6153.141.2.2) /usr/lib/system/libsystem_kernel.dylib 0x7fff6946a000 - 0x7fff694b1fff libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib 0x7fff694b2000 - 0x7fff694d9fff libsystem_malloc.dylib (283.100.6) /usr/lib/system/libsystem_malloc.dylib 0x7fff694da000 - 0x7fff694e7ffb libsystem_networkextension.dylib (1095.140.2) /usr/lib/system/libsystem_networkextension.dylib 0x7fff694e8000 - 0x7fff694f1ff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib 0x7fff694f2000 - 0x7fff694fafef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib 0x7fff694fb000 - 0x7fff69505fff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib 0x7fff69506000 - 0x7fff6950aff3 libsystem_sandbox.dylib (1217.141.2) /usr/lib/system/libsystem_sandbox.dylib 0x7fff6950b000 - 0x7fff6950dfff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib 0x7fff6950e000 - 0x7fff69515ffb libsystem_symptoms.dylib (1238.120.1) /usr/lib/system/libsystem_symptoms.dylib 0x7fff69516000 - 0x7fff6952cff2 libsystem_trace.dylib (1147.120) /usr/lib/system/libsystem_trace.dylib 0x7fff6952e000 - 0x7fff69533ff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib 0x7fff69534000 - 0x7fff69569ffe libxpc.dylib (1738.140.1) /usr/lib/system/libxpc.dylib External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 2 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 23861 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=1.0G resident=0K(0%) swapped_out_or_unallocated=1.0G(100%) Writable regions: Total=1.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.1G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 512K 4 Activity Tracing 256K 1 CG backing stores 1600K 4 CG image 492K 37 CoreAnimation 5344K 82 CoreGraphics 8K 1 CoreImage 60K 9 CoreUI image data 4092K 41 Foundation 4K 1 Kernel Alloc Once 8K 1 MALLOC 322.7M 488 MALLOC guard page 32K 8 MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated) MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated) OpenGL GLSL 512K 6 PROTECTED_MEMORY 4K 1 STACK GUARD 120K 30 Stack 155.2M 31 Stack Guard 56.0M 1 VM_ALLOCATE 165.5M 395 VM_ALLOCATE (reserved) 128.0M 2 reserved VM address space (unallocated) __DATA 65.7M 618 __DATA_CONST 128K 6 __FONT_DATA 4K 1 __GLSLBUILTINS 5176K 1 __LINKEDIT 423.1M 191 __OBJC_RO 32.3M 1 __OBJC_RW 1908K 2 __TEXT 612.6M 564 __UNICODE 564K 1 mapped file 90.2M 40 shared memory 664K 21 =========== ======= ======= TOTAL 2.4G 2591 TOTAL, minus reserved VM space 1.9G 2591 Log: UCSF ChimeraX version: 1.1.1 (2020-10-07) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 ATI-3.10.18 OpenGL renderer: AMD Radeon Pro 455 OpenGL Engine OpenGL vendor: ATI Technologies Inc.Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro13,3 Processor Name: Quad-Core Intel Core i7 Processor Speed: 2.7 GHz Number of Processors: 1 Total Number of Cores: 4 L2 Cache (per Core): 256 KB L3 Cache: 8 MB Hyper-Threading Technology: Enabled Memory: 16 GB Boot ROM Version: 428.0.0.0.0 SMC Version (system): 2.38f11 Software: System Software Overview: System Version: macOS 10.15.7 (19H15) Kernel Version: Darwin 19.6.0 Time since boot: 22:57 Graphics/Displays: Intel HD Graphics 530: Chipset Model: Intel HD Graphics 530 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x191b Revision ID: 0x0006 Automatic Graphics Switching: Supported gMux Version: 4.0.29 [3.2.8] Metal: Supported, feature set macOS GPUFamily2 v1 Radeon Pro 455: Chipset Model: AMD Radeon Pro 455 Type: GPU Bus: PCIe PCIe Lane Width: x8 VRAM (Total): 2 GB Vendor: AMD (0x1002) Device ID: 0x67ef Revision ID: 0x00c7 ROM Revision: 113-C980AF-908 VBIOS Version: 113-C9801AP-028 EFI Driver Version: 01.A0.908 Automatic Graphics Switching: Supported gMux Version: 4.0.29 [3.2.8] Metal: Supported, feature set macOS GPUFamily2 v1 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2880 x 1800 Retina Framebuffer Depth: 24-Bit Color (ARGB8888) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal Thunderbolt Display: Display Type: LCD Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition) UI Looks like: 2560 x 1440 Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: C02QX0HBF2GC Mirror: Off Online: Yes Rotation: Supported Automatically Adjust Brightness: No Connection Type: Thunderbolt/DisplayPort PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.9 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 appnope: 0.1.0 Babel: 2.8.0 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2020.6.20 chardet: 3.0.4 ChimeraX-AddH: 2.1.3 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.1 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.6.1 ChimeraX-AtomSearch: 2.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 1.0.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.0 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.0 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.1 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.0 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-CommandLine: 1.1.3 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.1.1 ChimeraX-CoreFormats: 1.0 ChimeraX-coulombic: 1.0.1 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-DataFormats: 1.0 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.0 ChimeraX-Hbonds: 2.0 ChimeraX-Help: 1.0 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.0 ChimeraX-ImageFormats: 1.0 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0 ChimeraX-Label: 1.0 ChimeraX-ListInfo: 1.0 ChimeraX-Log: 1.1.1 ChimeraX-LookingGlass: 1.1 ChimeraX-Map: 1.0.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.0 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 1.1 ChimeraX-MDcrds: 2.0 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.0 ChimeraX-mmCIF: 2.2 ChimeraX-MMTF: 2.0 ChimeraX-Modeller: 1.0 ChimeraX-ModelPanel: 1.0 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.0 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0 ChimeraX-OpenCommand: 1.2.1 ChimeraX-PDB: 2.1 ChimeraX-PDBBio: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0 ChimeraX-PubChem: 2.0 ChimeraX-Read-Pbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.0 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.2 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SeqView: 2.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.0 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.0 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.0.4 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.0 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.0 ChimeraX-ToolshedUtils: 1.0 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.2.3 ChimeraX-uniprot: 2.0 ChimeraX-ViewDockX: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.3 comtypes: 1.1.7 cxservices: 1.0 cycler: 0.10.0 Cython: 0.29.20 decorator: 4.4.2 distlib: 0.3.1 docutils: 0.16 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 2.10.0 html2text: 2020.1.16 idna: 2.10 ihm: 0.16 imagecodecs: 2020.5.30 imagecodecs-lite: 2020.1.31 imagesize: 1.2.0 ipykernel: 5.3.0 ipython: 7.15.0 ipython-genutils: 0.2.0 jedi: 0.17.2 Jinja2: 2.11.2 jupyter-client: 6.1.3 jupyter-core: 4.6.3 kiwisolver: 1.2.0 line-profiler: 2.1.2 lxml: 4.5.1 MarkupSafe: 1.1.1 matplotlib: 3.2.1 msgpack: 1.0.0 netifaces: 0.10.9 networkx: 2.4 numexpr: 2.7.1 numpy: 1.18.5 numpydoc: 1.0.0 openvr: 1.12.501 packaging: 20.4 parso: 0.7.1 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 7.1.2 pip: 20.2.2 pkginfo: 1.5.0.1 prompt-toolkit: 3.0.7 psutil: 5.7.0 ptyprocess: 0.6.0 pycollada: 0.7.1 pydicom: 2.0.0 Pygments: 2.6.1 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.12.3 PyQt5-sip: 4.19.19 PyQtWebEngine-commercial: 5.12.1 python-dateutil: 2.8.1 pytz: 2020.1 pyzmq: 19.0.2 qtconsole: 4.7.4 QtPy: 1.9.0 RandomWords: 0.3.0 requests: 2.24.0 scipy: 1.4.1 setuptools: 49.4.0 sfftk-rw: 0.6.6.dev0 six: 1.15.0 snowballstemmer: 2.0.0 sortedcontainers: 2.2.2 Sphinx: 3.1.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 1.0.3 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.4 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2020.6.3 tinyarray: 1.2.2 tornado: 6.0.4 traitlets: 5.0.4 urllib3: 1.25.10 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.34.2 }}} " defect closed normal Window Toolkit nonchimerax all ChimeraX