id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 4229 IHM: cached zip file corrupted 1449177995@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.18362 ChimeraX Version: 1.1 (2020-09-09 22:22:27 UTC) Description (Describe the actions that caused this problem to occur here)I first tried to open with code ""open pdbdev:10"".And chimeraX signed""no response"".So I forced it stop.The next time I tried to open with""pdbdev:10"" and it warned ""BadZipFile"" error. And the"".cif"" files I downloaded from PDB-DEV cannot be seen in with the model. It says no atoms are there.The file is attached with this report. I don't know how can I fix these.Thank you for you help. Log: Startup Messages --- warning | Your computer has Intel graphics driver 7639 with a known bug that causes all Qt user interface panels to be blank. ChimeraX can partially fix this but may make some panel titlebars and edges black. Hopefully newer Intel graphics drivers will fix this. UCSF ChimeraX version: 1.1 (2020-09-09) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open C:\Users\14491/Desktop/PDBDEV_00000011.cif > open C:\Users\14491\Desktop\PDBDEV_00000011.cif format mmcif > open C:\Users\14491\Desktop\PDBDEV_00000011.cif format mmcif > open C:\Users\14491\Desktop\PDBDEV_00000011.cif format mmcif > open C:\Users\14491\Desktop\PDBDEV_00000011.cif format mmcif > open C:\Users\14491\Desktop\PDBDEV_00000011.cif format mmcif > set bgColor white > set bgColor black > lighting simple > lighting soft > set bgColor white > open C:\Users\14491/Desktop/PDBDEV_00000011.mmcif No such file/path: C:\Users\14491/Desktop/PDBDEV_00000011.mmcif > open C:\Users\14491/Desktop/PDBDEV_00000010.mmcif > open C:\Users\14491\Desktop\PDBDEV_00000010.mmcif format mmcif > set bgColor white > set bgColor black > open C:\Users\14491\Desktop\PDBDEV_00000010.mmcif format mmcif > open C:\Users\14491/Desktop/PDBDEV_00000010.cif light simple 'light' has no suffix > open C:\Users\14491/Desktop/PDBDEV_00000010.cif lighting simple 'lighting' has no suffix > open C:\Users\14491/Desktop/PDBDEV_00000010.cif > style stick Changed 0 atom styles > style sphere Changed 0 atom styles > style ball Changed 0 atom styles > open C:\Users\14491\Desktop\PDBDEV_00000010.cif format mmcif > open 2vdw Summary of feedback from opening 2vdw fetched from pdb --- warning | Unable to infer polymer connectivity due to unspecified label_seq_id for residue ""SAH"" near line 20490 notes | Fetching compressed mmCIF 2vdw from http://files.rcsb.org/download/2vdw.cif Fetching CCD SAH from http://ligand-expo.rcsb.org/reports/S/SAH/SAH.cif 2vdw title: Guanosine N7 methyl-transferase sub-complex (D1-D12) of the vaccinia virus mRNA capping enzyme [more info...] Chain information for 2vdw #1 --- Chain | Description A C E G | vaccinia virus capping enzyme D1 subunit B D F H | MRNA-capping enzyme small subunit Non-standard residues in 2vdw #1 --- SO4 — sulfate ion 2vdw mmCIF Assemblies --- 1| software_defined_assembly 2| author_and_software_defined_assembly 3| author_and_software_defined_assembly 4| author_and_software_defined_assembly > surface #! Expected an atoms specifier or a keyword > surface #1 > surface #2 No atoms specified by #2 > surface #0 No atoms specified by #0 > open pdbdev:1 Summary of feedback from opening 1 fetched from pdbdev --- warning | Could not open zip file C:\Users\14491\Downloads\ChimeraX\DOI\10.5281/zenodo.1218053\nup84-v1.0.3.zip Traceback (most recent call last): File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\cmd_line\tool.py"", line 275, in execute cmd.run(cmd_text) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 100, in cmd_open return Command(session, registry=registry).run(provider_cmd_text, log=log) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 128, in provider_open (session, ident, format_name, ignore_cache), provider_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 389, in collated_open return func(*func_args, **func_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\\__init__.py"", line 36, in fetch return fetch_ihm(session, ident, ignore_cache, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\fetch_ihm.py"", line 41, in fetch_ihm name = name, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\manager.py"", line 175, in open_data _add_models=False, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 154, in provider_open name or model_name_from_path(fi.file_name)), provider_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 390, in collated_open return func(*func_args, **func_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\\__init__.py"", line 25, in open return ihm.read_ihm(session, data, file_name, load_ensembles=ensembles, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 41, in read_ihm show_atom_crosslinks = show_atom_crosslinks) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 71, in __init__ stmodels, seqmodels = self.read_starting_models(load_linked_files) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 256, in read_starting_models cmodels = self.read_comparative_models() if load_linked_files else [] File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 348, in read_comparative_models models = d.models(self.session) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 1198, in models fs = finfo.stream(session) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 1045, in stream f = self._open_doi_file(session, self.file_path, mode, uncompress) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 1078, in _open_doi_file f = fetch_doi_archive_file(session, r.ref, r.url, file_path) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\doi_fetch.py"", line 118, in fetch_doi_archive_file zf = ZipFile(zip_path, 'r') File ""E:\ChimeraX 1.1\bin\lib\zipfile.py"", line 1258, in __init__ self._RealGetContents() File ""E:\ChimeraX 1.1\bin\lib\zipfile.py"", line 1325, in _RealGetContents raise BadZipFile(""File is not a zip file"") zipfile.BadZipFile: File is not a zip file zipfile.BadZipFile: File is not a zip file File ""E:\ChimeraX 1.1\bin\lib\zipfile.py"", line 1325, in _RealGetContents raise BadZipFile(""File is not a zip file"") See log for complete Python traceback. > open pdbdev:2 Summary of feedback from opening 2 fetched from pdbdev --- notes | Best scoring model Missing residues for 47 of 216 DSS crosslinks: /N:16,/N:29,/N:39,/N:44,/N:51... Best scoring model Missing residues for 47 of 216 DSS crosslinks: /N:16,/N:29,/N:39,/N:44,/N:51... Best scoring model Missing residues for 71 of 216 DSS crosslinks: /K:8,/K:16,/K:22,/K:46,/K:81... Best scoring model Missing residues for 71 of 216 DSS crosslinks: /K:8,/K:16,/K:22,/K:46,/K:81... aligned 4ifd J, 948 residues, rms 1.331 aligned 4ifd A, 300 residues, rms 1.265 aligned 4ifd H, 295 residues, rms 1.281 aligned 4ifd I, 230 residues, rms 1.271 aligned 4ifd F, 213 residues, rms 1.274 aligned 4ifd G, 236 residues, rms 1.264 aligned 4ifd E, 265 residues, rms 1.208 aligned 4ifd B, 242 residues, rms 1.313 aligned 4ifd D, 261 residues, rms 21.74 aligned 1gfl A, 372 residues, rms 34.29 aligned 4ifd C, 338 residues, rms 1.279 aligned 2hbj A, 587 residues, rms 58.74 aligned 4ifd K, 83 residues, rms 10.51 could not align aligned Ski7_3izq_modeller_vmd.pdb X to spheres, 0 matching residues Traceback (most recent call last): File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\cmd_line\tool.py"", line 275, in execute cmd.run(cmd_text) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 100, in cmd_open return Command(session, registry=registry).run(provider_cmd_text, log=log) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 128, in provider_open (session, ident, format_name, ignore_cache), provider_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 389, in collated_open return func(*func_args, **func_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\\__init__.py"", line 36, in fetch return fetch_ihm(session, ident, ignore_cache, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\fetch_ihm.py"", line 41, in fetch_ihm name = name, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\manager.py"", line 175, in open_data _add_models=False, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 154, in provider_open name or model_name_from_path(fi.file_name)), provider_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 390, in collated_open return func(*func_args, **func_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\\__init__.py"", line 25, in open return ihm.read_ihm(session, data, file_name, load_ensembles=ensembles, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 41, in read_ihm show_atom_crosslinks = show_atom_crosslinks) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 136, in __init__ self.localization_models = lmaps = self.read_localization_maps() File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 878, in read_localization_maps lmaps = self.read_ensemble_localization_maps() File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 898, in read_ensemble_localization_maps map_path = finfo.path(self.session) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 1137, in path dir = unzip_archive(session, r.ref, r.url) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\doi_fetch.py"", line 138, in unzip_archive zf = ZipFile(zip_path, 'r') File ""E:\ChimeraX 1.1\bin\lib\zipfile.py"", line 1258, in __init__ self._RealGetContents() File ""E:\ChimeraX 1.1\bin\lib\zipfile.py"", line 1325, in _RealGetContents raise BadZipFile(""File is not a zip file"") zipfile.BadZipFile: File is not a zip file zipfile.BadZipFile: File is not a zip file File ""E:\ChimeraX 1.1\bin\lib\zipfile.py"", line 1325, in _RealGetContents raise BadZipFile(""File is not a zip file"") See log for complete Python traceback. > open pdbdev:3 Summary of feedback from opening 3 fetched from pdbdev --- warning | Ignored bad PDB record found on line 2954 notes | Fetching IHM 00000003 from https://pdb- dev.wwpdb.org/cif/PDBDEV_00000003.cif Fetching compressed mmCIF 4gwp from http://files.rcsb.org/download/4gwp.cif Fetching zip 10.5281/zenodo.802915 mediator-v1.0.3.zip from https://zenodo.org/record/802915/files/mediator-v1.0.3.zip aligned 4gwp G, 170 residues, rms 0.6231 aligned 4gwp C, 184 residues, rms 0.7367 aligned 4gwp A, 112 residues, rms 0.5532 aligned 4gwp B, 492 residues, rms 0.613 aligned 4gwp E, 253 residues, rms 1.293 aligned 4gwp F, 209 residues, rms 1.249 aligned 4gwp D, 121 residues, rms 0.5711 aligned med7n_med31.pdb A, 73 residues, rms 1.328 aligned med7c_med21.pdb A, 95 residues, rms 1.367 aligned med7n_med31.pdb B, 92 residues, rms 1.356 aligned med7c_med21.pdb B, 127 residues, rms 1.269 aligned med4_med9.pdb D, 91 residues, rms 1.341 aligned med4_med9.pdb I, 85 residues, rms 1.421 aligned med16.NTD.phyre.model.pdb A, 361 residues, rms 1.363 Fetching zip 10.5281/zenodo.802915 cluster0.zip from https://zenodo.org/record/802915/files/cluster0.zip Fetching zip 10.5281/zenodo.802915 cluster1.zip from https://zenodo.org/record/802915/files/cluster1.zip Fetching zip 10.5281/zenodo.802915 cluster2.zip from https://zenodo.org/record/802915/files/cluster2.zip Fetching zip 10.5281/zenodo.802915 cluster3.zip from https://zenodo.org/record/802915/files/cluster3.zip Entities and chains for PDBDEV_00000003.cif --- Entity | Chains med1 | N med10 | M med11 | C med14 | O med15 | T med16 | U med17 | D med18 | E med19 | P med2 | Q med20 | F med21 | L med22 | G med3 | R med31 | K med4 | H med5 | S med6 | A med7 | I med8 | B med9 | J 4gwp G title: Structure of the Mediator Head Module from S. cerevisiae [more info...] 4gwp C title: Structure of the Mediator Head Module from S. cerevisiae [more info...] 4gwp A title: Structure of the Mediator Head Module from S. cerevisiae [more info...] 4gwp B title: Structure of the Mediator Head Module from S. cerevisiae [more info...] 4gwp E title: Structure of the Mediator Head Module from S. cerevisiae [more info...] 4gwp F title: Structure of the Mediator Head Module from S. cerevisiae [more info...] 4gwp D title: Structure of the Mediator Head Module from S. cerevisiae [more info...] med4_med9.pdb D title: MED4 AND MED9 STRUCTURE TAKEN FROM LARIVIERE ET AL, NUCLEIC ACIDS RESEARCH. 2013;41:9266-9273. DOI: 10.1093/nar/gkt704. THE MED10 STRUCTURE ALSO PROPOSED IN THAT WORK IS NOT USED IN THIS STUDY. [more info...] med7n_med31.pdb A title: MED7N and MED31 structures from PDB entry 3FBI, rotated and translated to align with the MED4-MED9 model [more info...] med7c_med21.pdb A title: MED7C and MED21 structures from PDB entry 1YKH, rotated and translated to align with the MED4-MED9 model [more info...] med4_med9.pdb I title: MED4 AND MED9 STRUCTURE TAKEN FROM LARIVIERE ET AL, NUCLEIC ACIDS RESEARCH. 2013;41:9266-9273. DOI: 10.1093/nar/gkt704. THE MED10 STRUCTURE ALSO PROPOSED IN THAT WORK IS NOT USED IN THIS STUDY. [more info...] med7n_med31.pdb B title: MED7N and MED31 structures from PDB entry 3FBI, rotated and translated to align with the MED4-MED9 model [more info...] med7c_med21.pdb B title: MED7C and MED21 structures from PDB entry 1YKH, rotated and translated to align with the MED4-MED9 model [more info...] Opened IHM file C:\Users\14491\Downloads\ChimeraX\PDBDev\PDBDEV_00000003.cif 11 xray and nmr models 3 comparative models 359 DSS crosslinks 2 electron microscopy images 4 sphere models 100 localization maps > close #1 > hide #!2.2 models > show #!2.2 models > hide #!2.2 models > hide #!2.1 models > show #!2.1 models > hide #!2.1 models > hide #!2.3 models > show #!2.3 models > show #!2.3.2 models > hide #!2.3.2 models > hide #!2.3.1 models > show #!2.3.1 models > hide #!2.2.3 models > hide #!2.2.2 models > hide #2.2.1 models > hide #!2.1.1 models > show #!2.1.1 models > close #2 > open pdbdev:10 Summary of feedback from opening 10 fetched from pdbdev --- warning | Could not open zip file C:\Users\14491\Downloads\ChimeraX\DOI\10.5281/zenodo.1194547\npc2018-master.zip Traceback (most recent call last): File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\cmd_line\tool.py"", line 275, in execute cmd.run(cmd_text) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 100, in cmd_open return Command(session, registry=registry).run(provider_cmd_text, log=log) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 128, in provider_open (session, ident, format_name, ignore_cache), provider_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 389, in collated_open return func(*func_args, **func_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\\__init__.py"", line 36, in fetch return fetch_ihm(session, ident, ignore_cache, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\fetch_ihm.py"", line 41, in fetch_ihm name = name, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\manager.py"", line 175, in open_data _add_models=False, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 154, in provider_open name or model_name_from_path(fi.file_name)), provider_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 390, in collated_open return func(*func_args, **func_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\\__init__.py"", line 25, in open return ihm.read_ihm(session, data, file_name, load_ensembles=ensembles, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 41, in read_ihm show_atom_crosslinks = show_atom_crosslinks) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 71, in __init__ stmodels, seqmodels = self.read_starting_models(load_linked_files) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 253, in read_starting_models xmodels = self.read_experimental_models() File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 298, in read_experimental_models models = d.models(self.session) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 1198, in models fs = finfo.stream(session) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 1045, in stream f = self._open_doi_file(session, self.file_path, mode, uncompress) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 1078, in _open_doi_file f = fetch_doi_archive_file(session, r.ref, r.url, file_path) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\doi_fetch.py"", line 118, in fetch_doi_archive_file zf = ZipFile(zip_path, 'r') File ""E:\ChimeraX 1.1\bin\lib\zipfile.py"", line 1258, in __init__ self._RealGetContents() File ""E:\ChimeraX 1.1\bin\lib\zipfile.py"", line 1325, in _RealGetContents raise BadZipFile(""File is not a zip file"") zipfile.BadZipFile: File is not a zip file zipfile.BadZipFile: File is not a zip file File ""E:\ChimeraX 1.1\bin\lib\zipfile.py"", line 1325, in _RealGetContents raise BadZipFile(""File is not a zip file"") See log for complete Python traceback. > open pdbdev:10 Summary of feedback from opening 10 fetched from pdbdev --- warning | Could not open zip file C:\Users\14491\Downloads\ChimeraX\DOI\10.5281/zenodo.1194547\npc2018-master.zip Traceback (most recent call last): File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\cmd_line\tool.py"", line 275, in execute cmd.run(cmd_text) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 100, in cmd_open return Command(session, registry=registry).run(provider_cmd_text, log=log) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 128, in provider_open (session, ident, format_name, ignore_cache), provider_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 389, in collated_open return func(*func_args, **func_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\\__init__.py"", line 36, in fetch return fetch_ihm(session, ident, ignore_cache, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\fetch_ihm.py"", line 41, in fetch_ihm name = name, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\manager.py"", line 175, in open_data _add_models=False, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 154, in provider_open name or model_name_from_path(fi.file_name)), provider_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 390, in collated_open return func(*func_args, **func_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\\__init__.py"", line 25, in open return ihm.read_ihm(session, data, file_name, load_ensembles=ensembles, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 41, in read_ihm show_atom_crosslinks = show_atom_crosslinks) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 71, in __init__ stmodels, seqmodels = self.read_starting_models(load_linked_files) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 253, in read_starting_models xmodels = self.read_experimental_models() File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 298, in read_experimental_models models = d.models(self.session) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 1198, in models fs = finfo.stream(session) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 1045, in stream f = self._open_doi_file(session, self.file_path, mode, uncompress) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 1078, in _open_doi_file f = fetch_doi_archive_file(session, r.ref, r.url, file_path) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\doi_fetch.py"", line 118, in fetch_doi_archive_file zf = ZipFile(zip_path, 'r') File ""E:\ChimeraX 1.1\bin\lib\zipfile.py"", line 1258, in __init__ self._RealGetContents() File ""E:\ChimeraX 1.1\bin\lib\zipfile.py"", line 1325, in _RealGetContents raise BadZipFile(""File is not a zip file"") zipfile.BadZipFile: File is not a zip file zipfile.BadZipFile: File is not a zip file File ""E:\ChimeraX 1.1\bin\lib\zipfile.py"", line 1325, in _RealGetContents raise BadZipFile(""File is not a zip file"") See log for complete Python traceback. > open pdbdev:10 Summary of feedback from opening 10 fetched from pdbdev --- warning | Could not open zip file C:\Users\14491\Downloads\ChimeraX\DOI\10.5281/zenodo.1194547\npc2018-master.zip Traceback (most recent call last): File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\cmd_line\tool.py"", line 275, in execute cmd.run(cmd_text) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 100, in cmd_open return Command(session, registry=registry).run(provider_cmd_text, log=log) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 128, in provider_open (session, ident, format_name, ignore_cache), provider_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 389, in collated_open return func(*func_args, **func_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\\__init__.py"", line 36, in fetch return fetch_ihm(session, ident, ignore_cache, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\fetch_ihm.py"", line 41, in fetch_ihm name = name, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\manager.py"", line 175, in open_data _add_models=False, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 154, in provider_open name or model_name_from_path(fi.file_name)), provider_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 390, in collated_open return func(*func_args, **func_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\\__init__.py"", line 25, in open return ihm.read_ihm(session, data, file_name, load_ensembles=ensembles, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 41, in read_ihm show_atom_crosslinks = show_atom_crosslinks) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 71, in __init__ stmodels, seqmodels = self.read_starting_models(load_linked_files) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 253, in read_starting_models xmodels = self.read_experimental_models() File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 298, in read_experimental_models models = d.models(self.session) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 1198, in models fs = finfo.stream(session) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 1045, in stream f = self._open_doi_file(session, self.file_path, mode, uncompress) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 1078, in _open_doi_file f = fetch_doi_archive_file(session, r.ref, r.url, file_path) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\doi_fetch.py"", line 118, in fetch_doi_archive_file zf = ZipFile(zip_path, 'r') File ""E:\ChimeraX 1.1\bin\lib\zipfile.py"", line 1258, in __init__ self._RealGetContents() File ""E:\ChimeraX 1.1\bin\lib\zipfile.py"", line 1325, in _RealGetContents raise BadZipFile(""File is not a zip file"") zipfile.BadZipFile: File is not a zip file zipfile.BadZipFile: File is not a zip file File ""E:\ChimeraX 1.1\bin\lib\zipfile.py"", line 1325, in _RealGetContents raise BadZipFile(""File is not a zip file"") See log for complete Python traceback. > open pdbdev:10 Summary of feedback from opening 10 fetched from pdbdev --- warning | Could not open zip file C:\Users\14491\Downloads\ChimeraX\DOI\10.5281/zenodo.1194547\npc2018-master.zip Traceback (most recent call last): File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\cmd_line\tool.py"", line 275, in execute cmd.run(cmd_text) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 100, in cmd_open return Command(session, registry=registry).run(provider_cmd_text, log=log) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 128, in provider_open (session, ident, format_name, ignore_cache), provider_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 389, in collated_open return func(*func_args, **func_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\\__init__.py"", line 36, in fetch return fetch_ihm(session, ident, ignore_cache, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\fetch_ihm.py"", line 41, in fetch_ihm name = name, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\manager.py"", line 175, in open_data _add_models=False, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 154, in provider_open name or model_name_from_path(fi.file_name)), provider_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 390, in collated_open return func(*func_args, **func_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\\__init__.py"", line 25, in open return ihm.read_ihm(session, data, file_name, load_ensembles=ensembles, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 41, in read_ihm show_atom_crosslinks = show_atom_crosslinks) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 71, in __init__ stmodels, seqmodels = self.read_starting_models(load_linked_files) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 253, in read_starting_models xmodels = self.read_experimental_models() File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 298, in read_experimental_models models = d.models(self.session) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 1198, in models fs = finfo.stream(session) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 1045, in stream f = self._open_doi_file(session, self.file_path, mode, uncompress) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 1078, in _open_doi_file f = fetch_doi_archive_file(session, r.ref, r.url, file_path) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\doi_fetch.py"", line 118, in fetch_doi_archive_file zf = ZipFile(zip_path, 'r') File ""E:\ChimeraX 1.1\bin\lib\zipfile.py"", line 1258, in __init__ self._RealGetContents() File ""E:\ChimeraX 1.1\bin\lib\zipfile.py"", line 1325, in _RealGetContents raise BadZipFile(""File is not a zip file"") zipfile.BadZipFile: File is not a zip file zipfile.BadZipFile: File is not a zip file File ""E:\ChimeraX 1.1\bin\lib\zipfile.py"", line 1325, in _RealGetContents raise BadZipFile(""File is not a zip file"") See log for complete Python traceback. > open pdbdev:10 Summary of feedback from opening 10 fetched from pdbdev --- warning | Could not open zip file C:\Users\14491\Downloads\ChimeraX\DOI\10.5281/zenodo.1194547\npc2018-master.zip Traceback (most recent call last): File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\cmd_line\tool.py"", line 275, in execute cmd.run(cmd_text) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 100, in cmd_open return Command(session, registry=registry).run(provider_cmd_text, log=log) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 128, in provider_open (session, ident, format_name, ignore_cache), provider_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 389, in collated_open return func(*func_args, **func_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\\__init__.py"", line 36, in fetch return fetch_ihm(session, ident, ignore_cache, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\fetch_ihm.py"", line 41, in fetch_ihm name = name, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\manager.py"", line 175, in open_data _add_models=False, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 154, in provider_open name or model_name_from_path(fi.file_name)), provider_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 390, in collated_open return func(*func_args, **func_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\\__init__.py"", line 25, in open return ihm.read_ihm(session, data, file_name, load_ensembles=ensembles, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 41, in read_ihm show_atom_crosslinks = show_atom_crosslinks) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 71, in __init__ stmodels, seqmodels = self.read_starting_models(load_linked_files) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 253, in read_starting_models xmodels = self.read_experimental_models() File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 298, in read_experimental_models models = d.models(self.session) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 1198, in models fs = finfo.stream(session) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 1045, in stream f = self._open_doi_file(session, self.file_path, mode, uncompress) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 1078, in _open_doi_file f = fetch_doi_archive_file(session, r.ref, r.url, file_path) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\doi_fetch.py"", line 118, in fetch_doi_archive_file zf = ZipFile(zip_path, 'r') File ""E:\ChimeraX 1.1\bin\lib\zipfile.py"", line 1258, in __init__ self._RealGetContents() File ""E:\ChimeraX 1.1\bin\lib\zipfile.py"", line 1325, in _RealGetContents raise BadZipFile(""File is not a zip file"") zipfile.BadZipFile: File is not a zip file zipfile.BadZipFile: File is not a zip file File ""E:\ChimeraX 1.1\bin\lib\zipfile.py"", line 1325, in _RealGetContents raise BadZipFile(""File is not a zip file"") See log for complete Python traceback. > open pdbdev:10 Summary of feedback from opening 10 fetched from pdbdev --- warning | Could not open zip file C:\Users\14491\Downloads\ChimeraX\DOI\10.5281/zenodo.1194547\npc2018-master.zip Traceback (most recent call last): File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\cmd_line\tool.py"", line 275, in execute cmd.run(cmd_text) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 100, in cmd_open return Command(session, registry=registry).run(provider_cmd_text, log=log) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 128, in provider_open (session, ident, format_name, ignore_cache), provider_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 389, in collated_open return func(*func_args, **func_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\\__init__.py"", line 36, in fetch return fetch_ihm(session, ident, ignore_cache, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\fetch_ihm.py"", line 41, in fetch_ihm name = name, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\manager.py"", line 175, in open_data _add_models=False, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 154, in provider_open name or model_name_from_path(fi.file_name)), provider_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 390, in collated_open return func(*func_args, **func_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\\__init__.py"", line 25, in open return ihm.read_ihm(session, data, file_name, load_ensembles=ensembles, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 41, in read_ihm show_atom_crosslinks = show_atom_crosslinks) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 71, in __init__ stmodels, seqmodels = self.read_starting_models(load_linked_files) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 253, in read_starting_models xmodels = self.read_experimental_models() File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 298, in read_experimental_models models = d.models(self.session) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 1198, in models fs = finfo.stream(session) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 1045, in stream f = self._open_doi_file(session, self.file_path, mode, uncompress) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 1078, in _open_doi_file f = fetch_doi_archive_file(session, r.ref, r.url, file_path) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\doi_fetch.py"", line 118, in fetch_doi_archive_file zf = ZipFile(zip_path, 'r') File ""E:\ChimeraX 1.1\bin\lib\zipfile.py"", line 1258, in __init__ self._RealGetContents() File ""E:\ChimeraX 1.1\bin\lib\zipfile.py"", line 1325, in _RealGetContents raise BadZipFile(""File is not a zip file"") zipfile.BadZipFile: File is not a zip file zipfile.BadZipFile: File is not a zip file File ""E:\ChimeraX 1.1\bin\lib\zipfile.py"", line 1325, in _RealGetContents raise BadZipFile(""File is not a zip file"") See log for complete Python traceback. > open pdbdev:10 Summary of feedback from opening 10 fetched from pdbdev --- warning | Could not open zip file C:\Users\14491\Downloads\ChimeraX\DOI\10.5281/zenodo.1194547\npc2018-master.zip Traceback (most recent call last): File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\cmd_line\tool.py"", line 275, in execute cmd.run(cmd_text) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 100, in cmd_open return Command(session, registry=registry).run(provider_cmd_text, log=log) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 128, in provider_open (session, ident, format_name, ignore_cache), provider_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 389, in collated_open return func(*func_args, **func_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\\__init__.py"", line 36, in fetch return fetch_ihm(session, ident, ignore_cache, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\fetch_ihm.py"", line 41, in fetch_ihm name = name, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\manager.py"", line 175, in open_data _add_models=False, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 154, in provider_open name or model_name_from_path(fi.file_name)), provider_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\open_command\cmd.py"", line 390, in collated_open return func(*func_args, **func_kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\\__init__.py"", line 25, in open return ihm.read_ihm(session, data, file_name, load_ensembles=ensembles, **kw) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 41, in read_ihm show_atom_crosslinks = show_atom_crosslinks) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 71, in __init__ stmodels, seqmodels = self.read_starting_models(load_linked_files) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 253, in read_starting_models xmodels = self.read_experimental_models() File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 298, in read_experimental_models models = d.models(self.session) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 1198, in models fs = finfo.stream(session) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 1045, in stream f = self._open_doi_file(session, self.file_path, mode, uncompress) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\ihm.py"", line 1078, in _open_doi_file f = fetch_doi_archive_file(session, r.ref, r.url, file_path) File ""E:\ChimeraX 1.1\bin\lib\site-packages\chimerax\ihm\doi_fetch.py"", line 118, in fetch_doi_archive_file zf = ZipFile(zip_path, 'r') File ""E:\ChimeraX 1.1\bin\lib\zipfile.py"", line 1258, in __init__ self._RealGetContents() File ""E:\ChimeraX 1.1\bin\lib\zipfile.py"", line 1325, in _RealGetContents raise BadZipFile(""File is not a zip file"") zipfile.BadZipFile: File is not a zip file zipfile.BadZipFile: File is not a zip file File ""E:\ChimeraX 1.1\bin\lib\zipfile.py"", line 1325, in _RealGetContents raise BadZipFile(""File is not a zip file"") See log for complete Python traceback. OpenGL version: 3.3.0 - Build 26.20.100.7639 OpenGL renderer: Intel(R) HD Graphics 620 OpenGL vendor: Intel Manufacturer: Microsoft Corporation Model: Surface Pro OS: Microsoft Windows 10 家庭版 (Build 18363) Memory: 8,507,518,976 MaxProcessMemory: 137,438,953,344 CPU: 4 Intel(R) Core(TM) i5-7300U CPU @ 2.60GHz"" PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.9 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 Babel: 2.8.0 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2020.6.20 chardet: 3.0.4 ChimeraX-AddH: 2.1.1 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.1 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.6.1 ChimeraX-AtomSearch: 2.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 1.0.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.0 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.0 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.1 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.0 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-CommandLine: 1.1.3 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.1 ChimeraX-CoreFormats: 1.0 ChimeraX-coulombic: 1.0.1 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-DataFormats: 1.0 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.0 ChimeraX-Hbonds: 2.0 ChimeraX-Help: 1.0 ChimeraX-HKCage: 1.0 ChimeraX-IHM: 1.0 ChimeraX-ImageFormats: 1.0 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0 ChimeraX-Label: 1.0 ChimeraX-ListInfo: 1.0 ChimeraX-Log: 1.1.1 ChimeraX-LookingGlass: 1.1 ChimeraX-Map: 1.0.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.0 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 1.1 ChimeraX-MDcrds: 2.0 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.0 ChimeraX-mmCIF: 2.2 ChimeraX-MMTF: 2.0 ChimeraX-Modeller: 1.0 ChimeraX-ModelPanel: 1.0 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.0 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0 ChimeraX-OpenCommand: 1.2.1 ChimeraX-PDB: 2.1 ChimeraX-PDBBio: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0 ChimeraX-PubChem: 2.0 ChimeraX-Read-Pbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.0 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.2 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SeqView: 2.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.0 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.0 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.0.4 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.0 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.0 ChimeraX-ToolshedUtils: 1.0 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.2.3 ChimeraX-uniprot: 2.0 ChimeraX-ViewDockX: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.3 comtypes: 1.1.7 cxservices: 1.0 cycler: 0.10.0 Cython: 0.29.20 decorator: 4.4.2 distlib: 0.3.1 docutils: 0.16 filelock: 3.0.12 funcparserlib: 0.3.6 gdcm: 2.8.8 grako: 3.16.5 h5py: 2.10.0 html2text: 2020.1.16 idna: 2.10 ihm: 0.16 imagecodecs: 2020.5.30 imagecodecs-lite: 2020.1.31 imagesize: 1.2.0 ipykernel: 5.3.0 ipython: 7.15.0 ipython-genutils: 0.2.0 jedi: 0.17.2 Jinja2: 2.11.2 jupyter-client: 6.1.3 jupyter-core: 4.6.3 kiwisolver: 1.2.0 line-profiler: 2.1.2 lxml: 4.5.1 MarkupSafe: 1.1.1 matplotlib: 3.2.1 msgpack: 1.0.0 netifaces: 0.10.9 networkx: 2.4 numexpr: 2.7.1 numpy: 1.18.5+mkl numpydoc: 1.0.0 openvr: 1.12.501 packaging: 20.4 parso: 0.7.1 pickleshare: 0.7.5 Pillow: 7.1.2 pip: 20.2.2 pkginfo: 1.5.0.1 prompt-toolkit: 3.0.7 psutil: 5.7.0 pycollada: 0.7.1 pydicom: 2.0.0 Pygments: 2.6.1 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.12.3 PyQt5-sip: 4.19.19 PyQtWebEngine-commercial: 5.12.1 python-dateutil: 2.8.1 pytz: 2020.1 pywin32: 228 pyzmq: 19.0.2 qtconsole: 4.7.4 QtPy: 1.9.0 RandomWords: 0.3.0 requests: 2.24.0 scipy: 1.4.1 setuptools: 49.4.0 sfftk-rw: 0.6.6.dev0 six: 1.15.0 snowballstemmer: 2.0.0 sortedcontainers: 2.2.2 Sphinx: 3.1.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 1.0.3 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.4 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2020.6.3 tinyarray: 1.2.2 tornado: 6.0.4 traitlets: 5.0.4 urllib3: 1.25.10 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.34.2 WMI: 1.5.1 File attachment: PDBDEV_00000010.cif }}} [attachment:""PDBDEV_00000010.cif""] " enhancement assigned normal Input/Output ben@… all ChimeraX