id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 4109 Save dialog: 'SaveModelOptionWidget' object has no attribute '_name' rmccool@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Darwin-19.6.0-x86_64-i386-64bit ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 1.0 (2020-06-04) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/McCool/Downloads/Bravo_J88.mrc Opened Bravo_J88.mrc, grid size 256,256,256, pixel 1.1, shown at level 0.491, step 1, values float32 > open /Users/McCool/Downloads/Bravo_J81.mrc Opened Bravo_J81.mrc, grid size 256,256,256, pixel 1.1, shown at level 0.484, step 1, values float32 > ui tool show ""Fit in Map"" Fit map Bravo_J88.mrc in map Bravo_J81.mrc using 167627 points correlation = 0.8204, correlation about mean = 0.2183, overlap = 5.858e+04 steps = 196, shift = 2.89, angle = 18.9 degrees Position of Bravo_J88.mrc (#1) relative to Bravo_J81.mrc (#2) coordinates: Matrix rotation and translation 0.98813351 -0.15261796 -0.01731843 23.69305365 0.15115652 0.94620821 0.28607995 -54.33813693 -0.02727410 -0.28530298 0.95804923 47.53184228 Axis -0.88286567 0.01538289 0.46937360 Axis point 0.00000000 134.04647501 215.17515702 Rotation angle (degrees) 18.88051287 Shift along axis 0.55653063 > ui mousemode right ""rotate selected models"" > select #2 2 models selected Fit map Bravo_J88.mrc in map Bravo_J81.mrc using 167627 points correlation = 0.8299, correlation about mean = 0.1671, overlap = 5.783e+04 steps = 184, shift = 12.7, angle = 20.6 degrees Position of Bravo_J88.mrc (#1) relative to Bravo_J81.mrc (#2) coordinates: Matrix rotation and translation 0.96870649 -0.00541559 0.24814997 -31.07524129 -0.20579217 0.54143111 0.81516988 -29.30994978 -0.13877074 -0.84072767 0.52337335 206.32060860 Axis -0.96707958 0.22596996 -0.11702421 Axis point 0.00000000 170.62164130 131.73948181 Rotation angle (degrees) 58.88513442 Shift along axis -0.71544344 Fit map Bravo_J88.mrc in map Bravo_J81.mrc using 167627 points correlation = 0.9467, correlation about mean = 0.6379, overlap = 8.485e+04 steps = 136, shift = 15.6, angle = 12.3 degrees Position of Bravo_J88.mrc (#1) relative to Bravo_J81.mrc (#2) coordinates: Matrix rotation and translation -0.93962018 -0.32097448 0.11869829 302.47293301 0.27342776 -0.91271481 -0.30362631 271.17368216 0.20579399 -0.25283800 0.94536859 14.15835586 Axis 0.08424109 -0.14446310 0.98591777 Axis point 129.40705354 160.29334248 0.00000000 Rotation angle (degrees) 162.45551671 Shift along axis 0.26503329 > open /Users/McCool/Downloads/Bravo_J80.mrc Opened Bravo_J80.mrc, grid size 256,256,256, pixel 1.1, shown at level 0.479, step 1, values float32 > hide #!1 models > hide #!2 models > hide #!3 models > show #!3 models > show #!2 models > select #3 2 models selected Fit map Bravo_J81.mrc in map Bravo_J80.mrc using 167727 points correlation = 0.808, correlation about mean = 0.3492, overlap = 6.032e+04 steps = 272, shift = 24.5, angle = 38.1 degrees Position of Bravo_J81.mrc (#2) relative to Bravo_J80.mrc (#3) coordinates: Matrix rotation and translation 0.28663616 -0.56476366 -0.77387448 284.60666935 0.38642874 0.80729958 -0.44602714 38.70884508 0.87664847 -0.17119984 0.44964217 -25.56052233 Axis 0.14278866 -0.85754203 0.49419941 Axis point 163.24582401 0.00000000 218.24439497 Rotation angle (degrees) 74.22925204 Shift along axis -5.18785116 Fit map Bravo_J81.mrc in map Bravo_J80.mrc using 167727 points correlation = 0.8064, correlation about mean = 0.2822, overlap = 6.129e+04 steps = 216, shift = 27.1, angle = 9.25 degrees Position of Bravo_J81.mrc (#2) relative to Bravo_J80.mrc (#3) coordinates: Matrix rotation and translation -0.99748816 -0.07050419 0.00682160 291.27131282 -0.06959469 0.99342055 0.09095154 1.92260813 -0.01318918 0.09024834 -0.99583196 258.52788608 Axis -0.03508327 0.99835375 0.04537574 Axis point 146.31786581 0.00000000 128.48895510 Rotation angle (degrees) 179.42577840 Shift along axis 3.43158786 > ui mousemode right ""translate selected models"" Fit map Bravo_J81.mrc in map Bravo_J80.mrc using 167727 points correlation = 0.8182, correlation about mean = 0.2751, overlap = 5.99e+04 steps = 612, shift = 9.24, angle = 94 degrees Position of Bravo_J81.mrc (#2) relative to Bravo_J80.mrc (#3) coordinates: Matrix rotation and translation 0.95227123 0.21596908 -0.21572400 2.37404380 0.25354410 -0.16607024 0.95296173 -5.99748691 0.16998493 -0.96217359 -0.21290160 277.59198602 Axis -0.98013451 -0.19739944 0.01923027 Axis point 0.00000000 110.75110020 140.94261792 Rotation angle (degrees) 102.31876114 Shift along axis 4.19518795 > ui mousemode right ""rotate selected models"" > ui mousemode right ""translate selected models"" Fit map Bravo_J81.mrc in map Bravo_J80.mrc using 167727 points correlation = 0.808, correlation about mean = 0.3491, overlap = 6.032e+04 steps = 276, shift = 6.92, angle = 36.1 degrees Position of Bravo_J81.mrc (#2) relative to Bravo_J80.mrc (#3) coordinates: Matrix rotation and translation 0.28661484 -0.56480255 -0.77385400 284.61936359 0.38640112 0.80728016 -0.44608621 38.70931041 0.87666761 -0.17116313 0.44961881 -25.57756601 Axis 0.14283708 -0.85753328 0.49420062 Axis point 163.26872702 -0.00000000 218.23997996 Rotation angle (degrees) 74.23116037 Shift along axis -5.18077107 > hide #!2 models > show #!1 models > ~select #3 Nothing selected > hide #!1 models > show #!1 models > select #1 2 models selected > ui mousemode right ""rotate selected models"" > ui mousemode right ""translate selected models"" Fit map Bravo_J88.mrc in map Bravo_J80.mrc using 167627 points correlation = 0.8233, correlation about mean = 0.1378, overlap = 6.363e+04 steps = 156, shift = 17.2, angle = 18.8 degrees Position of Bravo_J88.mrc (#1) relative to Bravo_J80.mrc (#3) coordinates: Matrix rotation and translation -0.81289873 0.51314960 0.27545077 145.86914891 -0.58130501 -0.74393674 -0.32960977 375.70995298 0.03577882 -0.42806028 0.90304168 68.92060558 Axis -0.08753435 0.21309721 -0.97310190 Axis point 129.25078279 172.32698700 0.00000000 Rotation angle (degrees) 145.78128174 Shift along axis 0.22740798 > show #!2 models > hide #!2 models > hide #!1 models > show #!2 models > hide #!2 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > ui mousemode right ""rotate selected models"" Fit map Bravo_J88.mrc in map Bravo_J80.mrc using 167627 points correlation = 0.8093, correlation about mean = 0.1316, overlap = 6.21e+04 steps = 436, shift = 17.6, angle = 76.1 degrees Position of Bravo_J88.mrc (#1) relative to Bravo_J80.mrc (#3) coordinates: Matrix rotation and translation 0.99032858 -0.05726468 -0.12637267 27.35509402 0.06974923 0.99286806 0.09668534 -22.02197078 0.11993473 -0.10456465 0.98725979 0.10255494 Axis -0.58760328 -0.71916049 0.37085116 Axis point 21.25412397 -0.00000000 213.91373868 Rotation angle (degrees) 9.86030012 Shift along axis -0.19857904 > hide #!1 models > show #!1 models > open /Users/McCool/Downloads/Bravo_J97.mrc Opened Bravo_J97.mrc, grid size 256,256,256, pixel 1.1, shown at level 0.511, step 1, values float32 > hide #!1 models > hide #!3 models > show #!2 models > ~select #1 Nothing selected > select #3 2 models selected > ~select #3 Nothing selected > select #4 2 models selected Fit map Bravo_J88.mrc in map Bravo_J80.mrc using 167627 points correlation = 0.8368, correlation about mean = 0.2914, overlap = 6.555e+04 steps = 468, shift = 30.5, angle = 44.2 degrees Position of Bravo_J88.mrc (#1) relative to Bravo_J80.mrc (#3) coordinates: Matrix rotation and translation 0.99491387 -0.09353017 -0.03739637 17.04215781 -0.03997032 -0.02579922 -0.99886774 292.35179100 0.09245947 0.99528212 -0.02940644 -4.94547889 Axis 0.99752830 -0.06495744 0.02679210 Axis point 0.00000000 149.10834450 139.41652448 Rotation angle (degrees) 91.72749413 Shift along axis -2.12288946 Fit map Bravo_J97.mrc in map Bravo_J81.mrc using 167746 points correlation = 0.8113, correlation about mean = 0.2465, overlap = 6.079e+04 steps = 296, shift = 36.6, angle = 37.8 degrees Position of Bravo_J97.mrc (#4) relative to Bravo_J81.mrc (#2) coordinates: Matrix rotation and translation -0.87828677 -0.47788129 -0.01555003 333.18931511 -0.47776588 0.87586960 0.06776573 78.64959836 -0.01876418 0.06694702 -0.99758007 264.72737916 Axis -0.24668952 0.96847046 0.03477431 Axis point 176.72484943 0.00000000 130.80861738 Rotation angle (degrees) 179.90492372 Shift along axis 3.18121397 > ui mousemode right ""translate selected models"" > ui mousemode right ""rotate selected models"" > ui mousemode right ""translate selected models"" > ui mousemode right ""rotate selected models"" > ui mousemode right ""translate selected models"" > ui mousemode right ""rotate selected models"" Fit map Bravo_J97.mrc in map Bravo_J81.mrc using 167746 points correlation = 0.8466, correlation about mean = 0.1731, overlap = 6.777e+04 steps = 152, shift = 12.5, angle = 16.6 degrees Position of Bravo_J97.mrc (#4) relative to Bravo_J81.mrc (#2) coordinates: Matrix rotation and translation -0.75709963 -0.65029379 0.06259485 329.47121729 0.65322663 -0.75210222 0.08739110 139.52871517 -0.00975216 0.10705239 0.99420554 -13.03174937 Axis 0.01505834 0.05540968 0.99835015 Axis point 138.87323752 131.42042346 0.00000000 Rotation angle (degrees) 139.24413470 Shift along axis -0.31771724 > hide #!2 models > show #!3 models Fit map Bravo_J80.mrc in map Bravo_J97.mrc using 167728 points correlation = 0.7976, correlation about mean = 0.2438, overlap = 5.989e+04 steps = 616, shift = 20.7, angle = 65.7 degrees Position of Bravo_J80.mrc (#3) relative to Bravo_J97.mrc (#4) coordinates: Matrix rotation and translation -0.99942371 -0.03243892 0.00999923 288.60071397 -0.01724718 0.23155196 -0.97266965 236.80723725 0.02923701 -0.97228156 -0.23197800 317.43822852 Axis 0.01583010 -0.78470478 0.61966750 Axis point 145.48661023 0.00000000 253.34651455 Rotation angle (degrees) 179.29765215 Shift along axis 15.45096013 > ~select #4 Nothing selected > select #3 2 models selected > ui mousemode right ""translate selected models"" Fit map Bravo_J80.mrc in map Bravo_J97.mrc using 167728 points correlation = 0.989, correlation about mean = 0.8838, overlap = 1.019e+05 steps = 192, shift = 7.83, angle = 31.3 degrees Position of Bravo_J80.mrc (#3) relative to Bravo_J97.mrc (#4) coordinates: Matrix rotation and translation -0.99944209 0.01364833 -0.03048382 284.44626173 -0.01029878 -0.99415696 -0.10745189 298.13263386 -0.03177224 -0.10707800 0.99374285 20.13455553 Axis 0.01558901 0.05371841 -0.99843443 Axis point 143.27551974 148.75381820 0.00000000 Rotation angle (degrees) 179.31287379 Shift along axis 0.34641349 > show #!2 models > hide #!2 models > ~select #3 Nothing selected > select #1 2 models selected > show #!1 models > hide #!3 models > ui mousemode right ""rotate selected models"" > ui mousemode right ""translate selected models"" Fit map Bravo_J88.mrc in map Bravo_J97.mrc using 167627 points correlation = 0.8483, correlation about mean = 0.3034, overlap = 6.893e+04 steps = 288, shift = 15, angle = 40.1 degrees Position of Bravo_J88.mrc (#1) relative to Bravo_J97.mrc (#4) coordinates: Matrix rotation and translation -0.99591160 0.08306983 -0.03548973 276.81164389 -0.04065414 -0.06132672 0.99728948 14.04843680 0.08066820 0.99465495 0.06445312 -16.95353624 Axis -0.01552217 -0.68438130 -0.72895905 Axis point 138.96494743 6.91233757 0.00000000 Rotation angle (degrees) 175.13182669 Shift along axis -1.55277221 > ui mousemode right ""rotate selected models"" Fit map Bravo_J88.mrc in map Bravo_J97.mrc using 167627 points correlation = 0.8483, correlation about mean = 0.3034, overlap = 6.893e+04 steps = 396, shift = 7.77, angle = 51.8 degrees Position of Bravo_J88.mrc (#1) relative to Bravo_J97.mrc (#4) coordinates: Matrix rotation and translation -0.99589464 0.08330242 -0.03542038 276.77800420 -0.04059790 -0.06130345 0.99729320 14.03250654 0.08090555 0.99463693 0.06443369 -16.99077729 Axis -0.01562781 -0.68438779 -0.72895070 Axis point 138.95002401 6.91127379 0.00000000 Rotation angle (degrees) 175.12481496 Shift along axis -1.54367036 > hide #!1 models > hide #!4 models > show #!3 models > show #!1 models > show #!2 models > hide #!3 models > ui mousemode right ""translate selected models"" Fit map Bravo_J88.mrc in map Bravo_J81.mrc using 167627 points correlation = 0.9467, correlation about mean = 0.6379, overlap = 8.485e+04 steps = 200, shift = 22.2, angle = 23.9 degrees Position of Bravo_J88.mrc (#1) relative to Bravo_J81.mrc (#2) coordinates: Matrix rotation and translation -0.93962936 -0.32091898 0.11877578 302.46203028 0.27337263 -0.91276024 -0.30353940 271.17735387 0.20582536 -0.25274448 0.94538678 14.12996793 Axis 0.08426815 -0.14441420 0.98592262 Axis point 129.40678447 160.28708257 0.00000000 Rotation angle (degrees) 162.45897745 Shift along axis 0.25711130 > show #!4 models > show #!3 models > hide #!3 models > hide #!2 models > hide #!1 models > show #!1 models > hide #!1 models > show #!2 models > hide #!2 models > show #!3 models > hide #!3 models > hide #!4 models > show #!4 models > ~select #1 Nothing selected > show #!3 models > show #!2 models > show #!1 models > hide #!4 models > hide #!2 models > hide #!1 models > open /Users/McCool/Downloads/Bravo_J107.mrc Opened Bravo_J107.mrc, grid size 256,256,256, pixel 1.1, shown at level 0.45, step 1, values float32 > select #5 2 models selected > ui mousemode right ""rotate selected models"" > ui mousemode right ""translate selected models"" > hide #!3 models > show #!2 models > ui mousemode right ""rotate selected models"" Fit map Bravo_J107.mrc in map Bravo_J81.mrc using 167639 points correlation = 0.9932, correlation about mean = 0.9337, overlap = 9.285e+04 steps = 156, shift = 11.2, angle = 21.7 degrees Position of Bravo_J107.mrc (#5) relative to Bravo_J81.mrc (#2) coordinates: Matrix rotation and translation 0.99998403 0.00115262 -0.00553288 0.65651726 -0.00113228 0.99999260 0.00367742 -0.34196373 0.00553708 -0.00367109 0.99997793 -0.22056161 Axis -0.54505930 -0.82108941 -0.16947727 Axis point 41.50485211 0.00000000 114.62874756 Rotation angle (degrees) 0.38623514 Shift along axis -0.03967787 > show #!3 models > show #!4 models > hide #!4 models > show #!4 models > hide #!4 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > show #!4 models > hide #!4 models > show #!4 models > ~select #5 Nothing selected > show #!1 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > hide #!4 models > show #!4 models > hide #!4 models > show #!4 models > hide #!4 models > show #!4 models > hide #!4 models > show #!4 models > hide #!4 models > show #!4 models > hide #!4 models > show #!4 models > hide #!4 models > show #!4 models > hide #!4 models > show #!4 models > hide #!4 models > show #!4 models > hide #!5 models > show #!5 models > hide #!5 models > show #!5 models > hide #!5 models > show #!5 models > hide #!5 models > show #!5 models > hide #!5 models > show #!5 models > hide #!4 models > hide #!2 models > hide #!1 models > show #!4 models > hide #!4 models > show #!4 models > hide #!4 models > show #!3 models > hide #!5 models > show #!5 models > hide #!5 models > show #!2 models > show #!4 models > hide #!3 models > show #!3 models > hide #!3 models > hide #!4 models Traceback (most recent call last): File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/ui/gui.py"", line 1541, in action.triggered.connect(lambda arg, cb = callback: cb()) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/dialog.py"", line 102, in lambda *args, ses=session: show_save_file_dialog(ses), tool_tip=""Save output file"", File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/dialog.py"", line 113, in show_save_file_dialog _dlg.display(session, **kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/dialog.py"", line 47, in display self._current_option) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/manager.py"", line 91, in save_args_string_from_widget provider_info.format_name, self).save_args_string_from_widget(widget) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/__init__.py"", line 188, in save_args_string_from_widget return widget.options_string() File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/options.py"", line 35, in options_string raise UserError(""No %s to save"" % self._name.lower()) AttributeError: 'SaveModelOptionWidget' object has no attribute '_name' AttributeError: 'SaveModelOptionWidget' object has no attribute '_name' File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/options.py"", line 35, in options_string raise UserError(""No %s to save"" % self._name.lower()) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/ui/gui.py"", line 1541, in action.triggered.connect(lambda arg, cb = callback: cb()) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/dialog.py"", line 102, in lambda *args, ses=session: show_save_file_dialog(ses), tool_tip=""Save output file"", File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/dialog.py"", line 113, in show_save_file_dialog _dlg.display(session, **kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/dialog.py"", line 47, in display self._current_option) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/manager.py"", line 91, in save_args_string_from_widget provider_info.format_name, self).save_args_string_from_widget(widget) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/map/__init__.py"", line 188, in save_args_string_from_widget return widget.options_string() File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/options.py"", line 35, in options_string raise UserError(""No %s to save"" % self._name.lower()) AttributeError: 'SaveModelOptionWidget' object has no attribute '_name' AttributeError: 'SaveModelOptionWidget' object has no attribute '_name' File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/options.py"", line 35, in options_string raise UserError(""No %s to save"" % self._name.lower()) See log for complete Python traceback. OpenGL version: 4.1 INTEL-14.7.8 OpenGL renderer: Intel(R) Iris(TM) Graphics 6100 OpenGL vendor: Intel Inc.Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro12,1 Processor Name: Dual-Core Intel Core i5 Processor Speed: 2.7 GHz Number of Processors: 1 Total Number of Cores: 2 L2 Cache (per Core): 256 KB L3 Cache: 3 MB Hyper-Threading Technology: Enabled Memory: 8 GB Boot ROM Version: 192.0.0.0.0 SMC Version (system): 2.28f7 Software: System Software Overview: System Version: macOS 10.15.7 (19H2) Kernel Version: Darwin 19.6.0 Time since boot: 43 days 18:57 Graphics/Displays: Intel Iris Graphics 6100: Chipset Model: Intel Iris Graphics 6100 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x162b Revision ID: 0x0009 Metal: Supported, feature set macOS GPUFamily1 v4 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Framebuffer Depth: 24-Bit Color (ARGB8888) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.8 }}} " defect closed normal Input/Output duplicate all ChimeraX