id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 3977 glDrawBuffer: invalid operation chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Linux-3.10.0-1160.6.1.el7.x86_64-x86_64-with-centos-7.9.2009-Core ChimeraX Version: 1.1 (2020-09-09 22:22:27 UTC) Description (Describe the actions that caused this problem to occur here) Log: Startup Errors --- error | Bundle 'ChimeraX-Registration' custom initialization failed warning | Traceback (most recent call last): File ""/c7/shared/chimerax/release/1.1-1.el7.x86_64/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/registration/nag.py"", line 266, in _strptime month = _months.index(month_name) ValueError: tuple.index(x): x not in tuple During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/c7/shared/chimerax/release/1.1-1.el7.x86_64/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 342, in initialize api._api_caller.initialize(api, session, self) File ""/c7/shared/chimerax/release/1.1-1.el7.x86_64/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/toolshed/__init__.py"", line 1265, in initialize return cls._get_func(api, ""initialize"")(session, bi) File ""/c7/shared/chimerax/release/1.1-1.el7.x86_64/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/registration/__init__.py"", line 41, in initialize nag(session) File ""/c7/shared/chimerax/release/1.1-1.el7.x86_64/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/registration/nag.py"", line 38, in nag _check_usage(session) File ""/c7/shared/chimerax/release/1.1-1.el7.x86_64/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/registration/nag.py"", line 192, in _check_usage usage = _get_usage() File ""/c7/shared/chimerax/release/1.1-1.el7.x86_64/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/registration/nag.py"", line 228, in _get_usage usage[""dates""].append(_strptime(value)) File ""/c7/shared/chimerax/release/1.1-1.el7.x86_64/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/registration/nag.py"", line 275, in _strptime raise ValueError(""time data does not match format"") ValueError: time data does not match format UCSF ChimeraX version: 1.1 (2020-09-09) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /c7/home/lchecaru/Downloads/5b6m.pdb format pdb 5b6m.pdb title: Crystal structure of human peroxiredoxin 6 In reduced state [more info...] Chain information for 5b6m.pdb #1 --- Chain | Description A B C D E F | peroxiredoxin-6 An error occurred in drawing the scene. Redrawing graphics is now stopped to avoid a continuous stream of error messages. To restart graphics use the command ""graphics restart"" after changing the settings that caused the error. Traceback (most recent call last): File ""/c7/shared/chimerax/release/1.1-1.el7.x86_64/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 73, in draw_new_frame view.draw(check_for_changes = False) File ""/c7/shared/chimerax/release/1.1-1.el7.x86_64/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 165, in draw self._draw_scene(camera, drawings) File ""/c7/shared/chimerax/release/1.1-1.el7.x86_64/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 201, in _draw_scene shadow, multishadow = self._compute_shadowmaps(opaque_drawings, transparent_drawings, camera) File ""/c7/shared/chimerax/release/1.1-1.el7.x86_64/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 581, in _compute_shadowmaps multishadow_enabled = r.multishadow.use_multishadow_map(shadow_drawings) File ""/c7/shared/chimerax/release/1.1-1.el7.x86_64/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/graphics/opengl.py"", line 1499, in use_multishadow_map self._start_rendering_multishadowmap(center, radius, size) File ""/c7/shared/chimerax/release/1.1-1.el7.x86_64/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/graphics/opengl.py"", line 1584, in _start_rendering_multishadowmap center, radius, size) File ""/c7/shared/chimerax/release/1.1-1.el7.x86_64/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/graphics/opengl.py"", line 1227, in start_depth_render if not fb.activate(): File ""/c7/shared/chimerax/release/1.1-1.el7.x86_64/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/graphics/opengl.py"", line 2178, in activate fbo = self.framebuffer_id File ""/c7/shared/chimerax/release/1.1-1.el7.x86_64/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/graphics/opengl.py"", line 2174, in framebuffer_id self._fbo = fbo = self._create_framebuffer() File ""/c7/shared/chimerax/release/1.1-1.el7.x86_64/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/graphics/opengl.py"", line 2011, in _create_framebuffer self.depth_texture or self._depth_rb) File ""/c7/shared/chimerax/release/1.1-1.el7.x86_64/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/graphics/opengl.py"", line 2038, in _create_fbo GL.glDrawBuffer(GL.GL_NONE) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1282, description = b'invalid operation', baseOperation = glDrawBuffer, cArguments = (GL_NONE,) ) Exception ignored in: Traceback (most recent call last): File ""/c7/shared/chimerax/release/1.1-1.el7.x86_64/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/graphics/opengl.py"", line 2088, in __del__ % self.name) chimerax.graphics.opengl.OpenGLError: OpenGL framebuffer ""depth map"" was not deleted before graphics.Framebuffer destroyed Exception ignored in: Traceback (most recent call last): File ""/c7/shared/chimerax/release/1.1-1.el7.x86_64/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/graphics/opengl.py"", line 2931, in __del__ raise OpenGLError('OpenGL texture was not deleted before graphics.Texture destroyed') chimerax.graphics.opengl.OpenGLError: OpenGL texture was not deleted before graphics.Texture destroyed OpenGL version: 3.3.0 NVIDIA 450.80.02 OpenGL renderer: Quadro RTX 6000/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Manufacturer: Dell Inc. Model: Precision 7920 Tower OS: CentOS Linux 7 Core Architecture: 64bit ELF CPU: 24 Intel(R) Xeon(R) Silver 4214 CPU @ 2.20GHz Cache Size: 16896 KB Memory: total used free shared buff/cache available Mem: 125G 9.2G 108G 192M 7.9G 115G Swap: 126G 0B 126G Graphics: d5:00.0 VGA compatible controller [0300]: NVIDIA Corporation TU102GL [Quadro RTX 6000/8000] [10de:1e30] (rev a1) Subsystem: Dell Device [1028:12ba] Kernel driver in use: nvidia PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.9 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 Babel: 2.8.0 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2020.6.20 chardet: 3.0.4 ChimeraX-AddH: 2.1.1 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.1 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.6.1 ChimeraX-AtomSearch: 2.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 1.0.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.0 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.0 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.1 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.0 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-CommandLine: 1.1.3 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.1 ChimeraX-CoreFormats: 1.0 ChimeraX-coulombic: 1.0.1 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-DataFormats: 1.0 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.0 ChimeraX-Hbonds: 2.0 ChimeraX-Help: 1.0 ChimeraX-HKCage: 1.0 ChimeraX-IHM: 1.0 ChimeraX-ImageFormats: 1.0 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0 ChimeraX-Label: 1.0 ChimeraX-LinuxSupport: 1.0 ChimeraX-ListInfo: 1.0 ChimeraX-Log: 1.1.1 ChimeraX-LookingGlass: 1.1 ChimeraX-Map: 1.0.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.0 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 1.1 ChimeraX-MDcrds: 2.0 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.0 ChimeraX-mmCIF: 2.2 ChimeraX-MMTF: 2.0 ChimeraX-Modeller: 1.0 ChimeraX-ModelPanel: 1.0 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.0 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0 ChimeraX-OpenCommand: 1.2.1 ChimeraX-PDB: 2.1 ChimeraX-PDBBio: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0 ChimeraX-PubChem: 2.0 ChimeraX-Read-Pbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.0 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.2 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SeqView: 2.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.0 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.0 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.0.4 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.0 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.0 ChimeraX-ToolshedUtils: 1.0 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.2.3 ChimeraX-uniprot: 2.0 ChimeraX-ViewDockX: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.3 comtypes: 1.1.7 cxservices: 1.0 cycler: 0.10.0 Cython: 0.29.20 decorator: 4.4.2 distlib: 0.3.1 distro: 1.5.0 docutils: 0.16 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 2.10.0 html2text: 2020.1.16 idna: 2.10 ihm: 0.16 imagecodecs: 2020.5.30 imagecodecs-lite: 2020.1.31 imagesize: 1.2.0 ipykernel: 5.3.0 ipython: 7.15.0 ipython-genutils: 0.2.0 jedi: 0.17.2 Jinja2: 2.11.2 jupyter-client: 6.1.3 jupyter-core: 4.6.3 kiwisolver: 1.2.0 line-profiler: 2.1.2 lxml: 4.5.1 MarkupSafe: 1.1.1 matplotlib: 3.2.1 msgpack: 1.0.0 netifaces: 0.10.9 networkx: 2.4 numexpr: 2.7.1 numpy: 1.18.5 numpydoc: 1.0.0 openvr: 1.12.501 packaging: 20.4 parso: 0.7.1 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 7.1.2 pip: 20.2.2 pkginfo: 1.5.0.1 prompt-toolkit: 3.0.7 psutil: 5.7.0 ptyprocess: 0.6.0 pycollada: 0.7.1 pydicom: 2.0.0 Pygments: 2.6.1 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.12.3 PyQt5-sip: 4.19.19 PyQtWebEngine-commercial: 5.12.1 python-dateutil: 2.8.1 pytz: 2020.1 pyzmq: 19.0.2 qtconsole: 4.7.4 QtPy: 1.9.0 RandomWords: 0.3.0 requests: 2.24.0 scipy: 1.4.1 setuptools: 49.4.0 sfftk-rw: 0.6.6.dev0 six: 1.15.0 snowballstemmer: 2.0.0 sortedcontainers: 2.2.2 Sphinx: 3.1.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 1.0.3 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.4 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2020.6.3 tinyarray: 1.2.2 tornado: 6.0.4 traitlets: 5.0.4 urllib3: 1.25.10 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.34.2 }}} " defect closed normal Graphics can't reproduce Greg Couch all ChimeraX