id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
3856	"Many ""Replacing opener..."" warnings for SEQROW"	Tom Goddard	Eric Pettersen	"I  bug report #3855 there apparently more than 30 warnings at startup about replacing SEQROW opener with one from SEQROW.  Not sure if this is a SEQROW problem, a toolshed problem, or an open command problem.


The following bug report has been submitted:
Platform:        macOS-10.15.7-x86_64-i386-64bit
ChimeraX Version: 1.2.dev202010200604 (2020-10-20 06:04:27 UTC)
Description
ModuleNotFoundError: No module named 'chimerax.surface.squaremesh'

after showing a molecular surface and using command ""surface squaremesh""

Log:
Startup Messages  
---  
warnings | Replacing opener for 'Gaussian input file' from SEQCROW bundle with
that from SEQCROW bundle  
Replacing opener for 'Gaussian output file' from SEQCROW bundle with that from
SEQCROW bundle  
Replacing opener for 'ORCA output file' from SEQCROW bundle with that from
SEQCROW bundle  
Replacing opener for 'Psi4 output file' from SEQCROW bundle with that from
SEQCROW bundle  
Replacing opener for 'XYZ file' from SEQCROW bundle with that from SEQCROW
bundle  
29 messages similar to the above omitted  
notes | Replacing data format 'Gaussian input file' as defined by SEQCROW
bundle with definition from SEQCROW bundle  
Replacing data format 'Gaussian output file' as defined by SEQCROW bundle with
definition from SEQCROW bundle  
Replacing data format 'ORCA output file' as defined by SEQCROW bundle with
definition from SEQCROW bundle  
Replacing data format 'Psi4 output file' as defined by SEQCROW bundle with
definition from SEQCROW bundle  
Replacing data format 'XYZ file' as defined by SEQCROW bundle with definition
from SEQCROW bundle  
27 messages similar to the above omitted  
  

> open /Users/meng/Desktop/startup.cxc

> alias reset view orient; view initial

> alias start tool show $1

> alias whereprefs info path user unversioned config

> alias captut open help:user/tutorials/binding-sites.html#cap-example

> alias previewts toolshed url https://cxtoolshed-
> preview.rbvi.ucsf.edu;toolshed reload available

> alias normalts toolshed url https://cxtoolshed.rbvi.ucsf.edu;toolshed reload
> available

executed startup.cxc  
UCSF ChimeraX version: 1.2.dev202010200604 (2020-10-20)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open 1mcy format mmcif fromDatabase pdb
"	defect	closed	major		Input/Output		fixed		Eric Pettersen Greg Couch				all	ChimeraX