id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
3696	ISOLDE color-picker problem	rjr27@…	Tristan Croll	"{{{
The following bug report has been submitted:
Platform:        Darwin-18.7.0-x86_64-i386-64bit
ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC)
Description
If I load a density map in ChimeraX and use the ISOLDE map colour button to change its colour, a colour picker pops up (looking like a box of coloured pencils). The first time I click OK after choosing a colour, nothing happens except the chosen colour changes to white.  The next time I click OK it applies the colour and the colour picker closes, whether or not I've rechosen the same colour or left it as white.  Clicking OK twice in a row, therefore, changes the map to white.

Log:
UCSF ChimeraX version: 1.0 (2020-06-04)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/randy/phaser/SAD/high_redundancy/3ot2/3ot2_on_XDS.pdb format pdb

3ot2_on_XDS.pdb title:  
Crystal structure of A putative nuclease belonging to DUF820 (ava_3926) from
anabaena variabilis ATCC 29413 At 1.96 A resolution [more info...]  
  
Chain information for 3ot2_on_XDS.pdb #1  
---  
Chain | Description  
A B | uncharacterized protein  
  
Non-standard residues in 3ot2_on_XDS.pdb #1  
---  
ACT — acetate ion  
BU1 — 1,4-butanediol  
CL — chloride ion  
EDO — 1,2-ethanediol (ethylene glycol)  
  

> select up

Nothing selected  

> select up

Nothing selected  

> select down

Nothing selected  

> select down

Nothing selected  

> select up

Nothing selected  

> cd ../phaser/SAD/high_redundancy/3ot2

Current working directory is: /Users/randy/phaser/SAD/high_redundancy/3ot2  

> open fobs_minus_fobs_18/3ot2_redundantSAD_fo_minus_fo_18.mtz structureModel
> #1

3ot2_on_XDS.pdb title:  
Crystal structure of A putative nuclease belonging to DUF820 (ava_3926) from
anabaena variabilis ATCC 29413 At 1.96 A resolution [more info...]  
  
Chain information for 3ot2_on_XDS.pdb  
---  
Chain | Description  
1.2/A 1.2/B | uncharacterized protein  
  
Non-standard residues in 3ot2_on_XDS.pdb #1.2  
---  
ACT — acetate ion  
BU1 — 1,4-butanediol  
CL — chloride ion  
EDO — 1,2-ethanediol (ethylene glycol)  
  
Opened crystallographic dataset from
fobs_minus_fobs_18/3ot2_redundantSAD_fo_minus_fo_18.mtz  
Generated maps:  
Reflection Data  
(STATIC) (dataset) FoFo, PHFc  
Any unwanted maps may be safely closed via the Model panel.  

> ui tool show ISOLDE

> set selectionWidth 4

Done loading forcefield  

> volume style mesh

> transparency 50

> volume style surface

> transparency 0

> transparency 50

> view #!1.1.1 clip false

No displayed objects specified.  




OpenGL version: 4.1 INTEL-12.10.22
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 650
OpenGL vendor: Intel Inc.Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro14,2
      Processor Name: Intel Core i7
      Processor Speed: 3.5 GHz
      Number of Processors: 1
      Total Number of Cores: 2
      L2 Cache (per Core): 256 KB
      L3 Cache: 4 MB
      Hyper-Threading Technology: Enabled
      Memory: 16 GB
      Boot ROM Version: 428.0.0.0.0
      SMC Version (system): 2.44f1

Software:

    System Software Overview:

      System Version: macOS 10.14.6 (18G6020)
      Kernel Version: Darwin 18.7.0
      Time since boot: 15 days 8:40

Graphics/Displays:

    Intel Iris Plus Graphics 650:

      Chipset Model: Intel Iris Plus Graphics 650
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x5927
      Revision ID: 0x0006
      Metal: Supported, feature set macOS GPUFamily2 v1
      Displays:
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 2560 x 1600 Retina
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Rotation: Supported
          Automatically Adjust Brightness: No
        DELL P2415Q:
          Resolution: 3840 x 2160 (2160p 4K UHD - Ultra High Definition)
          UI Looks like: 1920 x 1080 @ 60 Hz
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Display Serial Number: D8VXF9220LEB
          Mirror: Off
          Online: Yes
          Rotation: Supported
          Adapter Type: DisplayPort
          Automatically Adjust Brightness: No

PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.8

}}}
"	defect	closed	normal		Third Party		fixed		Tom Goddard Eric Pettersen				all	ChimeraX