id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 3563 Timeout launching Modeller job tonyelin@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Darwin-19.6.0-x86_64-i386-64bit ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC) Description I input 5 structures into my work file. After revealing their sequence alignment, I initiated the modeller comparative function. Log: UCSF ChimeraX version: 1.0 (2020-06-04) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX Some installed bundles are out of date. Please update the following bundles: * UI to version 1.2.1 (currently 1.0) * UI to version 1.2 (currently 1.0) > open ""/Users/tonylin/TMU/DYRK1A/Allosteric DYRK1A/Modeling > Structures/Templates/CMGC_DYRK1A_5A4E_T.pdb"" CMGC_DYRK1A_5A4E_T.pdb title: DYRK1A In complex with methoxy benzothiazole fragment [more info...] Chain information for CMGC_DYRK1A_5A4E_T.pdb #1 --- Chain | Description A | No description available Non-standard residues in CMGC_DYRK1A_5A4E_T.pdb #1 --- 7QQ — (7QQ) PTR — (PTR) > open ""/Users/tonylin/TMU/DYRK1A/Allosteric DYRK1A/Modeling > Structures/Templates/CMGC_MAPK14_3K3I_T.pdb"" CMGC_MAPK14_3K3I_T.pdb title: P38Α bound to novel DGF-out compound PF-00215955 [more info...] Chain information for CMGC_MAPK14_3K3I_T.pdb #2 --- Chain | Description A | No description available Non-standard residues in CMGC_MAPK14_3K3I_T.pdb #2 --- I46 — (I46) JZJ — (JZJ) > open ""/Users/tonylin/TMU/DYRK1A/Allosteric DYRK1A/Modeling > Structures/Templates/CMGC_MAPK14_4EHV_T.pdb"" CMGC_MAPK14_4EHV_T.pdb title: Human P38 map kinase In complex with Np-F10 and RL87 [more info...] Chain information for CMGC_MAPK14_4EHV_T.pdb #3 --- Chain | Description A | No description available Non-standard residues in CMGC_MAPK14_4EHV_T.pdb #3 --- 0SJ — (0SJ) IRG — (IRG) > open ""/Users/tonylin/TMU/DYRK1A/Allosteric DYRK1A/Modeling > Structures/Templates/CMGC_MAPK14_5N67_T.pdb"" CMGC_MAPK14_5N67_T.pdb title: Crystal structure of P38Α In complex with lipid pocket ligand 9L [more info...] Chain information for CMGC_MAPK14_5N67_T.pdb #4 --- Chain | Description A | No description available Non-standard residues in CMGC_MAPK14_5N67_T.pdb #4 --- 8ON — (8ON) > open ""/Users/tonylin/TMU/DYRK1A/Allosteric DYRK1A/Modeling > Structures/Templates/CMGC_MAPK14_5O8U_T.pdb"" CMGC_MAPK14_5O8U_T.pdb title: Covalent inhibitor 4B bound to the lipid pocket of P38Α mutant S252C [more info...] Chain information for CMGC_MAPK14_5O8U_T.pdb #5 --- Chain | Description A | No description available Non-standard residues in CMGC_MAPK14_5O8U_T.pdb #5 --- 9O5 — (9O5) > open ""/Users/tonylin/TMU/DYRK1A/Allosteric DYRK1A/Modeling > Structures/Templates/3K3I_Ligand.sdf"" > save ""/Users/tonylin/TMU/DYRK1A/Allosteric DYRK1A/Modeling > Structures/Chimera/Modeling_ChimeraX.cxs"" > ui tool show ""Modeller Comparative"" No alignments chosen for modeling > ui tool show ""Modeller Comparative"" > ui tool show ""Show Sequence Viewer"" > sequence chain #1/A Alignment identifier is 1.A > sequence chain #2/A Alignment identifier is 2.A > sequence chain #3/A Alignment identifier is 3.A > sequence chain #4/A Alignment identifier is 4.A > sequence chain #5/A Alignment identifier is 5.A > ui tool show ""Modeller Comparative"" > ui tool show ""Show Sequence Viewer"" > sequence chain #1/A Alignment identifier is 1.A > sequence chain #2/A Alignment identifier is 2.A > ui tool show ""Modeller Comparative"" > modeller comparative 1.A:1 multichain true numModels 5 fast false > hetPreserve true hydrogens true waterPreserve false > view clip false > hide #!5 models > hide #!4 models > hide #!3 models > hide #!2 models > hide #!1 models Traceback (most recent call last): File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py"", line 1319, in do_open encode_chunked=req.has_header('Transfer-encoding')) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 1252, in request self._send_request(method, url, body, headers, encode_chunked) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 1298, in _send_request self.endheaders(body, encode_chunked=encode_chunked) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 1247, in endheaders self._send_output(message_body, encode_chunked=encode_chunked) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 1026, in _send_output self.send(msg) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 966, in send self.connect() File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 938, in connect (self.host,self.port), self.timeout, self.source_address) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/socket.py"", line 728, in create_connection raise err File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/socket.py"", line 716, in create_connection sock.connect(sa) TimeoutError: [Errno 60] Operation timed out During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/tasks.py"", line 196, in _run_thread self.run(*args, **kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/tasks.py"", line 283, in run self.launch(*args, **kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/webservices/opal_job.py"", line 121, in launch self._suds = Client(self.service_url + ""?wsdl"") File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/suds/client.py"", line 115, in __init__ self.wsdl = reader.open(url) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/suds/reader.py"", line 150, in open d = self.fn(url, self.options) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/suds/wsdl.py"", line 136, in __init__ d = reader.open(url) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/suds/reader.py"", line 74, in open d = self.download(url) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/suds/reader.py"", line 92, in download fp = self.options.transport.open(Request(url)) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/suds/transport/https.py"", line 62, in open return HttpTransport.open(self, request) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/suds/transport/http.py"", line 67, in open return self.u2open(u2request) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/suds/transport/http.py"", line 132, in u2open return url.open(u2request, timeout=tm) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py"", line 525, in open response = self._open(req, data) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py"", line 543, in _open '_open', req) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py"", line 503, in _call_chain result = func(*args) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py"", line 1347, in http_open return self.do_open(http.client.HTTPConnection, req) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py"", line 1321, in do_open raise URLError(err) urllib.error.URLError: Exception in thread 1: urllib.error.URLError: File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py"", line 1321, in do_open raise URLError(err) See log for complete Python traceback. Modeller job ID None finished Traceback (most recent call last): File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/ui/gui.py"", line 604, in customEvent func(*args, **kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/modeller/comparative.py"", line 409, in on_finish err = self.get_file(""stderr.txt"") File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/webservices/opal_job.py"", line 258, in get_file url = self._status_url + '/' + filename TypeError: unsupported operand type(s) for +: 'NoneType' and 'str' TypeError: unsupported operand type(s) for +: 'NoneType' and 'str' File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/webservices/opal_job.py"", line 258, in get_file url = self._status_url + '/' + filename See log for complete Python traceback. > delete atoms #6 > delete bonds #6 > show #!1 models > show #!2 models > ui tool show ""Show Sequence Viewer"" > ui tool show ""Show Sequence Viewer"" > sequence chain #1/A Alignment identifier is 1.A > sequence chain #2/A Alignment identifier is 2.A > ui tool show ""Modeller Comparative"" > modeller comparative 1.A:1,2.A:1 multichain true numModels 5 fast false > hetPreserve true hydrogens true waterPreserve false Traceback (most recent call last): File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py"", line 1319, in do_open encode_chunked=req.has_header('Transfer-encoding')) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 1252, in request self._send_request(method, url, body, headers, encode_chunked) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 1298, in _send_request self.endheaders(body, encode_chunked=encode_chunked) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 1247, in endheaders self._send_output(message_body, encode_chunked=encode_chunked) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 1026, in _send_output self.send(msg) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 966, in send self.connect() File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 938, in connect (self.host,self.port), self.timeout, self.source_address) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/socket.py"", line 728, in create_connection raise err File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/socket.py"", line 716, in create_connection sock.connect(sa) TimeoutError: [Errno 60] Operation timed out During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/tasks.py"", line 196, in _run_thread self.run(*args, **kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/tasks.py"", line 283, in run self.launch(*args, **kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/webservices/opal_job.py"", line 121, in launch self._suds = Client(self.service_url + ""?wsdl"") File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/suds/client.py"", line 115, in __init__ self.wsdl = reader.open(url) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/suds/reader.py"", line 150, in open d = self.fn(url, self.options) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/suds/wsdl.py"", line 136, in __init__ d = reader.open(url) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/suds/reader.py"", line 74, in open d = self.download(url) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/suds/reader.py"", line 92, in download fp = self.options.transport.open(Request(url)) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/suds/transport/https.py"", line 62, in open return HttpTransport.open(self, request) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/suds/transport/http.py"", line 67, in open return self.u2open(u2request) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/suds/transport/http.py"", line 132, in u2open return url.open(u2request, timeout=tm) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py"", line 525, in open response = self._open(req, data) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py"", line 543, in _open '_open', req) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py"", line 503, in _call_chain result = func(*args) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py"", line 1347, in http_open return self.do_open(http.client.HTTPConnection, req) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py"", line 1321, in do_open raise URLError(err) urllib.error.URLError: Exception in thread 2: urllib.error.URLError: File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py"", line 1321, in do_open raise URLError(err) See log for complete Python traceback. Modeller job ID None finished Traceback (most recent call last): File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/ui/gui.py"", line 604, in customEvent func(*args, **kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/modeller/comparative.py"", line 409, in on_finish err = self.get_file(""stderr.txt"") File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/webservices/opal_job.py"", line 258, in get_file url = self._status_url + '/' + filename TypeError: unsupported operand type(s) for +: 'NoneType' and 'str' TypeError: unsupported operand type(s) for +: 'NoneType' and 'str' File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/webservices/opal_job.py"", line 258, in get_file url = self._status_url + '/' + filename See log for complete Python traceback. > ui tool show ""Modeller Comparative"" > modeller comparative 1.A:1,2.A:1 multichain true numModels 5 fast false > hetPreserve true hydrogens true waterPreserve false Traceback (most recent call last): File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py"", line 1319, in do_open encode_chunked=req.has_header('Transfer-encoding')) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 1252, in request self._send_request(method, url, body, headers, encode_chunked) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 1298, in _send_request self.endheaders(body, encode_chunked=encode_chunked) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 1247, in endheaders self._send_output(message_body, encode_chunked=encode_chunked) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 1026, in _send_output self.send(msg) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 966, in send self.connect() File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py"", line 938, in connect (self.host,self.port), self.timeout, self.source_address) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/socket.py"", line 728, in create_connection raise err File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/socket.py"", line 716, in create_connection sock.connect(sa) TimeoutError: [Errno 60] Operation timed out During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/tasks.py"", line 196, in _run_thread self.run(*args, **kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/tasks.py"", line 283, in run self.launch(*args, **kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/webservices/opal_job.py"", line 121, in launch self._suds = Client(self.service_url + ""?wsdl"") File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/suds/client.py"", line 115, in __init__ self.wsdl = reader.open(url) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/suds/reader.py"", line 150, in open d = self.fn(url, self.options) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/suds/wsdl.py"", line 136, in __init__ d = reader.open(url) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/suds/reader.py"", line 74, in open d = self.download(url) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/suds/reader.py"", line 92, in download fp = self.options.transport.open(Request(url)) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/suds/transport/https.py"", line 62, in open return HttpTransport.open(self, request) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/suds/transport/http.py"", line 67, in open return self.u2open(u2request) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/suds/transport/http.py"", line 132, in u2open return url.open(u2request, timeout=tm) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py"", line 525, in open response = self._open(req, data) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py"", line 543, in _open '_open', req) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py"", line 503, in _call_chain result = func(*args) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py"", line 1347, in http_open return self.do_open(http.client.HTTPConnection, req) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py"", line 1321, in do_open raise URLError(err) urllib.error.URLError: Exception in thread 3: urllib.error.URLError: File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py"", line 1321, in do_open raise URLError(err) See log for complete Python traceback. Modeller job ID None finished Traceback (most recent call last): File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/ui/gui.py"", line 604, in customEvent func(*args, **kw) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/modeller/comparative.py"", line 409, in on_finish err = self.get_file(""stderr.txt"") File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/webservices/opal_job.py"", line 258, in get_file url = self._status_url + '/' + filename TypeError: unsupported operand type(s) for +: 'NoneType' and 'str' TypeError: unsupported operand type(s) for +: 'NoneType' and 'str' File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/webservices/opal_job.py"", line 258, in get_file url = self._status_url + '/' + filename See log for complete Python traceback. OpenGL version: 4.1 INTEL-14.7.8 OpenGL renderer: Intel Iris OpenGL Engine OpenGL vendor: Intel Inc.Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro11,1 Processor Name: Dual-Core Intel Core i7 Processor Speed: 2.8 GHz Number of Processors: 1 Total Number of Cores: 2 L2 Cache (per Core): 256 KB L3 Cache: 4 MB Hyper-Threading Technology: Enabled Memory: 16 GB Boot ROM Version: 162.0.0.0.0 SMC Version (system): 2.16f68 Software: System Software Overview: System Version: macOS 10.15.6 (19G73) Kernel Version: Darwin 19.6.0 Time since boot: 3 days 7:42 Graphics/Displays: Intel Iris: Chipset Model: Intel Iris Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x0a2e Revision ID: 0x0009 Metal: Supported, feature set macOS GPUFamily1 v4 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Framebuffer Depth: 24-Bit Color (ARGB8888) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal BenQ EW2755ZH: Resolution: 1920 x 1080 (1080p FHD - Full High Definition) UI Looks like: 1920 x 1080 @ 60 Hz Framebuffer Depth: 24-Bit Color (ARGB8888) Display Serial Number: A7H00623SL0 Mirror: Off Online: Yes Rotation: Supported Automatically Adjust Brightness: No PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.8 }}} " defect closed normal Web Services fixed all ChimeraX