id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 3559 Map fitting: map is None chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.18362 ChimeraX Version: 0.92 (2020-02-23) Description Attempted to move model Log: UCSF ChimeraX version: 0.92 (2020-02-23) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""C:\Users\hp\Desktop\Maps\RELION tutorial - Beta Galactosidase > (2.81A)\postprocess_masked.mrc"" Opened postprocess_masked.mrc, grid size 256,256,256, pixel 1.24, shown at level 0.0197, step 1, values float32 > open ""C:\Users\hp\Desktop\Maps\RELION tutorial - Beta Galactosidase > (2.81A)\postprocess_masked.mrc"" Opened postprocess_masked.mrc, grid size 256,256,256, pixel 1.24, shown at level 0.0197, step 1, values float32 > close #2 > volume #1 level 0.02417 > volume #1 level 0.06998 > volume #1 level 0.04683 > vop zflip #1 Expected a density maps specifier or a keyword > select #1 2 models selected > vop zflip #1 Expected a density maps specifier or a keyword > vop zflip Expected a density maps specifier or a keyword > vop zflip #1 Expected a density maps specifier or a keyword > vop zflip #0 Expected a density maps specifier or a keyword > ~select #1 Nothing selected Expected a density maps specifier or a keyword > vop zflip #1 Expected a density maps specifier or a keyword > toolshed show ""Measure and Color Blobs"" > lighting soft > lighting full > lighting soft > lighting soft > lighting simple > lighting soft > set bgColor white > open ""C:\Users\hp\Desktop\Maps\RELION tutorial - Beta Galactosidase > (2.81A)\relion_locres (use for LocalRes).mrc"" Opened relion_locres (use for LocalRes).mrc, grid size 256,256,256, pixel 1.24, shown at level 35.4, step 1, values float32 > hide #!2 models > colour sample 1 map 2 palette red,1:yellow,2:green,3:,cyan,4:blue,5 Missing or invalid ""surfaces"" argument: invalid surfaces specifier > colour sample 1 map 2 palette 1,red:2,yellow:3,green:4,cyan:5,blue Missing or invalid ""surfaces"" argument: invalid surfaces specifier > colour sample #1 map #2 palette 1,red:2,yellow:3,green:4,cyan:5,blue Map values for surface ""surface"": minimum 2.705, mean 2.964, maximum 4.013 > volume #2 level 16.18 > volume #1 level 0.04387 > select #1 2 models selected Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > toolshed show ""Show Volume Menu"" > vop zflip #1 Expected a density maps specifier or a keyword > view orient > volume sel step 2 > volume sel step 1 > sop hidedust #1 Expected an atoms specifier or a keyword > sop hidedust map #1 Expected an atoms specifier or a keyword > volume sel style surface > toolshed show ""Basic Actions"" > sop hideDust map #1 Expected an atoms specifier or a keyword > lighting soft No atoms or bonds selected > view clip false > view clip false > view clip false > view clip false > view clip false > view clip false > ~select #1 Nothing selected Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > toolshed show ""Measure and Color Blobs"" > open ""C:\Users\hp\Desktop\Maps\RELION tutorial - Beta Galactosidase > (2.81A)\1jyn.cif"" 1jyn.cif title: E. COLI (lacZ) BETA-GALACTOSIDASE (E537Q) IN COMPLEX WITH LACTOSE [more info...] Chain information for 1jyn.cif #3 --- Chain | Description A B C D | Beta-Galactosidase Non-standard residues in 1jyn.cif #3 --- DMS — dimethyl sulfoxide LAT — β-lactose MG — magnesium ion NA — sodium ion Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > hide #!1 models > show #!1 models > ui mousemode rightMode ""translate selected models"" > hide #!1 models > show #!1 models > select #3 37534 atoms, 33852 bonds, 151 pseudobonds, 2 models selected Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > ui mousemode rightMode ""rotate selected models"" > select #1 2 models selected Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > select #3 37534 atoms, 33852 bonds, 151 pseudobonds, 2 models selected Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > ~select #3 Nothing selected Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > toolshed show ""Fit in Map"" Fit molecule 1jyn.cif (#3) to map postprocess_masked.mrc (#1) using 37534 atoms average map value = 0.01362, steps = 100 shifted from previous position = 6.2 rotated from previous position = 7.51 degrees atoms outside contour = 32896, contour level = 0.043874 Position of 1jyn.cif (#3) relative to postprocess_masked.mrc (#1) coordinates: Matrix rotation and translation 0.90969645 0.39870270 -0.11614020 169.18793775 0.32050167 -0.85191155 -0.41415632 154.37608942 -0.26406642 0.33953336 -0.90276577 156.29798096 Axis 0.97623144 0.19160435 -0.10129143 Axis point 0.00000000 42.64740907 99.27688721 Rotation angle (degrees) 157.29292393 Shift along axis 178.91406755 > vop zflip #1 Expected a density maps specifier or a keyword > select #3 37534 atoms, 33852 bonds, 151 pseudobonds, 2 models selected Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > ~select #3 Nothing selected Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > select #3 37534 atoms, 33852 bonds, 151 pseudobonds, 2 models selected Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > ~select #3 Nothing selected Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Fit molecule 1jyn.cif (#3) to map postprocess_masked.mrc (#1) using 37534 atoms average map value = 0.01521, steps = 76 shifted from previous position = 3.22 rotated from previous position = 1.32 degrees atoms outside contour = 32496, contour level = 0.043874 Position of 1jyn.cif (#3) relative to postprocess_masked.mrc (#1) coordinates: Matrix rotation and translation -0.91818163 -0.14642231 0.36810736 161.21860802 -0.16164793 0.98679065 -0.01068702 157.88853467 -0.36168007 -0.06931645 -0.92972190 150.41235687 Axis -0.08006237 0.99657299 -0.02079159 Axis point 101.54370336 0.00000000 60.43572325 Rotation angle (degrees) 158.52171927 Shift along axis 141.31259472 Unknown command: zflip #1 Expected a density maps specifier or a keyword > volume flip #1 axis z Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > volume flip #2 axis z Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > hide #!5 models Fit molecule 1jyn.cif (#3) to map postprocess_masked.mrc z flip (#4) using 37534 atoms average map value = 0.05979, steps = 100 shifted from previous position = 6.52 rotated from previous position = 10.1 degrees atoms outside contour = 12537, contour level = 0.043874 Position of 1jyn.cif (#3) relative to postprocess_masked.mrc z flip (#4) coordinates: Matrix rotation and translation -0.91045003 0.01123724 0.41346644 160.46408999 0.00547137 0.99987064 -0.01512663 162.54922245 -0.41358293 -0.01150985 -0.91039372 155.04665942 Axis 0.00437297 0.99996614 -0.00697138 Axis point 96.78003531 0.00000000 60.79930017 Rotation angle (degrees) 155.57267577 Shift along axis 162.16453334 Average map value = 0.05979 for 37534 atoms, 12537 outside contour > view clip false > transparency #4.1 50 Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > volume #4 level 0.03944 > movie record > turn y 2 180 > wait 180 > movie encode C:\Users\hp\Desktop\movie2.mp4 Movie saved to \C:Users\\...\Desktop\movie2.mp4 > hide #!3 models > volume #!4 style surface > volume #!4 style surface > volume #!4 style mesh > select #4 2 models selected Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > transparency sel 0 > volume sel style surface > colour sample #4 map #5 palette 1,red:2,yellow:3,green:4,cyan:5,blue Map values for surface ""surface"": minimum 2.705, mean 2.975, maximum 4.331 > movie record > turn y 2 180 > wait 180 > movie encode C:\Users\hp\Desktop\movie3.mp4 Movie saved to \C:Users\\...\Desktop\movie3.mp4 > show #!3 models > ~select #4 Nothing selected Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > ui mousemode rightMode ""translate selected models"" Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > hide #!4 models > show #!4 models > hide #!4 models > show #!4 models > hide #!4 models > show #!4 models > hide #!3 models > show #!3 models > hide #!4 models > show #!4 models > save C:\Users\hp\Desktop\image1.png supersample 3 > hide #!4 models > show #!4 models > volume #4 level 0.0419 > volume #4 level 0.0479 > volume #4 level 0.047 Average map value = 0.05979 for 37534 atoms, 13621 outside contour Fit molecule 1jyn.cif (#3) to map postprocess_masked.mrc z flip (#4) using 37534 atoms average map value = 0.05979, steps = 44 shifted from previous position = 0.0101 rotated from previous position = 0.00408 degrees atoms outside contour = 13612, contour level = 0.047 Position of 1jyn.cif (#3) relative to postprocess_masked.mrc z flip (#4) coordinates: Matrix rotation and translation -0.91044382 0.01123716 0.41348011 160.46333215 0.00549995 0.99987144 -0.01506311 162.55464539 -0.41359620 -0.01144003 -0.91038857 155.05554619 Axis 0.00438044 0.99996635 -0.00693650 Axis point 96.77999336 0.00000000 60.80053526 Rotation angle (degrees) 155.57183350 Shift along axis 162.17653190 Average map value = 0.05979 for 37534 atoms, 13612 outside contour Fit molecule 1jyn.cif (#3) to map postprocess_masked.mrc z flip (#4) using 37534 atoms average map value = 0.05979, steps = 44 shifted from previous position = 0.00325 rotated from previous position = 0.0103 degrees atoms outside contour = 13610, contour level = 0.047 Position of 1jyn.cif (#3) relative to postprocess_masked.mrc z flip (#4) coordinates: Matrix rotation and translation -0.91044612 0.01123734 0.41347504 160.46376572 0.00557420 0.99987347 -0.01490028 162.55395527 -0.41359015 -0.01126114 -0.91039355 155.05315571 Axis 0.00439991 0.99996688 -0.00684705 Axis point 96.77654397 0.00000000 60.79264422 Rotation angle (degrees) 155.57219706 Shift along axis 162.19294071 Fit molecule 1jyn.cif (#3) to map postprocess_masked.mrc z flip (#4) using 37534 atoms average map value = 0.05978, steps = 28 shifted from previous position = 0.0102 rotated from previous position = 0.0146 degrees atoms outside contour = 13618, contour level = 0.047 Position of 1jyn.cif (#3) relative to postprocess_masked.mrc z flip (#4) coordinates: Matrix rotation and translation -0.91044576 0.01124040 0.41347576 160.46316439 0.00547135 0.99987053 -0.01513402 162.55385419 -0.41359233 -0.01151647 -0.91038937 155.04211876 Axis 0.00437380 0.99996611 -0.00697506 Axis point 96.77949238 0.00000000 60.79703107 Rotation angle (degrees) 155.57208594 Shift along axis 162.16875049 Fit map 1jyn.cif map 5 in map postprocess_masked.mrc z flip using 140113 points correlation = 0.8113, correlation about mean = 0.764, overlap = 1695 steps = 40, shift = 0.026, angle = 0.0145 degrees Position of 1jyn.cif map 5 (#6) relative to postprocess_masked.mrc z flip (#4) coordinates: Matrix rotation and translation -0.91034965 0.01124419 0.41368721 160.46808275 0.00551379 0.99987166 -0.01504337 162.56247581 -0.41380326 -0.01141378 -0.91029480 155.06697625 Axis 0.00438612 0.99996640 -0.00692481 Axis point 96.79222600 0.00000000 60.79540867 Rotation angle (degrees) 155.55880252 Shift along axis 162.18703755 Average map value = 0.05979 for 37534 atoms, 13603 outside contour Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Fit map 1jyn.cif map 2.8 in map postprocess_masked.mrc z flip using 485253 points correlation = 0.8035, correlation about mean = 0.5174, overlap = 1.369e+04 steps = 40, shift = 0.00912, angle = 0.0125 degrees Position of 1jyn.cif map 2.8 (#6) relative to postprocess_masked.mrc z flip (#4) coordinates: Matrix rotation and translation -0.91043590 0.01120529 0.41349841 160.46295866 0.00545678 0.99987141 -0.01508055 162.55445132 -0.41361421 -0.01147354 -0.91037997 155.06799766 Axis 0.00436082 0.99996634 -0.00694987 Axis point 96.78379518 0.00000000 60.80670631 Rotation angle (degrees) 155.57069090 Shift along axis 162.17102784 Average map value = 0.05979 for 37534 atoms, 13611 outside contour Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Average map value = 0.05979 for 37534 atoms, 13611 outside contour Correlation = 0.8035, Correlation about mean = 0.5174, Overlap = 1.369e+04 Fit map 1jyn.cif map 2.8 in map postprocess_masked.mrc z flip using 485253 points correlation = 0.8035, correlation about mean = 0.5173, overlap = 1.369e+04 steps = 40, shift = 0.0182, angle = 0.0102 degrees Position of 1jyn.cif map 2.8 (#6) relative to postprocess_masked.mrc z flip (#4) coordinates: Matrix rotation and translation -0.91044200 0.01120373 0.41348503 160.46452156 0.00552919 0.99987346 -0.01491778 162.55262018 -0.41359983 -0.01129556 -0.91038873 155.05057045 Axis 0.00437935 0.99996688 -0.00686066 Axis point 96.77899198 0.00000000 60.79155517 Rotation angle (degrees) 155.57157827 Shift along axis 162.18621645 Average map value = 0.05979 for 37534 atoms, 13617 outside contour Average map value = 0.05979 for 37534 atoms, 13617 outside contour Correlation = 0.8035, Correlation about mean = 0.5173, Overlap = 1.369e+04 Average map value = 0.05979 for 37534 atoms, 13617 outside contour Correlation = 0.8035, Correlation about mean = 0.5173, Overlap = 1.369e+04 Average map value = 0.05979 for 37534 atoms, 13617 outside contour Correlation = 0.8035, Correlation about mean = 0.5173, Overlap = 1.369e+04 Average map value = 0.05979 for 37534 atoms, 13617 outside contour Correlation = 0.8035, Correlation about mean = 0.5173, Overlap = 1.369e+04 Average map value = 0.05979 for 37534 atoms, 13617 outside contour Correlation = 0.8035, Correlation about mean = 0.5173, Overlap = 1.369e+04 Average map value = 0.05979 for 37534 atoms, 13617 outside contour Correlation = 0.8035, Correlation about mean = 0.5173, Overlap = 1.369e+04 Fit map 1jyn.cif map 2.8 in map postprocess_masked.mrc z flip using 485253 points correlation = 0.8035, correlation about mean = 0.5174, overlap = 1.369e+04 steps = 44, shift = 0.00518, angle = 0.00954 degrees Position of 1jyn.cif map 2.8 (#6) relative to postprocess_masked.mrc z flip (#4) coordinates: Matrix rotation and translation -0.91044618 0.01118228 0.41347641 160.46250653 0.00544157 0.99987182 -0.01505906 162.55659347 -0.41359179 -0.01146054 -0.91039032 155.05181675 Axis 0.00435079 0.99996645 -0.00694080 Axis point 96.78146939 0.00000000 60.79878443 Rotation angle (degrees) 155.57209159 Shift along axis 162.17309422 Average map value = 0.05979 for 37534 atoms, 13610 outside contour Fit map 1jyn.cif map 2.8 in map postprocess_masked.mrc z flip using 485253 points correlation = 0.8035, correlation about mean = 0.5174, overlap = 1.369e+04 steps = 40, shift = 0.0222, angle = 0.00379 degrees Position of 1jyn.cif map 2.8 (#6) relative to postprocess_masked.mrc z flip (#4) coordinates: Matrix rotation and translation -0.91044479 0.01118125 0.41347951 160.46258800 0.00546791 0.99987259 -0.01499849 162.55709193 -0.41359451 -0.01139446 -0.91038991 155.07427871 Axis 0.00435742 0.99996665 -0.00690766 Axis point 96.78294858 0.00000000 60.80730708 Rotation angle (degrees) 155.57191349 Shift along axis 162.17967271 Average map value = 0.05979 for 37534 atoms, 13613 outside contour Fit map 1jyn.cif map 2.2 in map postprocess_masked.mrc z flip using 652061 points correlation = 0.7272, correlation about mean = 0.3047, overlap = 3.061e+04 steps = 44, shift = 0.0202, angle = 0.00518 degrees Position of 1jyn.cif map 2.2 (#6) relative to postprocess_masked.mrc z flip (#4) coordinates: Matrix rotation and translation -0.91045266 0.01122516 0.41346098 160.46331978 0.00547652 0.99987122 -0.01508627 162.55347667 -0.41357707 -0.01147104 -0.91039687 155.05407590 Axis 0.00437115 0.99996629 -0.00695065 Axis point 96.77997332 0.00000000 60.80165836 Rotation angle (degrees) 155.57303601 Shift along axis 162.17168010 Average map value = 0.05979 for 37534 atoms, 13612 outside contour Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png Could not create pixmap from \\\\\C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\icons\multi16.png > show #!6 models > hide #!3 models > hide #!4 models > volume #6 level 2.176 > close > open ""C:\Users\hp\Desktop\Maps\RELION tutorial - Beta Galactosidase > (2.81A)\1jyn.cif"" 1jyn.cif title: E. COLI (lacZ) BETA-GALACTOSIDASE (E537Q) IN COMPLEX WITH LACTOSE [more info...] Chain information for 1jyn.cif #1 --- Chain | Description A B C D | Beta-Galactosidase Non-standard residues in 1jyn.cif #1 --- DMS — dimethyl sulfoxide LAT — β-lactose MG — magnesium ion NA — sodium ion > open ""C:\Users\hp\Desktop\Maps\RELION tutorial - Beta Galactosidase > (2.81A)\postprocess_masked.mrc"" Opened postprocess_masked.mrc, grid size 256,256,256, pixel 1.24, shown at level 0.0197, step 1, values float32 > ui mousemode rightMode ""translate selected models"" > select #2 2 models selected Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. Expected a keyword > volume flip #2 axis z Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 300, in _model_moved xf = self._relative_position() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position AttributeError: 'NoneType' object has no attribute 'scene_position' Error processing trigger ""model position changed"": AttributeError: 'NoneType' object has no attribute 'scene_position' File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\map\fit\fitgui.py"", line 319, in _relative_position xfo = fmap.scene_position See log for complete Python traceback. OpenGL version: 3.3.13587 Core Profile Forward-Compatible Context 20.2.2 26.20.15019.19000 OpenGL renderer: AMD Radeon(TM) R5 Graphics OpenGL vendor: ATI Technologies Inc. }}} " defect closed normal Volume Data 0.92 fixed all ChimeraX