id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 3518 3D label: name 'session' is not defined j.r.lewandowski@… Greg Couch "{{{ The following bug report has been submitted: Platform: Darwin-18.7.0-x86_64-i386-64bit ChimeraX Version: 1.1.dev202007120755 (2020-07-12 07:55:44 UTC) Description Selected an atom and asked for the 3D label to be displayed. Log: UCSF ChimeraX version: 1.1.dev202007120755 (2020-07-12) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open 2qmt format mmcif fromDatabase pdb 2qmt title: Crystal Polymorphism of Protein GB1 Examined by Solid-state NMR and X-ray Diffraction [more info...] Chain information for 2qmt #1 --- Chain | Description A | Immunoglobulin G-binding protein G Non-standard residues in 2qmt #1 --- IPA — isopropyl alcohol (2-propanol) MRD — (4R)-2-methylpentane-2,4-diol PO4 — phosphate ion > select clear > select /A:102@O4 1 atom, 1 model selected > label sel atoms Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/ui/gui.py"", line 1238, in % text: run(ses, cmd % sel_or_all(ses, ['atoms'], allow_empty_spec=False))) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/run.py"", line 31, in run results = command.run(text, log=log) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/label/label3d.py"", line 119, in label lm.add_labels(mobjects, object_class, view, settings, on_top) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/label/label3d.py"", line 361, in add_labels ol[o] = lo = label_class(o, view, **settings) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/label/label3d.py"", line 773, in __init__ size=size, height=height, font=font) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/label/label3d.py"", line 619, in __init__ has_graphics = session.main_view.render is not None NameError: name 'session' is not defined NameError: name 'session' is not defined File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/label/label3d.py"", line 619, in __init__ has_graphics = session.main_view.render is not None See log for complete Python traceback. OpenGL version: 4.1 NVIDIA-12.0.24 355.11.10.50.10.103 OpenGL renderer: NVIDIA GeForce GT 750M OpenGL Engine OpenGL vendor: NVIDIA CorporationHardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro11,3 Processor Name: Intel Core i7 Processor Speed: 2.5 GHz Number of Processors: 1 Total Number of Cores: 4 L2 Cache (per Core): 256 KB L3 Cache: 6 MB Hyper-Threading Technology: Enabled Memory: 16 GB Boot ROM Version: 151.0.0.0.0 SMC Version (system): 2.19f12 Software: System Software Overview: System Version: macOS 10.14.6 (18G5033) Kernel Version: Darwin 18.7.0 Time since boot: 2 days 3:26 Graphics/Displays: Intel Iris Pro: Chipset Model: Intel Iris Pro Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x0d26 Revision ID: 0x0008 Automatic Graphics Switching: Supported gMux Version: 4.0.8 [3.2.8] Metal: Supported, feature set macOS GPUFamily1 v4 NVIDIA GeForce GT 750M: Chipset Model: NVIDIA GeForce GT 750M Type: GPU Bus: PCIe PCIe Lane Width: x8 VRAM (Total): 2 GB Vendor: NVIDIA (0x10de) Device ID: 0x0fe9 Revision ID: 0x00a2 ROM Revision: 3776 Automatic Graphics Switching: Supported gMux Version: 4.0.8 [3.2.8] Metal: Supported, feature set macOS GPUFamily1 v4 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2880 x 1800 Retina Framebuffer Depth: 24-Bit Color (ARGB8888) Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Automatically Adjust Brightness: No PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.9 }}} " defect closed normal Graphics fixed Tom Goddard all ChimeraX