id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 3505 UnicodeDecodeError reading ZINC .pdbqt file chimerax-bug-report@… Conrad Huang "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.18362 ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 1.0 (2020-06-04) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open C:/Dani/Drogaspalermo/cribado/87-1/10712022370/1_ZINC03873936.mol2 Summary of feedback from opening C:/Dani/Drogaspalermo/cribado/87-1/10712022370/1_ZINC03873936.mol2 --- warning | line 150: ignore unexpected line 'Score: 0' Opened 1_ZINC03873936.mol2 containing 1 structures (68 atoms, 72 bonds) > open C:/Dani/LiSiCa1/5f.mol2 Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\open_command\dialog.py"", line 150, in _qt_safe if data_format is None else "" format "" + StringArg.unparse(data_format.nicknames[0]))) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\run.py"", line 31, in run results = command.run(text, log=log) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 101, in cmd_open Command(session, registry=registry).run(provider_cmd_text, log=log) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 152, in provider_open name or model_name_from_path(fi.file_name)), provider_kw) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\open_command\cmd.py"", line 382, in collated_open return func(*func_args, **func_kw) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\viewdockx\\__init__.py"", line 56, in open return opener(session, data, file_name, True, True) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\viewdockx\io.py"", line 5, in open_mol2 p = Mol2Parser(session, stream, file_name, auto_style, atomic) File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\viewdockx\io.py"", line 78, in __init__ while self._read_section(): File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\viewdockx\io.py"", line 96, in _read_section self._get_line() # Consume section line File ""C:\Program Files\ChimeraX 1.0\bin\lib\site- packages\chimerax\viewdockx\io.py"", line 123, in _get_line line = self.stream.readline() File ""C:\Program Files\ChimeraX 1.0\bin\lib\encodings\cp1252.py"", line 23, in decode return codecs.charmap_decode(input,self.errors,decoding_table)[0] UnicodeDecodeError: 'charmap' codec can't decode byte 0x90 in position 3942: character maps to UnicodeDecodeError: 'charmap' codec can't decode byte 0x90 in position 3942: character maps to File ""C:\Program Files\ChimeraX 1.0\bin\lib\encodings\cp1252.py"", line 23, in decode return codecs.charmap_decode(input,self.errors,decoding_table)[0] See log for complete Python traceback. OpenGL version: 3.3.0 - Build 23.20.16.4973 OpenGL renderer: Intel(R) HD Graphics 620 OpenGL vendor: Intel Manufacturer: Dell Inc. Model: Inspiron 5567 OS: Microsoft Windows 10 Home Single Language (Build 18363) Memory: 8,483,733,504 MaxProcessMemory: 137,438,953,344 CPU: 4 Intel(R) Core(TM) i7-7500U CPU @ 2.70GHz"" PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.8 }}} " defect closed normal Surface/Binding Analysis fixed Eric Pettersen all ChimeraX