id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 3499 Save dialog: wrapped C/C++ object of type SaveOptionsWidget has been deleted eva.bertosin@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Darwin-18.7.0-x86_64-i386-64bit ChimeraX Version: 1.0 (2020-05-07) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 1.0rc202005070439 (2020-05-07) © 2016-2020 Regents of the University of California. All rights reserved. > open /Users/evabertosin/Desktop/M1.cxs Log from Sun Jul 12 13:44:33 2020UCSF ChimeraX version: 1.0rc202005070439 (2020-05-07) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/evabertosin/Dropbox (DIETZ LAB)/#EVA/#DOCUMENTS/#PROPELLER/06 > cryo/M1/M1_31/PostProcess/200525_PP_door1-2000/postprocess_masked.mrc"" Opened postprocess_masked.mrc, grid size 250,250,250, pixel 4.64, shown at level 1.95e-05, step 1, values float32 > volume #1 level 0.0629 > close #1 > open ""/Users/evabertosin/Dropbox (DIETZ LAB)/#EVA/#DOCUMENTS/#PROPELLER/06 > cryo/M1/M1_31/PostProcess/base.mrc"" /Users/evabertosin/Dropbox (DIETZ > LAB)/#EVA/#DOCUMENTS/#PROPELLER/06 cryo/M1/M1_31/PostProcess/door1.mrc > /Users/evabertosin/Dropbox (DIETZ LAB)/#EVA/#DOCUMENTS/#PROPELLER/06 > cryo/M1/M1_31/PostProcess/door2.mrc '/Users/evabertosin/Dropbox' has no suffix > open /Users/evabertosin/Desktop/base.mrc > /Users/evabertosin/Desktop/door1.mrc /Users/evabertosin/Desktop/door2.mrc Opened base.mrc, grid size 250,250,250, pixel 4.64, shown at level 7.15e-05, step 1, values float32 Opened door1.mrc, grid size 250,250,250, pixel 4.64, shown at level 1.95e-05, step 1, values float32 Opened door2.mrc, grid size 250,250,250, pixel 4.64, shown at level 6.13e-05, step 1, values float32 > volume #1 level 0.04477 > volume #2 level 0.08903 > volume #1 level 0.06938 > volume #1 style image > volume #1 style surface > volume #2 step 2 > volume #2 step 1 > volume #1 change image level 3.123e-05,0 level 0.06061,0.8 level 0.6058,1 > volume #1 level 0.1012 > volume #2 level 0.09493 > volume #3 level 0.01558 > lighting soft > set bgColor black > set bgColor white > volume #1 color #3764ab > volume #2 color #3764ab > volume #3 color #3764ab > save /Users/evabertosin/Desktop/M1.cxs opened ChimeraX session > save ""/Users/evabertosin/Desktop/M1 top.png"" width 651 height 867 > supersample 3 Traceback (most recent call last): File ""/Applications/ChimeraX-1.0-rc-2020.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/tool.py"", line 162, in callback bundle_info.run_provider(session, name, session.toolbar, display_name=display_name) File ""/Applications/ChimeraX-1.0-rc-2020.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 453, in run_provider return api._api_caller.run_provider(api, session, name, mgr, **kw) File ""/Applications/ChimeraX-1.0-rc-2020.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/toolshed/__init__.py"", line 1660, in run_provider return cls._get_func(api, ""run_provider"")(session, name, mgr, **kw) File ""/Applications/ChimeraX-1.0-rc-2020.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/__init__.py"", line 38, in run_provider providers.run_provider(session, name) File ""/Applications/ChimeraX-1.0-rc-2020.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/providers.py"", line 45, in run_provider what(session) File ""/Applications/ChimeraX-1.0-rc-2020.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/providers.py"", line 27, in _file_save show_save_file_dialog(session) File ""/Applications/ChimeraX-1.0-rc-2020.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/dialog.py"", line 122, in show_save_file_dialog _dlg.display(session, **kw) File ""/Applications/ChimeraX-1.0-rc-2020.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/dialog.py"", line 24, in display self._customize_dialog(session, dialog) File ""/Applications/ChimeraX-1.0-rc-2020.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/dialog.py"", line 86, in _customize_dialog self._format_selected(session, dialog) File ""/Applications/ChimeraX-1.0-rc-2020.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/dialog.py"", line 98, in _format_selected self._options_layout.addWidget(self._current_option) RuntimeError: wrapped C/C++ object of type SaveOptionsWidget has been deleted RuntimeError: wrapped C/C++ object of type SaveOptionsWidget has been deleted File ""/Applications/ChimeraX-1.0-rc-2020.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/dialog.py"", line 98, in _format_selected self._options_layout.addWidget(self._current_option) See log for complete Python traceback. OpenGL version: 4.1 INTEL-12.10.12 OpenGL renderer: Intel(R) Iris(TM) Graphics 6100 OpenGL vendor: Intel Inc.Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro12,1 Processor Name: Intel Core i5 Processor Speed: 2.9 GHz Number of Processors: 1 Total Number of Cores: 2 L2 Cache (per Core): 256 KB L3 Cache: 3 MB Hyper-Threading Technology: Enabled Memory: 16 GB Boot ROM Version: 186.0.0.0.0 SMC Version (system): 2.28f7 Software: System Software Overview: System Version: macOS 10.14.6 (18G95) Kernel Version: Darwin 18.7.0 Time since boot: 43 days 22:02 Graphics/Displays: Intel Iris Graphics 6100: Chipset Model: Intel Iris Graphics 6100 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x162b Revision ID: 0x0009 Metal: Supported, feature set macOS GPUFamily1 v4 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Framebuffer Depth: 24-Bit Color (ARGB8888) Mirror: Off Online: Yes Rotation: Supported Automatically Adjust Brightness: No DELL UP2716D: Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition) UI Looks like: 2560 x 1440 @ 60 Hz Framebuffer Depth: 24-Bit Color (ARGB8888) Display Serial Number: KRXTR73PA3UL Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Automatically Adjust Brightness: No }}} " defect closed normal Input/Output duplicate all ChimeraX