id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 3463 map jumps during mouse rotation / bad toolshed reporting rory.gordon.19@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Darwin-19.5.0-x86_64-i386-64bit ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC) Description left mouse button (settings, default) pressed down and rotating protein the map then jumps the inverse position (and opposite side of the protein). Log: UCSF ChimeraX version: 1.0 (2020-06-04) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX Some installed bundles are out of date. Please update the following bundles: * UI to version 1.2.1 (currently 1.0) * UI to version 1.2 (currently 1.0) > open ""/Users/rorygordon/Desktop/CYP158A1 LRET.3.pdb"" format pdb No such file/path: /Users/rorygordon/Desktop/CYP158A1 LRET.3.pdb > open ""/Users/rorygordon/Desktop/MRes Project/Reference Enzymes/CYP158A1 - > Streptomyces coellicolor/PDB/CYP158A1 - Biflaviolin.ent"" format pdb CYP158A1 - Biflaviolin.ent title: Structure and function studies of cytochrome P450 158A1 from streptomyces coelicolor A3(2) [more info...] Chain information for CYP158A1 - Biflaviolin.ent #1 --- Chain | Description A B | cytochrome P450 CYP158A1 Non-standard residues in CYP158A1 - Biflaviolin.ent #1 --- 226 — naphthalene-1,2,4,5,7-pentol HEM — protoporphyrin IX containing Fe (HEME) > select /B 3279 atoms, 3246 bonds, 6 pseudobonds, 2 models selected > delete atoms (#!1 & sel) > delete bonds (#!1 & sel) > select /A 3314 atoms, 3246 bonds, 6 pseudobonds, 2 models selected > show (#!1 & sel) target ab > select clear > ui tool show Distances > distance /A:291@NH1 /A:431@OAD Distance between /A ARG 291 NH1 and 226 431 OAD: 2.777Å Must select one or more distances in the table > select clear > select clear > distance /A:291@NE /A:292@OG1 Distance between /A ARG 291 NE and THR 292 OG1: 6.523Å > ~distance /A:291@NE /A:292@OG1 > cartoon hide sel > select /A 3314 atoms, 3246 bonds, 7 pseudobonds, 3 models selected > cartoon hide (#!1 & sel) > select clear > distance /A:291@NE /A:292@O Distance between /A ARG 291 NE and THR 292 O: 2.987Å > distance /A:292@OG1 /A:293@N Distance between /A THR 292 OG1 and SER 293 N: 3.066Å > distance /A:19@CZ2 /A:293@N Distance between /A TRP 19 CZ2 and SER 293 N: 4.375Å > ~distance /A:292@OG1 /A:293@N > select clear > distance /A:290@NE2 /A:431@OAA Distance between /A HIS 290 NE2 and 226 431 OAA: 3.123Å > distance /A:290@O /A:290@CD2 Distance between /A HIS 290 O and CD2: 3.721Å > ~distance /A:290@O /A:290@CD2 > distance /A:252@OD1 /A:290@ND1 Distance between /A ASN 252 OD1 and HIS 290 ND1: 3.248Å > distance /A:252@OD1 /A:255@NE2 Distance between /A ASN 252 OD1 and GLN 255 NE2: 5.830Å > distance /A:255@OE1 /A:255@NE2 Distance between /A GLN 255 OE1 and NE2: 2.244Å > distance /A:255@OE1 /A:391@CH2 Distance between /A GLN 255 OE1 and TRP 391 CH2: 4.305Å > select clear > distance /A:290@O /A:290@ND1 Distance between /A HIS 290 O and ND1: 3.414Å > distance /A:255@NE2 /A:290@O Distance between /A GLN 255 NE2 and HIS 290 O: 4.293Å > distance /A:290@O /A:398@NE Distance between /A HIS 290 O and ARG 398 NE: 5.786Å > ~distance /A:19@CZ2 /A:293@N > ~distance /A:290@O /A:398@NE OpenGL version: 4.1 INTEL-14.6.18 OpenGL renderer: Intel HD Graphics 5000 OpenGL Engine OpenGL vendor: Intel Inc.Hardware: Hardware Overview: Model Name: MacBook Air Model Identifier: MacBookAir6,2 Processor Name: Dual-Core Intel Core i5 Processor Speed: 1.4 GHz Number of Processors: 1 Total Number of Cores: 2 L2 Cache (per Core): 256 KB L3 Cache: 3 MB Hyper-Threading Technology: Enabled Memory: 4 GB Boot ROM Version: 121.0.0.0.0 SMC Version (system): 2.13f15 Software: System Software Overview: System Version: macOS 10.15.5 (19F101) Kernel Version: Darwin 19.5.0 Time since boot: 1 day 1:50 Graphics/Displays: Intel HD Graphics 5000: Chipset Model: Intel HD Graphics 5000 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x0a26 Revision ID: 0x0009 Metal: Supported, feature set macOS GPUFamily1 v4 Displays: Color LCD: Display Type: LCD Resolution: 1440 x 900 (Widescreen eXtended Graphics Array Plus) UI Looks like: 1440 x 900 Framebuffer Depth: 24-Bit Color (ARGB8888) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.8 }}} " defect closed normal General Controls fixed chimera-staff all ChimeraX