id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
3398	debugging output logged	goddard@…	Eric Pettersen	"{{{
The following bug report has been submitted:
Platform:        Windows-10-10.0.18362
ChimeraX Version: 1.1.dev202006141623 (2020-06-14 16:23:47 UTC)
Description
Opening a file writes some debugging info to the log ""open names ...""


Log:
UCSF ChimeraX version: 1.1.dev202006141623 (2020-06-14)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open 4hus format mmcif fromDatabase pdb

4hus title:  
Crystal structure of streptogramin group A antibiotic acetyltransferase VatA
from Staphylococcus aureus in complex with virginiamycin M1 [more info...]  
  
Chain information for 4hus #1  
---  
Chain | Description  
A B C | Virginiamycin A acetyltransferase  
  
Non-standard residues in 4hus #1  
---  
CL — chloride ion  
EDO — 1,2-ethanediol (ethylene glycol)  
NA — sodium ion  
PEG — di(hydroxyethyl)ether  
PGE — triethylene glycol  
SO4 — sulfate ion  
VIR — virginiamycin M1  
  
open names [format _one of 'aln', 'amira', 'apbs', 'bild', 'brix', 'ccd',
'ccp4', 'cellpack', 'cmap', 'cmd', 'collada', 'compiled python', 'cube',
'dcd', 'delphi', 'dicom', 'dock', 'dsn6', 'dv', 'emanhdf', 'fasta', 'fsc',
'gltf', 'gopenmol', 'hdf', 'hssp', 'html', 'ihm', 'images', 'imagic',
'imodmap', 'ims', 'macmolplt', 'markers', 'mmcif', 'mmtf', 'mol2', 'mrc',
'msf', 'netcdf', 'obj', 'pdb', 'pdbqt', 'pfam', 'pif', 'pir', 'priism',
'profec', 'pseudobonds', 'python', 'rsf', 'sdf', 'segger', 'session', 'situs',
'smiles', 'spider', 'stl', 'stockholm', 'storm', 'tom_em', 'trr', 'uhbd',
'uniprot', 'vtk', 'web fetch', 'xplor', or 'xtc'_] [fromDatabase _one of
'ccd', 'cellPACK', 'eds', 'edsdiff', 'emdb', 'ftp', 'help', 'http', 'https',
'pdb', 'pdbdev', 'pdbe', 'pdbj', 'pubchem', 'smiles', or 'uniprot'_]
[ignoreCache _true or false_] [name _a text string_] [atomic _true or false_]
[autoStyle _true or false_] [combineSymAtoms _true or false_] [coordsets _true
or false_] [logInfo _true or false_] [maxModels _an integer_] [oversampling _a
number_] [structureFactors _true or false_] -- read and display data  
names: file names to open; a name of 'browse' will bring up a file browser  




OpenGL version: 3.3.0 NVIDIA 442.19
OpenGL renderer: GeForce GTX 1080 Ti/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Gigabyte Technology Co., Ltd.
Model: Z270X-Gaming K7
OS: Microsoft Windows 10 Home (Build 18362)
Memory: 17,129,693,184
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i7-7700K CPU @ 4.20GHz""
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.8

}}}
"	defect	closed	normal		Input/Output		fixed						all	ChimeraX