id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 3375 Toolshed uninstall failure Eric Pettersen Greg Couch "{{{ The following bug report has been submitted: Platform: Darwin-18.7.0-x86_64-i386-64bit ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC) Description I installed Help-1.1 into Chimera 1.0, then I tried to uninstall it. Log: UCSF ChimeraX version: 1.0 (2020-06-04) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > toolshed uninstall Help Traceback (most recent call last): File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/distlib/metadata.py"", line 732, in __init__ self._data = json.loads(data) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/json/__init__.py"", line 348, in loads return _default_decoder.decode(s) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/json/decoder.py"", line 337, in decode obj, end = self.raw_decode(s, idx=_w(s, 0).end()) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/json/decoder.py"", line 355, in raw_decode raise JSONDecodeError(""Expecting value"", s, err.value) from None json.decoder.JSONDecodeError: Expecting value: line 1 column 1 (char 0) During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/cmd_line/tool.py"", line 258, in execute cmd.run(cmd_text) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2805, in run result = ci.function(session, **kw_args) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/toolshed.py"", line 286, in toolshed_uninstall deps = bi.dependents(logger) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 571, in dependents for d in DistributionPath().get_distributions(): File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/distlib/database.py"", line 213, in get_distributions self._generate_cache() File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/distlib/database.py"", line 167, in _generate_cache for dist in self._yield_distributions(): File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/distlib/database.py"", line 148, in _yield_distributions metadata = Metadata(fileobj=stream, scheme='legacy') File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/distlib/metadata.py"", line 742, in __init__ scheme=scheme) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/distlib/metadata.py"", line 285, in __init__ self.read_file(fileobj) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/distlib/metadata.py"", line 383, in read_file self.set(field, value) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/distlib/metadata.py"", line 478, in set if not scheme.is_valid_constraint_list(value): File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/distlib/version.py"", line 713, in is_valid_constraint_list return self.is_valid_matcher('dummy_name (%s)' % s) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/distlib/version.py"", line 703, in is_valid_matcher self.matcher(s) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/distlib/version.py"", line 104, in __init__ r = self.parse_requirement(s) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/distlib/version.py"", line 98, in parse_requirement return parse_requirement(s) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/distlib/util.py"", line 237, in parse_requirement versions, _ = get_versions(s) File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/distlib/util.py"", line 220, in get_versions raise SyntaxError('invalid constraint: %s' % ver_remaining) File """", line None SyntaxError: invalid constraint: File """", line None SyntaxError: invalid constraint: File ""/Applications/ChimeraX-1.0.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/distlib/util.py"", line 220, in get_versions raise SyntaxError('invalid constraint: %s' % ver_remaining) See log for complete Python traceback. OpenGL version: 4.1 INTEL-12.10.16 OpenGL renderer: Intel(R) Iris(TM) Pro Graphics 6200 OpenGL vendor: Intel Inc.Hardware: Hardware Overview: Model Name: iMac Model Identifier: iMac16,2 Processor Name: Intel Core i5 Processor Speed: 2.8 GHz Number of Processors: 1 Total Number of Cores: 4 L2 Cache (per Core): 256 KB L3 Cache: 4 MB Memory: 16 GB Boot ROM Version: 232.0.0.0.0 SMC Version (system): 2.32f20 Software: System Software Overview: System Version: macOS 10.14.6 (18G3020) Kernel Version: Darwin 18.7.0 Time since boot: 5:22 Graphics/Displays: Intel Iris Pro Graphics 6200: Chipset Model: Intel Iris Pro Graphics 6200 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x1622 Revision ID: 0x000a Metal: Supported, feature set macOS GPUFamily1 v4 Displays: iMac: Display Type: LCD Resolution: 1920 x 1080 (1080p FHD - Full High Definition) UI Looks like: 1920 x 1080 Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Automatically Adjust Brightness: No Connection Type: DisplayPort PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.8 }}} " defect closed normal 1.1 Tool Shed fixed Conrad Huang all ChimeraX