id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 3318 Shape command allows creating submodel without a parent model goddard@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Darwin-19.4.0-x86_64-i386-64bit ChimeraX Version: 1.0rc202005242323 (2020-05-24 23:23:37 UTC) Description shape icos clip -> error Log: Startup Messages --- warnings | QWebEngineUrlScheme::registerScheme: Scheme ""cxcmd"" already registered QWebEngineUrlScheme::registerScheme: Scheme ""help"" already registered QWebEngineUrlScheme::registerScheme: Scheme ""cxcmd"" already registered QWebEngineUrlScheme::registerScheme: Scheme ""help"" already registered QWebEngineUrlScheme::registerScheme: Scheme ""cxcmd"" already registered 8 messages similar to the above omitted Replacing file-saver for 'DCD coordinates' from MD-crds bundle with that from MDcrds bundle Replacing opener for 'Gromacs full-precision coordinates' from MD-crds bundle with that from MDcrds bundle Replacing opener for 'Gromacs compressed coordinates' from MD-crds bundle with that from MDcrds bundle Replacing opener for 'DCD coordinates' from MD-crds bundle with that from MDcrds bundle notes | Replacing data format 'Gromacs full-precision coordinates' as defined by ChimeraX-MD-crds bundle with definition from ChimeraX-MDcrds bundle Replacing data format 'Gromacs compressed coordinates' as defined by ChimeraX- MD-crds bundle with definition from ChimeraX-MDcrds bundle Replacing data format 'DCD coordinates' as defined by ChimeraX-MD-crds bundle with definition from ChimeraX-MDcrds bundle UCSF ChimeraX version: 1.0rc202005220158 (2020-05-24) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > shape icosahedron modelId #1.1 > clip Traceback (most recent call last): File ""/Users/goddard/ucsf/cx-1.0/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""/Users/goddard/ucsf/cx-1.0/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/model_panel/tool.py"", line 165, in lambda *args, ft=self._fill_tree, ar=always_rebuild: ft(always_rebuild=ar)) File ""/Users/goddard/ucsf/cx-1.0/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/model_panel/tool.py"", line 214, in _fill_tree parent = item_stack[0] if len(item_stack) == 1 else item_stack[len_id-1] IndexError: list index out of range Error processing trigger ""new frame"": IndexError: list index out of range File ""/Users/goddard/ucsf/cx-1.0/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/model_panel/tool.py"", line 214, in _fill_tree parent = item_stack[0] if len(item_stack) == 1 else item_stack[len_id-1] See log for complete Python traceback. OpenGL version: 4.1 ATI-3.8.24 OpenGL renderer: AMD Radeon Pro Vega 20 OpenGL Engine OpenGL vendor: ATI Technologies Inc.Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro15,3 Processor Name: 8-Core Intel Core i9 Processor Speed: 2.4 GHz Number of Processors: 1 Total Number of Cores: 8 L2 Cache (per Core): 256 KB L3 Cache: 16 MB Hyper-Threading Technology: Enabled Memory: 32 GB Boot ROM Version: 1037.100.362.0.0 (iBridge: 17.16.14281.0.0,0) Software: System Software Overview: System Version: macOS 10.15.4 (19E287) Kernel Version: Darwin 19.4.0 Time since boot: 17 days 14:50 Graphics/Displays: Intel UHD Graphics 630: Chipset Model: Intel UHD Graphics 630 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x3e9b Revision ID: 0x0002 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal: Supported, feature set macOS GPUFamily2 v1 Radeon Pro Vega 20: Chipset Model: Radeon Pro Vega 20 Type: GPU Bus: PCIe PCIe Lane Width: x8 VRAM (Total): 4 GB Vendor: AMD (0x1002) Device ID: 0x69af Revision ID: 0x00c0 ROM Revision: 113-D2060I-087 VBIOS Version: 113-D20601MA0T-016 Option ROM Version: 113-D20601MA0T-016 EFI Driver Version: 01.01.087 Automatic Graphics Switching: Supported gMux Version: 5.0.0 Metal: Supported, feature set macOS GPUFamily2 v1 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2880 x 1800 Retina Framebuffer Depth: 24-Bit Color (ARGB8888) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.8 }}} " defect closed normal Core fixed Eric Pettersen all ChimeraX