id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
3314	Non-functional selectors	phil.cruz@…	Eric Pettersen	"{{{
The following bug report has been submitted:
Platform:        Darwin-18.7.0-x86_64-i386-64bit
ChimeraX Version: 1.0 (2020-05-08)
Description
When I open the attached file, and then define a series of user-defined selectors,  choosing these named selections gives the message ""Nothing Selected"". Somehow the definitions are lost, and indeed nothing is selected.

Here are the commands:
select  :1-49,135-196,282-295
name domain1 sel
color sel red
sel :50-99, 109-134,193-281
name domain2 sel
color sel yellow
sel :297-395
name domain3 sel
color sel blue
sel :100-109
name fusion sel
color sel green
sel :396-453
name stem sel
color sel hot pink
sel :454-495
name membrane sel
color sel pink 

Log:
UCSF ChimeraX version: 1.0rc202005080235 (2020-05-08)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open ""/Users/cruzp2/OneDrive - National Institutes of
> Health/Schrodinger/fluoroquinolones/model1/InducedFit_model1/InducedFit_model1_rec.mae""
> format ""schrodinger maestro"" maestro

Expected a keyword  

> open ""/Users/cruzp2/OneDrive - National Institutes of
> Health/Schrodinger/fluoroquinolones/model1/InducedFit_model1/InducedFit_model1_rec.mae""

Chain information for InducedFit_model1_rec.mae #1  
---  
Chain | Description  
| No description available  
  
Opened InducedFit_model1_rec.mae containing 1 structures (7563 atoms, 7644
bonds)  

> select :1-49,135-196,282-295

1904 atoms, 1919 bonds, 1 model selected  

> name domain1 sel

> color sel red

> select :50-99, 109-134,193-281

2567 atoms, 2592 bonds, 1 model selected  

> name domain2 sel

> color sel yellow

> select :297-395

1522 atoms, 1538 bonds, 1 model selected  

> name domain3 sel

> color sel blue

> select :100-109

123 atoms, 125 bonds, 1 model selected  

> name fusion sel

> color sel green

> select :396-453

862 atoms, 872 bonds, 1 model selected  

> name stem sel

> color sel hot pink

> select :454-495

651 atoms, 656 bonds, 1 model selected  

> name membrane sel

> color sel pink

> select clear

> select domain1

Nothing selected  




OpenGL version: 4.1 ATI-2.11.21
OpenGL renderer: AMD Radeon Pro 560 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro14,3
      Processor Name: Intel Core i7
      Processor Speed: 3.1 GHz
      Number of Processors: 1
      Total Number of Cores: 4
      L2 Cache (per Core): 256 KB
      L3 Cache: 8 MB
      Hyper-Threading Technology: Enabled
      Memory: 16 GB
      Boot ROM Version: 204.0.0.0.0
      SMC Version (system): 2.45f0

Software:

    System Software Overview:

      System Version: macOS 10.14.6 (18G3020)
      Kernel Version: Darwin 18.7.0
      Time since boot: 12 days 16:16

Graphics/Displays:

    Intel HD Graphics 630:

      Chipset Model: Intel HD Graphics 630
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x591b
      Revision ID: 0x0004
      Automatic Graphics Switching: Supported
      gMux Version: 4.0.29 [3.2.8]
      Metal: Supported, feature set macOS GPUFamily2 v1

    Radeon Pro 560:

      Chipset Model: Radeon Pro 560
      Type: GPU
      Bus: PCIe
      PCIe Lane Width: x8
      VRAM (Total): 4 GB
      Vendor: AMD (0x1002)
      Device ID: 0x67ef
      Revision ID: 0x00c0
      ROM Revision: 113-C980AJ-927
      VBIOS Version: 113-C9801AU-A02
      EFI Driver Version: 01.A0.927
      Automatic Graphics Switching: Supported
      gMux Version: 4.0.29 [3.2.8]
      Metal: Supported, feature set macOS GPUFamily2 v1
      Displays:
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 2880 x 1800 Retina
          Framebuffer Depth: 24-Bit Color (ARGB8888)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Rotation: Supported
          Automatically Adjust Brightness: No
        BenQ GW2750H:
          Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
          UI Looks like: 1920 x 1080 @ 60 Hz
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Display Serial Number: 6CD03450SL0 
          Mirror: Off
          Online: Yes
          Rotation: Supported
          Adapter Type: Apple USB-C Digital AV Adapter
          Automatically Adjust Brightness: No
          Adapter Firmware Version: 2.35
File attachment: InducedFit_model1_rec.mae

}}}

[attachment:""InducedFit_model1_rec.mae""]
"	defect	closed	normal		Command Line		not a bug		Conrad Huang Elaine Meng				all	ChimeraX