id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 3174 Save options widgets deleted eva.bertosin@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Darwin-18.7.0-x86_64-i386-64bit ChimeraX Version: 1.0 (2020-05-07) Description (Describe the actions that caused this problem to occur here) Every 2nd save, it does not work (independently of the format I want to use for saving) Log: UCSF ChimeraX version: 1.0rc202005070439 (2020-05-07) © 2016-2020 Regents of the University of California. All rights reserved. > open /Users/evabertosin/Desktop/figure/APEGpKPBS.cxs format session Log from Sat May 9 14:20:55 2020UCSF ChimeraX version: 1.0rc202005070439 (2020-05-07) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/evabertosin/Desktop/figure/APEGpKPBS-asym.mrc Opened APEGpKPBS-asym.mrc, grid size 200,200,200, pixel 4.64, shown at level 5.98e-05, step 1, values float32 > open /Users/evabertosin/Desktop/figure/APEGpKPBS-bottom.mrc Opened APEGpKPBS-bottom.mrc, grid size 200,200,200, pixel 4.64, shown at level 0.0511, step 1, values float32 > open /Users/evabertosin/Desktop/figure/APEGpKPBS-top.mrc Opened APEGpKPBS-top.mrc, grid size 200,200,200, pixel 4.64, shown at level 0.0449, step 1, values float32 > set bgColor white > lighting soft > volume #1 level 0.03176 > volume #2 level 0.04295 > volume #3 level 0.05296 > volume #1 color #66ff33 > volume #1 color #15724a > volume #1 color #99ffcc > volume #1 color #66cc99 > volume #1 color #33cc66 > volume #1 color #339966 > volume #1 color #006633 > volume #1 color #33ff99 > volume #1 color #336633 > volume #1 color #003300 > volume #1 color #99ff99 > volume #1 color #66cc66 > volume #1 color #33cc33 > volume #1 color #669966 > volume #2 color #669966 > volume #3 color #669966 > volume #3 color #336633 > volume #3 color #003300 > volume #3 color #99ff99 > volume #3 color #66cc66 > volume #3 color #33cc33 > volume #3 color #339933 > volume #3 color #006600 > volume #3 color #66ff66 > volume #3 color #33ff33 > volume #3 color lime > volume #3 color #00cc00 > volume #3 color #009900 > volume #3 color #66ff99 > volume #3 color #33ff66 > volume #3 color #00ff33 > volume #3 color #00cc33 > volume #3 color #009933 > volume #3 color #99ffcc > volume #3 color #66cc99 > volume #3 color #33cc66 > volume #3 color #339966 > volume #3 color #006633 > volume #3 color #33ff99 > volume #3 color #00ff66 > volume #3 color #00ff99 > volume #3 color #00cc66 > volume #3 color #33cc99 > volume #3 color #66ffcc > volume #3 color #33ffcc > volume #3 color #669966 > save /Users/evabertosin/Desktop/figure/APEGpKPBS.cxs opened ChimeraX session > save /Users/evabertosin/Desktop/figure/APEGpKPBS_5.tif width 704 height 578 > supersample 3 > save /Users/evabertosin/Desktop/figure/APEGpKPBS_6.tif width 704 height 578 > supersample 3 Traceback (most recent call last): File ""/Applications/ChimeraX-1.0-rc-2020.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/tool.py"", line 162, in callback bundle_info.run_provider(session, name, session.toolbar, display_name=display_name) File ""/Applications/ChimeraX-1.0-rc-2020.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 453, in run_provider return api._api_caller.run_provider(api, session, name, mgr, **kw) File ""/Applications/ChimeraX-1.0-rc-2020.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/toolshed/__init__.py"", line 1660, in run_provider return cls._get_func(api, ""run_provider"")(session, name, mgr, **kw) File ""/Applications/ChimeraX-1.0-rc-2020.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/__init__.py"", line 38, in run_provider providers.run_provider(session, name) File ""/Applications/ChimeraX-1.0-rc-2020.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/providers.py"", line 45, in run_provider what(session) File ""/Applications/ChimeraX-1.0-rc-2020.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/providers.py"", line 27, in _file_save show_save_file_dialog(session) File ""/Applications/ChimeraX-1.0-rc-2020.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/dialog.py"", line 122, in show_save_file_dialog _dlg.display(session, **kw) File ""/Applications/ChimeraX-1.0-rc-2020.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/dialog.py"", line 24, in display self._customize_dialog(session, dialog) File ""/Applications/ChimeraX-1.0-rc-2020.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/dialog.py"", line 86, in _customize_dialog self._format_selected(session, dialog) File ""/Applications/ChimeraX-1.0-rc-2020.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/dialog.py"", line 98, in _format_selected self._options_layout.addWidget(self._current_option) RuntimeError: wrapped C/C++ object of type SaveOptionsWidget has been deleted RuntimeError: wrapped C/C++ object of type SaveOptionsWidget has been deleted File ""/Applications/ChimeraX-1.0-rc-2020.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/save_command/dialog.py"", line 98, in _format_selected self._options_layout.addWidget(self._current_option) See log for complete Python traceback. OpenGL version: 4.1 INTEL-12.10.12 OpenGL renderer: Intel(R) Iris(TM) Graphics 6100 OpenGL vendor: Intel Inc.Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro12,1 Processor Name: Intel Core i5 Processor Speed: 2.9 GHz Number of Processors: 1 Total Number of Cores: 2 L2 Cache (per Core): 256 KB L3 Cache: 3 MB Hyper-Threading Technology: Enabled Memory: 16 GB Boot ROM Version: 186.0.0.0.0 SMC Version (system): 2.28f7 Software: System Software Overview: System Version: macOS 10.14.6 (18G95) Kernel Version: Darwin 18.7.0 Time since boot: 27 minutes Graphics/Displays: Intel Iris Graphics 6100: Chipset Model: Intel Iris Graphics 6100 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x162b Revision ID: 0x0009 Metal: Supported, feature set macOS GPUFamily1 v4 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Framebuffer Depth: 24-Bit Color (ARGB8888) Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Automatically Adjust Brightness: No }}} " defect closed normal Input/Output duplicate all ChimeraX