id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 3109 Error drawing selection outline m_mlk@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Linux-5.3.0-28-generic-x86_64-with-debian-buster-sid ChimeraX Version: 0.93 (2020-04-03) Description Opened a PDB file. Selected a chain. Chimera X crashed. Log: UCSF ChimeraX version: 0.93 (2020-04-03) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /home/martin/Downloads/ACE2_receptor.pdb format PDB Summary of feedback from opening /home/martin/Downloads/ACE2_receptor.pdb --- warnings | Ignored bad PDB record found on line 2 REMARK File generated by Swiss-PdbViewer 3.70b15 Ignored bad PDB record found on line 3 REMARK http://www.expasy.org/spdbv/ Ignored bad PDB record found on line 22203 SPDBVT 1.0000000000 0.0000000000 0.0000000000 Ignored bad PDB record found on line 22204 SPDBVT 0.0000000000 1.0000000000 0.0000000000 Ignored bad PDB record found on line 22205 SPDBVT 0.0000000000 0.0000000000 1.0000000000 830 messages similar to the above omitted Chain information for ACE2_receptor.pdb #1 --- Chain | Description A C | No description available B D | No description available > select /D 6089 atoms, 6252 bonds, 1 model selected An error occurred in drawing the scene. Redrawing graphics is now stopped to avoid a continuous stream of error messages. To restart graphics use the command ""graphics restart"" after changing the settings that caused the error. Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 73, in draw_new_frame view.draw(check_for_changes = False) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 166, in draw self._draw_scene(camera, drawings) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 235, in _draw_scene r.outline.set_outline_mask() # copy depth to outline framebuffer File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/graphics/opengl.py"", line 1734, in set_outline_mask cfb.copy_to_framebuffer(mfb, color=False) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/chimerax/graphics/opengl.py"", line 2167, in copy_to_framebuffer GL.glBlitFramebuffer(0, 0, w, h, 0, 0, w, h, what, GL.GL_NEAREST) File ""/usr/lib/ucsf-chimerax/lib/python3.7/site- packages/PyOpenGL-3.1.5-py3.7.egg/OpenGL/platform/baseplatform.py"", line 415, in __call__ return self( *args, **named ) File ""src/errorchecker.pyx"", line 58, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1282, description = b'invalid operation', baseOperation = glBlitFramebuffer, cArguments = ( 0, 0, 1272, 692, 0, 0, 1272, 692, 256, GL_NEAREST, ) ) OpenGL version: 3.3 (Core Profile) Mesa 19.2.8 OpenGL renderer: llvmpipe (LLVM 9.0, 256 bits) OpenGL vendor: VMware, Inc. Manufacturer: innotek GmbH Model: VirtualBox OS: Ubuntu 18.04 bionic Architecture: 64bit ELF CPU: 1 Intel(R) Core(TM) i7-6700HQ CPU @ 2.60GHz Cache Size: 6144 KB Graphics: 00:02.0 VGA compatible controller [0300]: VMware SVGA II Adapter [15ad:0405] Subsystem: VMware SVGA II Adapter [15ad:0405] Kernel driver in use: vmwgfx }}} " defect closed normal Graphics fixed all ChimeraX