id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 3086 IndexError during ribbon pick chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Darwin-18.7.0-x86_64-i386-64bit ChimeraX Version: 0.94 (2020-04-20) Description (Describe the actions that caused this problem to occur here) Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 0.94.dev202004200102 (2020-04-20) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open2 /Users/xwu/Desktop/1cqt.pdb 1cqt.pdb title: Crystal structure of A ternary complex containing an oca-B peptide, the oct-1 pou domain, and an octamer element [more info...] Chain information for 1cqt.pdb #1 --- Chain | Description A B | pou domain, class 2, transcription factor 1 I J | pou domain, class 2, associating factor 1 M O | DNA (5'- D(*TP*GP*TP*ap*TP*GP*CP*ap*ap*ap*TP*ap*ap*GP*G)-3') N P | DNA (5'- D(*ap*CP*CP*TP*TP*ap*TP*TP*TP*GP*CP*ap*TP*ap*C)-3') > style sphere Changed 3649 atom styles > style stick Changed 3649 atom styles > style sphere Changed 3649 atom styles > style ball Changed 3649 atom styles > nucleotides atoms > style nucleic stick Changed 1183 atom styles > nucleotides atoms > style nucleic stick Changed 1183 atom styles > nucleotides fill > style nucleic stick Changed 1183 atom styles > show cartoons > hide atoms > interfaces ~solvent 8 buried areas: A N 973, B O 865, A M 847, B P 750, O P 677, M N 649, A I 546, B J 520 > interfaces ~solvent 8 buried areas: A N 973, B O 865, A M 847, B P 750, O P 677, M N 649, A I 546, B J 520 > interfaces ~solvent 8 buried areas: A N 973, B O 865, A M 847, B P 750, O P 677, M N 649, A I 546, B J 520 > interfaces ~solvent 8 buried areas: A N 973, B O 865, A M 847, B P 750, O P 677, M N 649, A I 546, B J 520 > preset cartoons/nucleotides ribbons/slabs Changed 0 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect nucleotides tube/slab shape box > lighting simple > lighting simple > lighting simple > lighting simple > lighting flat > lighting flat > view > view > view > view > view orient > view orient > ui mousemode rightMode minimize > ui mousemode rightMode minimize > ui mousemode rightMode windowing > ui mousemode rightMode windowing > ui mousemode rightMode clip > show target m > show target m > select #1.1 8 pseudobonds, 1 model selected > ~select #1.1 Nothing selected > select #1 3649 atoms, 3819 bonds, 8 pseudobonds, 2 models selected > ~select #1 Nothing selected > ui mousemode rightMode ""crop volume"" > ui mousemode rightMode select > volume step 2 No volumes specified > volume step 1 No volumes specified > view orient > volume projectionMode 2d-xyz No volumes specified > volume projectionMode 2d-xyz No volumes specified > volume projectionMode 3d No volumes specified > volume projectionMode 3d No volumes specified > volume region all imageMode ""full region"" No volumes specified > volume region all imageMode ""full region"" No volumes specified > volume region all imageMode ""full region"" No volumes specified > graphics silhouettes false > graphics silhouettes true > lighting shadows true intensity 0.5 > lighting flat > lighting full > lighting soft > lighting full > nucleotides atoms > style nucleic stick Changed 1183 atom styles > nucleotides atoms > style nucleic stick Changed 1183 atom styles > nucleotides fill > style nucleic stick Changed 1183 atom styles > nucleotides slab > style nucleic stick Changed 1183 atom styles > nucleotides tube/slab shape box > nucleotides tube/slab shape box > color bynucleotide > color bynucleotide > color bynucleotide > nucleotides stubs > nucleotides ladder > hide surfaces > show surfaces > hide surfaces > hide cartoons > show cartoons > hide atoms > show atoms > show atoms > hide atoms > style ball Changed 3649 atom styles > style ball Changed 3649 atom styles > style ball Changed 3649 atom styles > style sphere Changed 3649 atom styles > style sphere Changed 3649 atom styles > style stick Changed 3649 atom styles > style stick Changed 3649 atom styles > hide cartoons > show cartoons > hide atoms > show atoms > show atoms > show atoms > hide atoms > volume step 2 No volumes specified > select clear > select clear > volume appearance airways No volumes specified > preset cartoons/nucleotides cylinders/stubs Changed 0 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect cartoon style protein modeh tube rad 2 sides 24 thick 0.6 cartoon style nucleic x round width 1.6 thick 1.6 nucleotides stubs > preset cartoons/nucleotides ribbons/slabs Changed 0 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect nucleotides tube/slab shape box > preset ""molecular surfaces"" ""ghostly white"" Changed 0 atom styles Preset expands to these ChimeraX commands: style (protein|nucleic|solvent) & @@draw_mode=0 stick surface color white targ s trans 80 > preset cartoons/nucleotides ribbons/slabs Changed 0 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect nucleotides tube/slab shape box > toolshed show ""Cage Builder"" > toolshed show Toolbar > select #1.2 310 atoms, 1 model selected > ~select #1.2 1 model selected > select #1 3649 atoms, 3819 bonds, 8 pseudobonds, 2 models selected > ~select #1 8 models selected > select #1.5 281 atoms, 1 model selected > ~select #1.5 1 model selected > select #1.4 293 atoms, 1 model selected > ~select #1.4 1 model selected > select #1.3 299 atoms, 1 model selected > ~select #1.3 1 model selected > select #1.9 184 atoms, 1 model selected > ~select #1.9 1 model selected > select #1.9 184 atoms, 1 model selected > ~select #1.9 1 model selected > select #1.8 179 atoms, 1 model selected > ~select #1.8 1 model selected > select #1.8 179 atoms, 1 model selected > select #1.9 184 atoms, 1 model selected > ~select #1.9 1 model selected > select #1.8 179 atoms, 1 model selected > ~select #1.8 1 model selected > hide #1.8 models > hide #1.6 models > hide #1.2 models > hide #1.4 models > hide #1.8 target m > hide #1.8 target m > hide #1.1 models > hide #!1 models > show #!1 models > hide #1.3 models > hide #1.5 models > hide #1.7 models > hide #1.9 models > hide #!1 models > show #1.1 models > hide #1.1 models > show #1.2 models > hide #1.2 models > hide #!1 models > show #1.2 models > show #1.3 models > hide #1.3 models > hide #1.2 models > select #1 3649 atoms, 3819 bonds, 8 pseudobonds, 2 models selected > ~select #1 8 models selected > select #1.2 310 atoms, 1 model selected > ~select #1.2 1 model selected > select #1.3 299 atoms, 1 model selected > ~select #1.3 1 model selected > select #1.3 299 atoms, 1 model selected > select #1.4 293 atoms, 1 model selected > select #1.5 281 atoms, 1 model selected > select #1.6 1061 atoms, 1 model selected > select #1.7 1042 atoms, 1 model selected > hide #1.7 target m > show #1.7 models > hide #1.7 models > hide #!1 models > show #!1 models > show #1.1 models > show #1.2 models > show #1.3 models > show #1.4 models > show #1.5 models > show #1.6 models > show #1.7 models > show #1.8 models > show #1.9 models > ~select #1.7 1 model selected > view ligand No objects specified. > one molecucle Unknown command: one molecucle > toolshed show ""Basic Actions"" > select /A 1061 atoms, 1076 bonds, 2 pseudobonds, 2 models selected > select /A 1061 atoms, 1076 bonds, 2 pseudobonds, 2 models selected > select /A 1061 atoms, 1076 bonds, 2 pseudobonds, 2 models selected > select /A 1061 atoms, 1076 bonds, 2 pseudobonds, 2 models selected > toolshed show ""Command Line Interface"" > toolshed show ""Model Panel"" > toolshed show ViewDockX No suitable models found for ViewDockX > select 3649 atoms, 3819 bonds, 8 pseudobonds, 2 models selected Drag select of 6 pseudobonds, 204 residues, 76 shapes Drag select of 4 pseudobonds, 154 residues, 73 shapes Drag select of 4 pseudobonds, 136 residues, 70 shapes > delete atoms (#!1 & sel) > delete bonds (#!1 & sel) Drag select of 1 pseudobonds, 11 residues > delete atoms (#!1 & sel) > delete bonds (#!1 & sel) Drag select of 16 atoms, 4 pseudobonds, 18 residues, 10 bonds, 11 shapes > select clear Drag select of 16 atoms, 6 pseudobonds, 30 residues, 10 bonds, 11 shapes > delete atoms (#!1 & sel) > delete bonds (#!1 & sel) Drag select of 5 atoms, 1 pseudobonds, 2 bonds > delete atoms (#!1 & sel) > delete bonds (#!1 & sel) No visible atoms or bonds selected Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 139, in _redraw_timer_callback self.session.ui.mouse_modes.mouse_pause_tracking() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 362, in mouse_pause_tracking self._mouse_pause() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 466, in _mouse_pause m.pause(self._mouse_pause_position) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 623, in pause p = picked_object(x, y, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 613, in picked_object exclude = exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 617, in picked_object_on_segment p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 788, in first_intercept_on_segment p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 986, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 1002, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 586, in first_intercept ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 619, in _position_intercepts p = d.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] IndexError: index 196 is out of bounds for axis 0 with size 186 IndexError: index 196 is out of bounds for axis 0 with size 186 File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 139, in _redraw_timer_callback self.session.ui.mouse_modes.mouse_pause_tracking() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 362, in mouse_pause_tracking self._mouse_pause() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 466, in _mouse_pause m.pause(self._mouse_pause_position) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 623, in pause p = picked_object(x, y, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 613, in picked_object exclude = exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 617, in picked_object_on_segment p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 788, in first_intercept_on_segment p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 986, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 1002, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 586, in first_intercept ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 619, in _position_intercepts p = d.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] IndexError: index 196 is out of bounds for axis 0 with size 186 IndexError: index 196 is out of bounds for axis 0 with size 186 File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 139, in _redraw_timer_callback self.session.ui.mouse_modes.mouse_pause_tracking() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 362, in mouse_pause_tracking self._mouse_pause() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 466, in _mouse_pause m.pause(self._mouse_pause_position) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 623, in pause p = picked_object(x, y, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 613, in picked_object exclude = exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 617, in picked_object_on_segment p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 788, in first_intercept_on_segment p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 986, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 1002, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 586, in first_intercept ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 619, in _position_intercepts p = d.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] IndexError: index 196 is out of bounds for axis 0 with size 186 IndexError: index 196 is out of bounds for axis 0 with size 186 File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 139, in _redraw_timer_callback self.session.ui.mouse_modes.mouse_pause_tracking() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 362, in mouse_pause_tracking self._mouse_pause() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 466, in _mouse_pause m.pause(self._mouse_pause_position) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 623, in pause p = picked_object(x, y, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 613, in picked_object exclude = exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 617, in picked_object_on_segment p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 788, in first_intercept_on_segment p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 986, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 1002, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 586, in first_intercept ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 619, in _position_intercepts p = d.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] IndexError: index 196 is out of bounds for axis 0 with size 186 IndexError: index 196 is out of bounds for axis 0 with size 186 File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 139, in _redraw_timer_callback self.session.ui.mouse_modes.mouse_pause_tracking() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 362, in mouse_pause_tracking self._mouse_pause() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 466, in _mouse_pause m.pause(self._mouse_pause_position) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 623, in pause p = picked_object(x, y, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 613, in picked_object exclude = exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 617, in picked_object_on_segment p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 788, in first_intercept_on_segment p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 986, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 1002, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 586, in first_intercept ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 619, in _position_intercepts p = d.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] IndexError: index 196 is out of bounds for axis 0 with size 186 IndexError: index 196 is out of bounds for axis 0 with size 186 File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 139, in _redraw_timer_callback self.session.ui.mouse_modes.mouse_pause_tracking() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 362, in mouse_pause_tracking self._mouse_pause() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 466, in _mouse_pause m.pause(self._mouse_pause_position) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 623, in pause p = picked_object(x, y, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 613, in picked_object exclude = exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 617, in picked_object_on_segment p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 788, in first_intercept_on_segment p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 986, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 1002, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 586, in first_intercept ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 619, in _position_intercepts p = d.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] IndexError: index 196 is out of bounds for axis 0 with size 186 IndexError: index 196 is out of bounds for axis 0 with size 186 File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 139, in _redraw_timer_callback self.session.ui.mouse_modes.mouse_pause_tracking() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 362, in mouse_pause_tracking self._mouse_pause() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 466, in _mouse_pause m.pause(self._mouse_pause_position) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 623, in pause p = picked_object(x, y, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 613, in picked_object exclude = exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 617, in picked_object_on_segment p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 788, in first_intercept_on_segment p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 986, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 1002, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 586, in first_intercept ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 619, in _position_intercepts p = d.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] IndexError: index 196 is out of bounds for axis 0 with size 186 IndexError: index 196 is out of bounds for axis 0 with size 186 File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 139, in _redraw_timer_callback self.session.ui.mouse_modes.mouse_pause_tracking() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 362, in mouse_pause_tracking self._mouse_pause() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 466, in _mouse_pause m.pause(self._mouse_pause_position) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 623, in pause p = picked_object(x, y, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 613, in picked_object exclude = exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 617, in picked_object_on_segment p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 788, in first_intercept_on_segment p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 986, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 1002, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 586, in first_intercept ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 619, in _position_intercepts p = d.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] IndexError: index 196 is out of bounds for axis 0 with size 186 IndexError: index 196 is out of bounds for axis 0 with size 186 File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 139, in _redraw_timer_callback self.session.ui.mouse_modes.mouse_pause_tracking() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 362, in mouse_pause_tracking self._mouse_pause() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 466, in _mouse_pause m.pause(self._mouse_pause_position) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 623, in pause p = picked_object(x, y, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 613, in picked_object exclude = exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 617, in picked_object_on_segment p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 788, in first_intercept_on_segment p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 986, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 1002, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 586, in first_intercept ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 619, in _position_intercepts p = d.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] IndexError: index 196 is out of bounds for axis 0 with size 186 IndexError: index 196 is out of bounds for axis 0 with size 186 File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 139, in _redraw_timer_callback self.session.ui.mouse_modes.mouse_pause_tracking() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 362, in mouse_pause_tracking self._mouse_pause() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 466, in _mouse_pause m.pause(self._mouse_pause_position) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 623, in pause p = picked_object(x, y, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 613, in picked_object exclude = exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 617, in picked_object_on_segment p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 788, in first_intercept_on_segment p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 986, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 1002, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 586, in first_intercept ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 619, in _position_intercepts p = d.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] IndexError: index 196 is out of bounds for axis 0 with size 186 IndexError: index 196 is out of bounds for axis 0 with size 186 File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 139, in _redraw_timer_callback self.session.ui.mouse_modes.mouse_pause_tracking() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 362, in mouse_pause_tracking self._mouse_pause() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 466, in _mouse_pause m.pause(self._mouse_pause_position) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 623, in pause p = picked_object(x, y, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 613, in picked_object exclude = exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 617, in picked_object_on_segment p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 788, in first_intercept_on_segment p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 986, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 1002, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 586, in first_intercept ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 619, in _position_intercepts p = d.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] IndexError: index 196 is out of bounds for axis 0 with size 186 IndexError: index 196 is out of bounds for axis 0 with size 186 File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 139, in _redraw_timer_callback self.session.ui.mouse_modes.mouse_pause_tracking() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 362, in mouse_pause_tracking self._mouse_pause() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 466, in _mouse_pause m.pause(self._mouse_pause_position) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 623, in pause p = picked_object(x, y, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 613, in picked_object exclude = exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 617, in picked_object_on_segment p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 788, in first_intercept_on_segment p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 986, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 1002, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 586, in first_intercept ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 619, in _position_intercepts p = d.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] IndexError: index 196 is out of bounds for axis 0 with size 186 IndexError: index 196 is out of bounds for axis 0 with size 186 File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 139, in _redraw_timer_callback self.session.ui.mouse_modes.mouse_pause_tracking() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 362, in mouse_pause_tracking self._mouse_pause() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 466, in _mouse_pause m.pause(self._mouse_pause_position) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 623, in pause p = picked_object(x, y, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 613, in picked_object exclude = exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 617, in picked_object_on_segment p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 788, in first_intercept_on_segment p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 986, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 1002, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 586, in first_intercept ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 619, in _position_intercepts p = d.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] IndexError: index 196 is out of bounds for axis 0 with size 186 IndexError: index 196 is out of bounds for axis 0 with size 186 File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 139, in _redraw_timer_callback self.session.ui.mouse_modes.mouse_pause_tracking() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 362, in mouse_pause_tracking self._mouse_pause() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 466, in _mouse_pause m.pause(self._mouse_pause_position) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 623, in pause p = picked_object(x, y, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 613, in picked_object exclude = exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 617, in picked_object_on_segment p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 788, in first_intercept_on_segment p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 986, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 1002, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 586, in first_intercept ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 619, in _position_intercepts p = d.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] IndexError: index 196 is out of bounds for axis 0 with size 186 IndexError: index 196 is out of bounds for axis 0 with size 186 File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 139, in _redraw_timer_callback self.session.ui.mouse_modes.mouse_pause_tracking() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 362, in mouse_pause_tracking self._mouse_pause() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 466, in _mouse_pause m.pause(self._mouse_pause_position) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 623, in pause p = picked_object(x, y, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 613, in picked_object exclude = exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 617, in picked_object_on_segment p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 788, in first_intercept_on_segment p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 986, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 1002, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 586, in first_intercept ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 619, in _position_intercepts p = d.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] IndexError: index 196 is out of bounds for axis 0 with size 186 IndexError: index 196 is out of bounds for axis 0 with size 186 File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 139, in _redraw_timer_callback self.session.ui.mouse_modes.mouse_pause_tracking() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 362, in mouse_pause_tracking self._mouse_pause() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 466, in _mouse_pause m.pause(self._mouse_pause_position) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 623, in pause p = picked_object(x, y, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 613, in picked_object exclude = exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 617, in picked_object_on_segment p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 788, in first_intercept_on_segment p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 986, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 1002, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 586, in first_intercept ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 619, in _position_intercepts p = d.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] IndexError: index 196 is out of bounds for axis 0 with size 186 IndexError: index 196 is out of bounds for axis 0 with size 186 File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 139, in _redraw_timer_callback self.session.ui.mouse_modes.mouse_pause_tracking() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 362, in mouse_pause_tracking self._mouse_pause() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 466, in _mouse_pause m.pause(self._mouse_pause_position) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 623, in pause p = picked_object(x, y, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 613, in picked_object exclude = exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 617, in picked_object_on_segment p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 788, in first_intercept_on_segment p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 986, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 1002, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 586, in first_intercept ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 619, in _position_intercepts p = d.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] IndexError: index 196 is out of bounds for axis 0 with size 186 IndexError: index 196 is out of bounds for axis 0 with size 186 File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 139, in _redraw_timer_callback self.session.ui.mouse_modes.mouse_pause_tracking() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 362, in mouse_pause_tracking self._mouse_pause() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 466, in _mouse_pause m.pause(self._mouse_pause_position) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 623, in pause p = picked_object(x, y, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 613, in picked_object exclude = exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 617, in picked_object_on_segment p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 788, in first_intercept_on_segment p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 986, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 1002, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 586, in first_intercept ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 619, in _position_intercepts p = d.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] IndexError: index 196 is out of bounds for axis 0 with size 186 IndexError: index 196 is out of bounds for axis 0 with size 186 File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 139, in _redraw_timer_callback self.session.ui.mouse_modes.mouse_pause_tracking() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 362, in mouse_pause_tracking self._mouse_pause() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 466, in _mouse_pause m.pause(self._mouse_pause_position) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 623, in pause p = picked_object(x, y, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 613, in picked_object exclude = exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 617, in picked_object_on_segment p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 788, in first_intercept_on_segment p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 986, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 1002, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 586, in first_intercept ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 619, in _position_intercepts p = d.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] IndexError: index 196 is out of bounds for axis 0 with size 186 IndexError: index 196 is out of bounds for axis 0 with size 186 File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 139, in _redraw_timer_callback self.session.ui.mouse_modes.mouse_pause_tracking() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 362, in mouse_pause_tracking self._mouse_pause() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 466, in _mouse_pause m.pause(self._mouse_pause_position) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 623, in pause p = picked_object(x, y, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 613, in picked_object exclude = exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 617, in picked_object_on_segment p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 788, in first_intercept_on_segment p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 986, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 1002, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 586, in first_intercept ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 619, in _position_intercepts p = d.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] IndexError: index 196 is out of bounds for axis 0 with size 186 IndexError: index 196 is out of bounds for axis 0 with size 186 File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 139, in _redraw_timer_callback self.session.ui.mouse_modes.mouse_pause_tracking() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 362, in mouse_pause_tracking self._mouse_pause() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 466, in _mouse_pause m.pause(self._mouse_pause_position) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 623, in pause p = picked_object(x, y, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 613, in picked_object exclude = exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 617, in picked_object_on_segment p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 788, in first_intercept_on_segment p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 986, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 1002, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 586, in first_intercept ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 619, in _position_intercepts p = d.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] IndexError: index 196 is out of bounds for axis 0 with size 186 IndexError: index 196 is out of bounds for axis 0 with size 186 File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 139, in _redraw_timer_callback self.session.ui.mouse_modes.mouse_pause_tracking() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 362, in mouse_pause_tracking self._mouse_pause() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 466, in _mouse_pause m.pause(self._mouse_pause_position) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 623, in pause p = picked_object(x, y, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 613, in picked_object exclude = exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 617, in picked_object_on_segment p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 788, in first_intercept_on_segment p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 986, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 1002, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 586, in first_intercept ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 619, in _position_intercepts p = d.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] IndexError: index 196 is out of bounds for axis 0 with size 186 IndexError: index 196 is out of bounds for axis 0 with size 186 File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 139, in _redraw_timer_callback self.session.ui.mouse_modes.mouse_pause_tracking() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 362, in mouse_pause_tracking self._mouse_pause() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 466, in _mouse_pause m.pause(self._mouse_pause_position) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 623, in pause p = picked_object(x, y, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 613, in picked_object exclude = exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 617, in picked_object_on_segment p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 788, in first_intercept_on_segment p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 986, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 1002, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 586, in first_intercept ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 619, in _position_intercepts p = d.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] IndexError: index 196 is out of bounds for axis 0 with size 186 IndexError: index 196 is out of bounds for axis 0 with size 186 File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 139, in _redraw_timer_callback self.session.ui.mouse_modes.mouse_pause_tracking() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 362, in mouse_pause_tracking self._mouse_pause() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 466, in _mouse_pause m.pause(self._mouse_pause_position) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 623, in pause p = picked_object(x, y, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 613, in picked_object exclude = exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 617, in picked_object_on_segment p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 788, in first_intercept_on_segment p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 986, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 1002, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 586, in first_intercept ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 619, in _position_intercepts p = d.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] IndexError: index 196 is out of bounds for axis 0 with size 186 IndexError: index 196 is out of bounds for axis 0 with size 186 File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 139, in _redraw_timer_callback self.session.ui.mouse_modes.mouse_pause_tracking() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 362, in mouse_pause_tracking self._mouse_pause() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 466, in _mouse_pause m.pause(self._mouse_pause_position) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 623, in pause p = picked_object(x, y, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 613, in picked_object exclude = exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 617, in picked_object_on_segment p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 788, in first_intercept_on_segment p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 986, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 1002, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 586, in first_intercept ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 619, in _position_intercepts p = d.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] IndexError: index 196 is out of bounds for axis 0 with size 186 IndexError: index 196 is out of bounds for axis 0 with size 186 File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 139, in _redraw_timer_callback self.session.ui.mouse_modes.mouse_pause_tracking() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 362, in mouse_pause_tracking self._mouse_pause() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 466, in _mouse_pause m.pause(self._mouse_pause_position) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 623, in pause p = picked_object(x, y, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 613, in picked_object exclude = exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 617, in picked_object_on_segment p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 788, in first_intercept_on_segment p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 986, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 1002, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 586, in first_intercept ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 619, in _position_intercepts p = d.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] IndexError: index 196 is out of bounds for axis 0 with size 186 IndexError: index 196 is out of bounds for axis 0 with size 186 File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 139, in _redraw_timer_callback self.session.ui.mouse_modes.mouse_pause_tracking() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 362, in mouse_pause_tracking self._mouse_pause() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 466, in _mouse_pause m.pause(self._mouse_pause_position) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 623, in pause p = picked_object(x, y, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 613, in picked_object exclude = exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 617, in picked_object_on_segment p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/view.py"", line 788, in first_intercept_on_segment p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 986, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/graphics/drawing.py"", line 1002, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 586, in first_intercept ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/structure.py"", line 619, in _position_intercepts p = d.first_intercept(xyz1, xyz2, exclude=exclude) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] IndexError: index 196 is out of bounds for axis 0 with size 186 IndexError: index 196 is out of bounds for axis 0 with size 186 File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/ribbon.py"", line 684, in first_intercept r = self._residues[tranges[n-1][0]] See log for complete Python traceback. OpenGL version: 4.1 ATI-2.11.20 OpenGL renderer: AMD Radeon Pro 555X OpenGL Engine OpenGL vendor: ATI Technologies Inc. }}} " defect closed normal Graphics fixed all ChimeraX