id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 3046 bundles missing in the Linux build? s.dallangelo@… Greg Couch "{{{ The following bug report has been submitted: Platform: Linux-4.15.0-96-generic-x86_64-with-debian-buster-sid ChimeraX Version: 0.94 (2020-04-14) Description trying to build a peptide wit build sequence tool(Describe the actions that caused this problem to occur here) Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 0.94.dev202004140658 (2020-04-14) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > toolshed show ""Build Structure"" No rotamer libraries installed No rotamer libraries installed No rotamer libraries installed No rotamer libraries installed > help help:quickstart > toolshed show Rotamers Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 621, in start_tool ti = api._api_caller.start_tool(api, session, self, tool_info) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/core/toolshed/__init__.py"", line 1614, in start_tool return cls._get_func(api, ""start_tool"")(session, ti.name) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/atomic/swap_res/__init__.py"", line 37, in start_tool return prep_rotamers_dialog(session, tool_name) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/atomic/swap_res/tool.py"", line 22, in prep_rotamers_dialog _prd = PrepRotamersDialog(session, rotamers_tool_name) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/atomic/swap_res/tool.py"", line 44, in __init__ self._lib_change_cb) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/ui/options/options.py"", line 58, in __init__ self._make_widget(**kw) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/atomic/rotamers/manager.py"", line 82, in _make_widget callback=self.make_callback) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/atomic/rotamers/manager.py"", line 67, in library_name_menu lib_name = self.default_command_library_name File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/atomic/rotamers/manager.py"", line 108, in default_command_library_name raise LimitationError(""No rotamer libraries installed"") chimerax.core.errors.LimitationError: No rotamer libraries installed During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/ui/gui.py"", line 1375, in run(ses, ""toolshed show %s"" % StringArg.unparse(tool_name))) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/core/commands/run.py"", line 31, in run results = command.run(text, log=log) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2848, in run result = ci.function(session, **kw_args) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/core/commands/toolshed.py"", line 339, in toolshed_show bi.start_tool(session, name) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 627, in start_tool ""start_tool() failed for tool %s in bundle %s:\n%s"" % (tool_name, self.name, str(e))) chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Rotamers in bundle ChimeraX-SwapRes: No rotamer libraries installed chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Rotamers in bundle ChimeraX-SwapRes: No rotamer libraries installed File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 627, in start_tool ""start_tool() failed for tool %s in bundle %s:\n%s"" % (tool_name, self.name, str(e))) See log for complete Python traceback. OpenGL version: 3.3 (Core Profile) Mesa 19.2.8 OpenGL renderer: llvmpipe (LLVM 9.0, 256 bits) OpenGL vendor: VMware, Inc. Manufacturer: Hewlett-Packard Model: HP Z440 Workstation OS: Ubuntu 18.04 bionic Architecture: 64bit ELF CPU: 8 Intel(R) Xeon(R) CPU E5-1630 v4 @ 3.70GHz Cache Size: 10240 KB Graphics: 02:00.0 VGA compatible controller [0300]: NVIDIA Corporation GM107GL [Quadro K620] [10de:13bb] (rev a2) Subsystem: Hewlett-Packard Company GM107GL [Quadro K620] [103c:1098] Kernel driver in use: nvidia }}} " defect closed normal Platform fixed Eric Pettersen all ChimeraX