id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
293	Command line parsing error when Python shell open	Eric Pettersen	Greg Couch	"open 3fx2
-- start Python shell --
color blue

produces:

Traceback (most recent call last):
File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/cmd_line/gui.py"", line 120, in on_enter
cmd.run(cmd_text)
File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/core/commands/cli.py"", line 2086, in run
prev_annos = self._process_positional_arguments()
File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/core/commands/cli.py"", line 1948, in _process_positional_arguments
value, text = self._parse_arg(anno, text, session, False)
File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/core/commands/cli.py"", line 1795, in _parse_arg
value, replacement, rest = annotation.parse(text, session)
File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/core/commands/cli.py"", line 1040, in parse
return anno.parse(text, session)
File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/core/commands/cli.py"", line 901, in parse
aspec, text, rest = AtomSpecArg.parse(text, session)
File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/core/commands/atomspec.py"", line 84, in parse
return AtomSpecArg._parse_unquoted(text, session)
File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/core/commands/atomspec.py"", line 132, in _parse_unquoted
from ._atomspec import _atomspecParser
File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/core/commands/_atomspec.py"", line 16, in <module>
from grako.parsing import graken, Parser
File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/grako/__init__.py"", line 6, in <module>
from grako import tool
File ""grako/tool.py"", line 16, in init grako.tool (grako/tool.c:4415)
from grako.parser import GrakoGrammarGenerator
File ""grako/parser.py"", line 17, in init grako.parser (grako/parser.c:1456)
from grako.bootstrap import GrakoBootstrapParser
File ""grako/bootstrap.py"", line 15, in init grako.bootstrap (grako/bootstrap.c:36008)
from grako.parsing import graken, Parser
File ""grako/parsing.py"", line 20, in init grako.parsing (grako/parsing.c:1647)
from grako.contexts import ParseContext, graken
File ""grako/contexts.py"", line 13, in init grako.contexts (grako/contexts.c:22548)
from grako.color import Fore, Style
File ""grako/color.py"", line 8, in init grako.color (grako/color.c:924)
_colorama.init(autoreset=True)
File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/colorama/initialise.py"", line 37, in init
wrap_stream(orig_stdout, convert, strip, autoreset, wrap)
File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/colorama/initialise.py"", line 76, in wrap_stream
convert=convert, strip=strip, autoreset=autoreset)
File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/colorama/ansitowin32.py"", line 67, in __init__
strip = conversion_supported or (not wrapped.closed and not is_a_tty(wrapped))
AttributeError: 'PseudoFileOut' object has no attribute 'closed'"	defect	closed	blocker		Command Line		fixed						all	ChimeraX