id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
2914	"""color bynucleotide"" changes unrelated colors"	Elaine Meng	Greg Couch	"{{{
The following bug report has been submitted:
Platform:        Darwin-18.7.0-x86_64-i386-64bit
ChimeraX Version: 0.92 (2020-03-03)
Description
""color bynucleotide"" changes coloring of protein surface

This is a problem with both the command directly and the ""coloring"" icon in the Nucleotides tab of the Toolbar.  Example:

open 3q5s
surface protein
color bynucleotide


Log:
> version

UCSF ChimeraX version: 0.92 (2020-03-03)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open 3q5s format mmCIF fromDatabase pdb

3q5s title:  
Crystal structure of BmrR bound to Acetylcholine [more info...]  
  
Chain information for 3q5s #1  
---  
Chain | Description  
A | Multidrug-efflux transporter 1 regulator  
B | 23 bp promoter DNA  
  
Non-standard residues in 3q5s #1  
---  
ACH — acetylcholine  
GOL — glycerol (glycerin; propane-1,2,3-triol)  
  
3q5s mmCIF Assemblies  
---  
1| author_and_software_defined_assembly  
  
  

> surface protein

> color bynucleotide




OpenGL version: 4.1 INTEL-12.10.16
OpenGL renderer: Intel Iris Pro OpenGL Engine
OpenGL vendor: Intel Inc.

}}}
"	defect	closed	normal		Depiction		fixed						all	ChimeraX