id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 2779 Problem saving session after segmentation regions deleted christophe.leterrier@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Darwin-18.7.0-x86_64-i386-64bit ChimeraX Version: 0.92 (2020-01-24) Description When I try to save a session after deleting some of the segmentation clusters (using ""Close"" in the Models panel to close a bunch of them by multiple selection), I get the following error and I can't save the session: RuntimeError: Error while saving session data for 'tools' -> -> 'segment map' -> 'Roi001_C1b_N11_PFA_b4s-clath-b2s_3D_647_65K_63K_rot-90_TS3D gaussian.seg' -> : 'NoneType' object is not subscriptable File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/core/session.py"", line 279, in process raise RuntimeError(msg) See log for complete Python traceback. Log: UCSF ChimeraX version: 0.92 (2020-01-24) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/christo/Travail/Labo/Manuscrits/201610 Archan clathrin/Fig 5 > (PAINT#9)/Illu C1b_N11 #3/RoiXL.cxs"" Summary of feedback from opening /Users/christo/Travail/Labo/Manuscrits/201610 Archan clathrin/Fig 5 (PAINT#9)/Illu C1b_N11 #3/RoiXL.cxs --- note | Showing Roi001_C1b_N11_PFA_b4s-clath-b2s_3D_647_65K_63K_rot-90_TS3D gaussian.seg - 35 regions, 35 surfaces opened ChimeraX session > volume #3 region 653,0,0,769,290,299 > volume #4 region 570,0,0,844,290,299 > ui mousemode rightMode ""delete markers"" > marker delete #5:1 > marker delete #5:4 > marker delete #5:5 > marker delete #5:2 > save session ""/Users/christo/Travail/Labo/Manuscrits/201610 Archan > clathrin/Fig 5 (PAINT#9)/Illu C1b_N11 #3/Roi005.cxs"" > hide #!4 models > hide #!3 models > show #!3 models > hide #!2 models > show #!2 models Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 477, in gw.mouseReleaseEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_up"") File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 402, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 56, in mouse_up mouse_drag_select(self.mouse_down_position, event, mode, self.session, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 192, in mouse_drag_select select_pick(session, pick, mode) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 211, in select_pick session.logger.info('Drag select of %s' % _pick_description(pick)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) ValueError: not enough values to unpack (expected 2, got 1) ValueError: not enough values to unpack (expected 2, got 1) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) See log for complete Python traceback. > hide sel Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 475, in gw.mousePressEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_down"") File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 396, in _dispatch_mouse_event lm.mouse_up(MouseEvent(event, modifiers=modifiers)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 56, in mouse_up mouse_drag_select(self.mouse_down_position, event, mode, self.session, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 192, in mouse_drag_select select_pick(session, pick, mode) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 211, in select_pick session.logger.info('Drag select of %s' % _pick_description(pick)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) ValueError: not enough values to unpack (expected 2, got 1) ValueError: not enough values to unpack (expected 2, got 1) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 477, in gw.mouseReleaseEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_up"") File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 402, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 56, in mouse_up mouse_drag_select(self.mouse_down_position, event, mode, self.session, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 192, in mouse_drag_select select_pick(session, pick, mode) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 211, in select_pick session.logger.info('Drag select of %s' % _pick_description(pick)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) ValueError: not enough values to unpack (expected 2, got 1) ValueError: not enough values to unpack (expected 2, got 1) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) See log for complete Python traceback. > view orient > view initial Drag select of 332, 2406 of 10460 triangles > select #2 141 models selected > ~select #2 Nothing selected Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 477, in gw.mouseReleaseEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_up"") File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 402, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 56, in mouse_up mouse_drag_select(self.mouse_down_position, event, mode, self.session, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 192, in mouse_drag_select select_pick(session, pick, mode) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 211, in select_pick session.logger.info('Drag select of %s' % _pick_description(pick)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) ValueError: not enough values to unpack (expected 2, got 1) ValueError: not enough values to unpack (expected 2, got 1) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 475, in gw.mousePressEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_down"") File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 396, in _dispatch_mouse_event lm.mouse_up(MouseEvent(event, modifiers=modifiers)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 56, in mouse_up mouse_drag_select(self.mouse_down_position, event, mode, self.session, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 192, in mouse_drag_select select_pick(session, pick, mode) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 211, in select_pick session.logger.info('Drag select of %s' % _pick_description(pick)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) ValueError: not enough values to unpack (expected 2, got 1) ValueError: not enough values to unpack (expected 2, got 1) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 477, in gw.mouseReleaseEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_up"") File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 402, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 56, in mouse_up mouse_drag_select(self.mouse_down_position, event, mode, self.session, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 192, in mouse_drag_select select_pick(session, pick, mode) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 211, in select_pick session.logger.info('Drag select of %s' % _pick_description(pick)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) ValueError: not enough values to unpack (expected 2, got 1) ValueError: not enough values to unpack (expected 2, got 1) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) See log for complete Python traceback. > view orient > view initial Drag select of Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 477, in gw.mouseReleaseEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_up"") File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 402, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 56, in mouse_up mouse_drag_select(self.mouse_down_position, event, mode, self.session, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 192, in mouse_drag_select select_pick(session, pick, mode) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 211, in select_pick session.logger.info('Drag select of %s' % _pick_description(pick)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) ValueError: not enough values to unpack (expected 2, got 1) ValueError: not enough values to unpack (expected 2, got 1) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) See log for complete Python traceback. > hide sel Drag select of > hide sel > view orient > view initial > show #!4 models > select #4 3 models selected > volume sel showOutlineBox true > select #3 2 models selected > volume sel showOutlineBox false > select #3 2 models selected > ~select #3 Nothing selected > save session ""/Users/christo/Travail/Labo/Manuscrits/201610 Archan > clathrin/Fig 5 (PAINT#9)/Illu C1b_N11 #3/Roi005.cxs"" > marker #5 2.28,1.16,0 color yellow radius 0.01 > marker #5 3.376,1.16,0 color yellow radius 0.01 > marker #5 3.376,0.66,0 color yellow radius 0.01 > marker #5 2.28,0.66,0 color yellow radius 0.01 > view > view > save /Users/christo/Desktop/image1.png supersample 3 > hide #5 models > save /Users/christo/Desktop/image2.png supersample 3 > save session ""/Users/christo/Travail/Labo/Manuscrits/201610 Archan > clathrin/Fig 5 (PAINT#9)/Illu C1b_N11 #3/Roi005.cxs"" > show #5 models > view > save /Users/christo/Desktop/image1.png supersample 3 > hide #5 models > save /Users/christo/Desktop/image2.png supersample 3 > show #5 models > save session ""/Users/christo/Travail/Labo/Manuscrits/201610 Archan > clathrin/Fig 5 (PAINT#9)/Illu C1b_N11 #3/Roi005.cxs"" > open ""/Users/christo/Travail/Labo/Manuscrits/201610 Archan clathrin/Fig 5 > (PAINT#9)/Illu C1b_N11 #3/RoiXL.cxs"" Summary of feedback from opening /Users/christo/Travail/Labo/Manuscrits/201610 Archan clathrin/Fig 5 (PAINT#9)/Illu C1b_N11 #3/RoiXL.cxs --- note | Showing Roi001_C1b_N11_PFA_b4s-clath-b2s_3D_647_65K_63K_rot-90_TS3D gaussian.seg - 35 regions, 35 surfaces opened ChimeraX session > marker delete #5:1 > marker delete #5:3 > marker delete #5:4 > marker delete #5:5 > view orient > view initial > save session ""/Users/christo/Travail/Labo/Manuscrits/201610 Archan > clathrin/Fig 5 (PAINT#9)/Illu C1b_N11 #3/RoiXL_nomarkers.cxs"" > volume #3 region 435,0,0,551,290,299 > volume #4 region 360,0,0,626,290,299 > select #4 3 models selected > volume sel showOutlineBox true > hide #!4 models > show #!1 models > hide #!1 models Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 477, in gw.mouseReleaseEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_up"") File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 402, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 56, in mouse_up mouse_drag_select(self.mouse_down_position, event, mode, self.session, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 192, in mouse_drag_select select_pick(session, pick, mode) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 211, in select_pick session.logger.info('Drag select of %s' % _pick_description(pick)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) ValueError: not enough values to unpack (expected 2, got 1) ValueError: not enough values to unpack (expected 2, got 1) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) See log for complete Python traceback. > hide sel Drag select of Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 477, in gw.mouseReleaseEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_up"") File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 402, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 56, in mouse_up mouse_drag_select(self.mouse_down_position, event, mode, self.session, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 192, in mouse_drag_select select_pick(session, pick, mode) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 211, in select_pick session.logger.info('Drag select of %s' % _pick_description(pick)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) ValueError: not enough values to unpack (expected 2, got 1) ValueError: not enough values to unpack (expected 2, got 1) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) See log for complete Python traceback. > hide sel > show #!4 models > select #3 2 models selected > volume sel showOutlineBox false > select #3 2 models selected > ~select #3 Nothing selected > marker #5 1.44,1.16,0 color yellow radius 0.01 > marker #5 2.504,1.16,0 color yellow radius 0.01 > marker #5 2.504,0.66,0 color yellow radius 0.01 > marker #5 1.44,0.66,0 color yellow radius 0.01 Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 475, in gw.mousePressEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_down"") File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 396, in _dispatch_mouse_event lm.mouse_up(MouseEvent(event, modifiers=modifiers)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 56, in mouse_up mouse_drag_select(self.mouse_down_position, event, mode, self.session, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 192, in mouse_drag_select select_pick(session, pick, mode) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 211, in select_pick session.logger.info('Drag select of %s' % _pick_description(pick)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) ValueError: not enough values to unpack (expected 2, got 1) ValueError: not enough values to unpack (expected 2, got 1) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 477, in gw.mouseReleaseEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_up"") File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 402, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 56, in mouse_up mouse_drag_select(self.mouse_down_position, event, mode, self.session, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 192, in mouse_drag_select select_pick(session, pick, mode) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 211, in select_pick session.logger.info('Drag select of %s' % _pick_description(pick)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) ValueError: not enough values to unpack (expected 2, got 1) ValueError: not enough values to unpack (expected 2, got 1) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 475, in gw.mousePressEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_down"") File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 396, in _dispatch_mouse_event lm.mouse_up(MouseEvent(event, modifiers=modifiers)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 56, in mouse_up mouse_drag_select(self.mouse_down_position, event, mode, self.session, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 192, in mouse_drag_select select_pick(session, pick, mode) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 211, in select_pick session.logger.info('Drag select of %s' % _pick_description(pick)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) ValueError: not enough values to unpack (expected 2, got 1) ValueError: not enough values to unpack (expected 2, got 1) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 477, in gw.mouseReleaseEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_up"") File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 402, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 56, in mouse_up mouse_drag_select(self.mouse_down_position, event, mode, self.session, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 192, in mouse_drag_select select_pick(session, pick, mode) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 211, in select_pick session.logger.info('Drag select of %s' % _pick_description(pick)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) ValueError: not enough values to unpack (expected 2, got 1) ValueError: not enough values to unpack (expected 2, got 1) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) See log for complete Python traceback. > view orient > view initial > select #2 141 models selected > ~select #2 Nothing selected Drag select of > view > save session ""/Users/christo/Travail/Labo/Manuscrits/201610 Archan > clathrin/Fig 5 (PAINT#9)/Illu C1b_N11 #3/Roi004.cxs"" > save /Users/christo/Desktop/image3.png supersample 3 > hide #5 models > save /Users/christo/Desktop/image4.png supersample 3 > show #5 models > open ""/Users/christo/Travail/Labo/Manuscrits/201610 Archan clathrin/Fig 5 > (PAINT#9)/Illu C1b_N11 #3/RoiXL_nomarkers.cxs"" Summary of feedback from opening /Users/christo/Travail/Labo/Manuscrits/201610 Archan clathrin/Fig 5 (PAINT#9)/Illu C1b_N11 #3/RoiXL_nomarkers.cxs --- note | Showing Roi001_C1b_N11_PFA_b4s-clath-b2s_3D_647_65K_63K_rot-90_TS3D gaussian.seg - 35 regions, 35 surfaces opened ChimeraX session > volume #3 region 142,0,0,260,290,299 > volume #4 region 67,0,0,335,290,299 > hide #!4 models Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 477, in gw.mouseReleaseEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_up"") File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 402, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 56, in mouse_up mouse_drag_select(self.mouse_down_position, event, mode, self.session, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 192, in mouse_drag_select select_pick(session, pick, mode) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 211, in select_pick session.logger.info('Drag select of %s' % _pick_description(pick)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) ValueError: not enough values to unpack (expected 2, got 1) ValueError: not enough values to unpack (expected 2, got 1) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) See log for complete Python traceback. > hide sel Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 475, in gw.mousePressEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_down"") File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 396, in _dispatch_mouse_event lm.mouse_up(MouseEvent(event, modifiers=modifiers)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 56, in mouse_up mouse_drag_select(self.mouse_down_position, event, mode, self.session, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 192, in mouse_drag_select select_pick(session, pick, mode) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 211, in select_pick session.logger.info('Drag select of %s' % _pick_description(pick)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) ValueError: not enough values to unpack (expected 2, got 1) ValueError: not enough values to unpack (expected 2, got 1) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 477, in gw.mouseReleaseEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_up"") File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 402, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 56, in mouse_up mouse_drag_select(self.mouse_down_position, event, mode, self.session, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 192, in mouse_drag_select select_pick(session, pick, mode) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 211, in select_pick session.logger.info('Drag select of %s' % _pick_description(pick)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) ValueError: not enough values to unpack (expected 2, got 1) ValueError: not enough values to unpack (expected 2, got 1) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) See log for complete Python traceback. Drag select of > hide sel > view orient > view initial Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 477, in gw.mouseReleaseEvent = lambda e, s=self: s._dispatch_mouse_event(e, ""mouse_up"") File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 402, in _dispatch_mouse_event f(MouseEvent(event, modifiers=modifiers)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 56, in mouse_up mouse_drag_select(self.mouse_down_position, event, mode, self.session, self.view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 192, in mouse_drag_select select_pick(session, pick, mode) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 211, in select_pick session.logger.info('Drag select of %s' % _pick_description(pick)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) ValueError: not enough values to unpack (expected 2, got 1) ValueError: not enough values to unpack (expected 2, got 1) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 229, in _pick_description count, name = d.split(maxsplit = 1) See log for complete Python traceback. > hide sel Drag select of > show #!4 models > select #4 3 models selected > volume sel showOutlineBox true > select #3 2 models selected > volume sel showOutlineBox false > select #3 2 models selected > ~select #3 Nothing selected > view orient > view initial Unknown command: ` > close #2.1-141 > close #2.143-144 > close #2.146-149 > close #2.151-157 > close #2.159-168 > close #2.170 > close #2.172-175 > marker #5 0.268,1.16,0 color yellow radius 0.01 > marker #5 1.34,1.16,0 color yellow radius 0.01 > marker #5 1.34,0.66,0 color yellow radius 0.01 > marker #5 0.268,0.66,0 color yellow radius 0.01 > view > save session ""/Users/christo/Travail/Labo/Manuscrits/201610 Archan > clathrin/Fig 5 (PAINT#9)/Illu C1b_N11 #3/Roi002.cxs"" Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/session.py"", line 276, in process data = sm.take_snapshot(obj, session, self.state_flags) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/segger/regions.py"", line 1353, in take_snapshot data['_surface_color'] = sp.color File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/drawing.py"", line 530, in get_color return self._colors[0] TypeError: 'NoneType' object is not subscriptable During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/session.py"", line 796, in save session.save(output, version=version, include_maps=include_maps) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/session.py"", line 556, in save mgr.discovery(self._state_containers) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/session.py"", line 255, in discovery self.processed[key] = self.process(obj, parents) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/session.py"", line 279, in process raise RuntimeError(msg) RuntimeError: Error while saving session data for 'tools' -> -> 'segment map' -> 'Roi001_C1b_N11_PFA_b4s-clath-b2s_3D_647_65K_63K_rot-90_TS3D gaussian.seg' -> : 'NoneType' object is not subscriptable RuntimeError: Error while saving session data for 'tools' -> -> 'segment map' -> 'Roi001_C1b_N11_PFA_b4s-clath-b2s_3D_647_65K_63K_rot-90_TS3D gaussian.seg' -> : 'NoneType' object is not subscriptable File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/session.py"", line 279, in process raise RuntimeError(msg) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/session.py"", line 276, in process data = sm.take_snapshot(obj, session, self.state_flags) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/segger/regions.py"", line 1353, in take_snapshot data['_surface_color'] = sp.color File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/drawing.py"", line 530, in get_color return self._colors[0] TypeError: 'NoneType' object is not subscriptable During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 455, in run_provider return api._api_caller.run_provider(api, session, name, mgr, **kw) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/toolshed/__init__.py"", line 1632, in run_provider return cls._get_func(api, ""run_provider"")(session, name, mgr, **kw) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/__init__.py"", line 36, in run_provider tool.run_provider(session, name) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/tool.py"", line 223, in run_provider what(session) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/tool.py"", line 205, in _file_save session.ui.main_window.file_save_cb(session) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/ui/gui.py"", line 643, in file_save_cb self.save_dialog.display(self, session) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/ui/save_dialog.py"", line 139, in display fmt.save(session, filename) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/session.py"", line 1100, in save run(session, cmd) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/run.py"", line 31, in run results = command.run(text, log=log) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2837, in run result = ci.function(session, **kw_args) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/session.py"", line 992, in save_session save(session, filename, **kw) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/save.py"", line 61, in save fmt.export(session, filename, fmt.nicknames[0], **kw) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/io.py"", line 229, in export result = self.export_func(session, path, **kw) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/session.py"", line 796, in save session.save(output, version=version, include_maps=include_maps) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/session.py"", line 556, in save mgr.discovery(self._state_containers) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/session.py"", line 255, in discovery self.processed[key] = self.process(obj, parents) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/session.py"", line 279, in process raise RuntimeError(msg) RuntimeError: Error while saving session data for 'tools' -> -> 'segment map' -> 'Roi001_C1b_N11_PFA_b4s-clath-b2s_3D_647_65K_63K_rot-90_TS3D gaussian.seg' -> : 'NoneType' object is not subscriptable Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/session.py"", line 276, in process data = sm.take_snapshot(obj, session, self.state_flags) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/segger/regions.py"", line 1353, in take_snapshot data['_surface_color'] = sp.color File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/graphics/drawing.py"", line 530, in get_color return self._colors[0] TypeError: 'NoneType' object is not subscriptable During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 455, in run_provider return api._api_caller.run_provider(api, session, name, mgr, **kw) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/toolshed/__init__.py"", line 1632, in run_provider return cls._get_func(api, ""run_provider"")(session, name, mgr, **kw) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/__init__.py"", line 36, in run_provider tool.run_provider(session, name) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/tool.py"", line 223, in run_provider what(session) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/tool.py"", line 205, in _file_save session.ui.main_window.file_save_cb(session) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/ui/gui.py"", line 643, in file_save_cb self.save_dialog.display(self, session) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/ui/save_dialog.py"", line 139, in display fmt.save(session, filename) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/session.py"", line 1100, in save run(session, cmd) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/run.py"", line 31, in run results = command.run(text, log=log) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2837, in run result = ci.function(session, **kw_args) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/session.py"", line 992, in save_session save(session, filename, **kw) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/save.py"", line 61, in save fmt.export(session, filename, fmt.nicknames[0], **kw) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/io.py"", line 229, in export result = self.export_func(session, path, **kw) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/session.py"", line 796, in save session.save(output, version=version, include_maps=include_maps) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/session.py"", line 556, in save mgr.discovery(self._state_containers) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/session.py"", line 255, in discovery self.processed[key] = self.process(obj, parents) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/session.py"", line 279, in process raise RuntimeError(msg) RuntimeError: Error while saving session data for 'tools' -> -> 'segment map' -> 'Roi001_C1b_N11_PFA_b4s-clath-b2s_3D_647_65K_63K_rot-90_TS3D gaussian.seg' -> : 'NoneType' object is not subscriptable During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/toolbar/tool.py"", line 122, in callback bundle_info.run_provider(session, name, session.toolbar, display_name=display_name) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 462, in run_provider ""run_provider() failed in bundle %s:\n%s"" % (self.name, str(e))) chimerax.core.toolshed.ToolshedError: run_provider() failed in bundle ChimeraX-Toolbar: Error while saving session data for 'tools' -> -> 'segment map' -> 'Roi001_C1b_N11_PFA_b4s-clath-b2s_3D_647_65K_63K_rot-90_TS3D gaussian.seg' -> : 'NoneType' object is not subscriptable chimerax.core.toolshed.ToolshedError: run_provider() failed in bundle ChimeraX-Toolbar: Error while saving session data for 'tools' -> -> 'segment map' -> 'Roi001_C1b_N11_PFA_b4s-clath-b2s_3D_647_65K_63K_rot-90_TS3D gaussian.seg' -> : 'NoneType' object is not subscriptable File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/toolshed/info.py"", line 462, in run_provider ""run_provider() failed in bundle %s:\n%s"" % (self.name, str(e))) See log for complete Python traceback. OpenGL version: 4.1 INTEL-12.10.14 OpenGL renderer: Intel(R) Iris(TM) Graphics 550 OpenGL vendor: Intel Inc. }}} " defect closed normal Sessions fixed all ChimeraX