id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 2771 _openmm fails to load Tristan Croll Conrad Huang "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.18362 ChimeraX Version: 0.92 (2020-01-22) Description OpenMM is failing to import its compiled _openmm library in the latest daily builds. Log: Startup Messages --- warning | 'clip' is a prefix of an existing command 'clipper' UCSF ChimeraX version: 0.92 (2020-01-22) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open 3io0 format mmCIF fromDatabase pdb structureFactors true Summary of feedback from opening 3io0 fetched from pdb --- warning | WARNING: multiple experimental reflection datasets found: F_meas_au, F_meas_sigma_au, pdbx_F_plus, pdbx_F_plus_sigma, pdbx_F_minus, pdbx_F_minus_sigma, pdbx_anom_difference, pdbx_anom_difference_sigma, intensity_meas, intensity_sigma, pdbx_I_plus, pdbx_I_plus_sigma, pdbx_I_minus, pdbx_I_minus_sigma Automatically choosing ""intensity_meas, intensity_sigma"". notes | Resolution: 3.003 Reflection data provided as intensities. Performing French & Wilson scaling to convert to amplitudes... 3io0 title: Crystal structure of EtuB from Clostridium kluyveri [more info...] Chain information for 3io0 --- Chain | Description 1.1/A | EtuB protein 3io0 mmCIF Assemblies --- 1| author_and_software_defined_assembly Traceback (most recent call last): File ""C:\Program Files\ChimeraX-Daily\bin\lib\site- packages\chimerax\core\toolshed\info.py"", line 297, in _register_cmd api._api_caller.register_command(api, self, ci, logger) File ""C:\Program Files\ChimeraX-Daily\bin\lib\site- packages\chimerax\core\toolshed\\__init__.py"", line 1616, in register_command return cls._get_func(api, ""register_command"")(ci.name, logger) File ""C:\Users\tic20\AppData\Local\UCSF\ChimeraX\0.92\site- packages\chimerax\isolde\\__init__.py"", line 137, in register_command cmd.register_isolde(logger) File ""C:\Users\tic20\AppData\Local\UCSF\ChimeraX\0.92\site- packages\chimerax\isolde\cmd.py"", line 223, in register_isolde from chimerax.isolde.manipulations.cmd import register_manip_commands File ""C:\Users\tic20\AppData\Local\UCSF\ChimeraX\0.92\site- packages\chimerax\isolde\manipulations\\__init__.py"", line 11, in from .peptide_flip import Peptide_Bond_Flipper File ""C:\Users\tic20\AppData\Local\UCSF\ChimeraX\0.92\site- packages\chimerax\isolde\manipulations\peptide_flip.py"", line 11, in from ..constants import defaults File ""C:\Users\tic20\AppData\Local\UCSF\ChimeraX\0.92\site- packages\chimerax\isolde\constants.py"", line 14, in from simtk.openmm import VariableLangevinIntegrator, CustomGBForce File ""C:\Program Files\ChimeraX-Daily\bin\lib\site- packages\simtk\openmm\\__init__.py"", line 19, in from simtk.openmm.openmm import * File ""C:\Program Files\ChimeraX-Daily\bin\lib\site- packages\simtk\openmm\openmm.py"", line 28, in _openmm = swig_import_helper() File ""C:\Program Files\ChimeraX-Daily\bin\lib\site- packages\simtk\openmm\openmm.py"", line 24, in swig_import_helper _mod = imp.load_module('_openmm', fp, pathname, description) File ""C:\Program Files\ChimeraX-Daily\bin\lib\imp.py"", line 242, in load_module return load_dynamic(name, filename, file) File ""C:\Program Files\ChimeraX-Daily\bin\lib\imp.py"", line 342, in load_dynamic return _load(spec) ImportError: DLL load failed: The specified module could not be found. During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""C:\Program Files\ChimeraX-Daily\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2125, in lazy_register deferred.call() File ""C:\Program Files\ChimeraX-Daily\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2056, in call return self.proxy() File ""C:\Program Files\ChimeraX-Daily\bin\lib\site- packages\chimerax\core\toolshed\info.py"", line 287, in cb s._register_cmd(ci, l) File ""C:\Program Files\ChimeraX-Daily\bin\lib\site- packages\chimerax\core\toolshed\info.py"", line 300, in _register_cmd ""register_command() failed for command %s in bundle %s:\n%s"" % (ci.name, self.name, str(e))) chimerax.core.toolshed.ToolshedError: register_command() failed for command isolde in bundle ChimeraX-ISOLDE: DLL load failed: The specified module could not be found. During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""C:\Program Files\ChimeraX-Daily\bin\lib\site- packages\chimerax\cmd_line\tool.py"", line 258, in execute cmd.run(cmd_text) File ""C:\Program Files\ChimeraX-Daily\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2778, in run self._find_command_name(final, used_aliases=_used_aliases) File ""C:\Program Files\ChimeraX-Daily\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2521, in _find_command_name what.lazy_register(cmd_name) File ""C:\Program Files\ChimeraX-Daily\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2127, in lazy_register raise RuntimeError(""delayed command registration for %r failed (%s)"" % (cmd_name, e)) RuntimeError: delayed command registration for 'isolde' failed (register_command() failed for command isolde in bundle ChimeraX-ISOLDE: DLL load failed: The specified module could not be found.) RuntimeError: delayed command registration for 'isolde' failed (register_command() failed for command isolde in bundle ChimeraX-ISOLDE: DLL load failed: The specified module could not be found.) File ""C:\Program Files\ChimeraX-Daily\bin\lib\site- packages\chimerax\core\commands\cli.py"", line 2127, in lazy_register raise RuntimeError(""delayed command registration for %r failed (%s)"" % (cmd_name, e)) See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 426.00 OpenGL renderer: GeForce GTX 1070/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation }}} " defect closed critical Tool Shed fixed Greg Couch Tom Goddard Eric Pettersen all ChimeraX