id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 2763 Setting clip_cap property: 'Drawing' object has no attribute 'session' Tristan Croll Tom Goddard "{{{ The following bug report has been submitted: Platform: Linux-3.10.0-1062.9.1.el7.x86_64-x86_64-with-centos-7.7.1908-Core ChimeraX Version: 0.92 (2020-01-11) Description Experimenting with the `clip_cap` property. Seems this only works for subclasses of `Model`? Log: Startup Messages --- warning | 'clip' is a prefix of an existing command 'clipper' UCSF ChimeraX version: 0.92 (2020-01-11) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open 3io0 format mmCIF fromDatabase pdb structureFactors true Summary of feedback from opening 3io0 fetched from pdb --- warning | WARNING: multiple experimental reflection datasets found: F_meas_au, F_meas_sigma_au, pdbx_F_plus, pdbx_F_plus_sigma, pdbx_F_minus, pdbx_F_minus_sigma, pdbx_anom_difference, pdbx_anom_difference_sigma, intensity_meas, intensity_sigma, pdbx_I_plus, pdbx_I_plus_sigma, pdbx_I_minus, pdbx_I_minus_sigma Automatically choosing ""intensity_meas, intensity_sigma"". notes | Resolution: 3.003 Reflection data provided as intensities. Performing French & Wilson scaling to convert to amplitudes... 3io0 title: Crystal structure of EtuB from Clostridium kluyveri [more info...] Chain information for 3io0 --- Chain | Description 1.1/A | EtuB protein 3io0 mmCIF Assemblies --- 1| author_and_software_defined_assembly > toolshed show Shell /opt/UCSF/ChimeraX-daily/lib/python3.7/site- packages/IPython/core/history.py:226: UserWarning: IPython History requires SQLite, your history will not be saved warn(""IPython History requires SQLite, your history will not be saved"") Traceback (most recent call last): File ""/opt/UCSF/ChimeraX-daily/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 133, in _redraw_timer_callback drew = self.draw_new_frame() File ""/opt/UCSF/ChimeraX-daily/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 62, in draw_new_frame surface.update_clip_caps(view) File ""/opt/UCSF/ChimeraX-daily/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/opt/UCSF/ChimeraX-daily/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 43, in show_surface_clip_caps set_cap_drawing_geometry(d, p.name, varray, narray, tarray) File ""/opt/UCSF/ChimeraX-daily/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 172, in set_cap_drawing_geometry cm = new_cap(d.session, d, cap_name) AttributeError: 'Drawing' object has no attribute 'session' AttributeError: 'Drawing' object has no attribute 'session' File ""/opt/UCSF/ChimeraX-daily/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 172, in set_cap_drawing_geometry cm = new_cap(d.session, d, cap_name) See log for complete Python traceback. Traceback (most recent call last): File ""/opt/UCSF/ChimeraX-daily/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 133, in _redraw_timer_callback drew = self.draw_new_frame() File ""/opt/UCSF/ChimeraX-daily/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 62, in draw_new_frame surface.update_clip_caps(view) File ""/opt/UCSF/ChimeraX-daily/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/opt/UCSF/ChimeraX-daily/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 43, in show_surface_clip_caps set_cap_drawing_geometry(d, p.name, varray, narray, tarray) File ""/opt/UCSF/ChimeraX-daily/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 172, in set_cap_drawing_geometry cm = new_cap(d.session, d, cap_name) AttributeError: 'Drawing' object has no attribute 'session' AttributeError: 'Drawing' object has no attribute 'session' File ""/opt/UCSF/ChimeraX-daily/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 172, in set_cap_drawing_geometry cm = new_cap(d.session, d, cap_name) See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 440.33.01 OpenGL renderer: TITAN Xp/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation }}} " defect closed normal Graphics fixed all ChimeraX