id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 2700 Can't open .pyc file chimerax-bug-report@… Greg Couch "{{{ The following bug report has been submitted: Platform: Linux-3.10.0-514.21.1.el7.x86_64-x86_64-with-centos-7.3.1611-Core ChimeraX Version: 0.9 (2019-06-06) Description (Describe the actions that caused this problem to occur here) Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 0.9 (2019-06-06) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /data/wangchy/linux/Desktop/MICUs_Paper/Model_in_maps_ver2/post459_first_6_frames.mrc Opened post459_first_6_frames.mrc, grid size 300,300,300, pixel 1.06, shown at level -2.36e-06, step 2, values float32 > volume #1 orthoplanes xyz positionPlanes 149,149,149 > volume #1 orthoplanes xyz positionPlanes 149,149,149 > volume #1 region 126,0,0,126,299,299 > volume #1 region 144,0,0,144,299,299 > show #!1.1 models > hide #!1.2 models > volume #1 region 157,0,0,157,299,299 > select #1.1 2 models selected > hide #!1.1 models > show #!1.1 models > close #1 > open /data/wangchy/linux/Desktop/MICUs_Paper/Model_in_maps_ver2/post459_first_6_frames.mrc Opened post459_first_6_frames.mrc, grid size 300,300,300, pixel 1.06, shown at level -2.36e-06, step 2, values float32 > volume #1 region 0,0,209,299,299,209 > volume #1 region 0,0,208,299,299,208 > show #!1.1 models > hide #!1.2 models > show #!1.2 models > select #1 3 models selected > select #1 3 models selected > volume #1 region 0,0,22,299,299,22 > lighting simple > close #1 > open /data/wangchy/linux/Desktop/MICUs_Paper/Model_in_maps/maps/WCY95B_relion_job037_postprocess76_B50_aligned.mrc Opened WCY95B_relion_job037_postprocess76_B50_aligned.mrc, grid size 304,304,304, pixel 1.09, shown at level 0.00549, step 2, values float32 > volume #1 region 174,0,0,174,303,303 > volume #1 region 215,0,0,215,303,303 > volume #1 region 148,0,0,148,303,303 > volume #1 region 152,0,0,152,303,303 > volume #1 region 160,0,0,160,303,303 > help help:user > volume #1 region 151,0,0,151,303,303 > show #!1.1 models > hide #!1.2 models > show #!1.2 models > hide #!1.1 models > show #!1.1 models > close #1.2 > hide #!1 models > show #!1 models > hide #!1 models > hide #!1.1 models > show #!1.1 models > volume #1 region 145,0,0,145,303,303 > volume #1 region 126,0,0,126,303,303 > select #1 2 models selected > ~select #1.1 1 model selected > save /data/wangchy/linux/Desktop/image1.png supersample 3 > close #1 > set bgColor #ffffff > open /ssd_polar/wangchy/WCY95B/Figures/Figure1/color2_ver6.py ChimeraX cannot open a regular Chimera session. An exporter from Chimera to ChimeraX is being worked on but is not ready at this time. > open /ssd_polar/wangchy/WCY95B/Figures/Figure1/color2_ver6.pyc Traceback (most recent call last): File ""/programs/x86_64-linux/chimerax/0.9/lib/python3.7/site- packages/chimerax/toolbar/tool.py"", line 141, in lambda e, what=what, self=self: self.handle_scheme(what), File ""/programs/x86_64-linux/chimerax/0.9/lib/python3.7/site- packages/chimerax/toolbar/tool.py"", line 96, in handle_scheme run(self.session, f'{value}') File ""/programs/x86_64-linux/chimerax/0.9/lib/python3.7/site- packages/chimerax/core/commands/run.py"", line 31, in run results = command.run(text, log=log) File ""/programs/x86_64-linux/chimerax/0.9/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2632, in run result = ci.function(session, **kw_args) File ""/programs/x86_64-linux/chimerax/0.9/lib/python3.7/site- packages/chimerax/core/commands/open.py"", line 64, in open path_models = session.models.open(paths, format=format, name=name, **kw) File ""/programs/x86_64-linux/chimerax/0.9/lib/python3.7/site- packages/chimerax/core/models.py"", line 604, in open session, filenames, format=format, name=name, **kw) File ""/programs/x86_64-linux/chimerax/0.9/lib/python3.7/site- packages/chimerax/core/io.py"", line 477, in open_multiple_data models, status = open_data(session, fspec, format=format, name=name, **kw) File ""/programs/x86_64-linux/chimerax/0.9/lib/python3.7/site- packages/chimerax/core/io.py"", line 431, in open_data models, status = open_func(*args, **kw) File ""/programs/x86_64-linux/chimerax/0.9/lib/python3.7/site- packages/chimerax/core/scripting.py"", line 57, in open_python_script code = compile(data, file_name, 'exec') ValueError: source code string cannot contain null bytes ValueError: source code string cannot contain null bytes File ""/programs/x86_64-linux/chimerax/0.9/lib/python3.7/site- packages/chimerax/core/scripting.py"", line 57, in open_python_script code = compile(data, file_name, 'exec') See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 375.66 OpenGL renderer: Quadro M2000/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation }}} " defect closed normal Input/Output fixed all ChimeraX