id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 2697 Graphics problem drawing silhouettes chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Linux-4.4.0-170-generic-x86_64-with-debian-stretch-sid ChimeraX Version: 0.91 (2019-06-29) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 0.91 (2019-06-29) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /data/disk3/modeling/gp17/Figure4-20191123.cxs format session opened ChimeraX session > hide #!21 models > open /data/disk3/modeling/Chan-masked-hp.mrc Opened Chan-masked-hp.mrc, grid size 128,128,128, pixel 5.4, shown at level 0.175, step 1, values float32 > select #7 2 models selected > ui mousemode rightMode ""rotate selected models"" > ui mousemode rightMode ""translate selected models"" > ui mousemode rightMode ""rotate selected models"" > ui mousemode rightMode ""translate selected models"" > ui mousemode rightMode ""rotate selected models"" > save session /data/disk3/modeling/Figure5-20191217.cxs > hide #!7 models > show #!7 models > hide #!23 models > show #!23 models > fitmap #7 inMap #23 Fit map Chan-masked-hp.mrc in map gp12-new.mrc using 20980 points correlation = 0.3225, correlation about mean = 0.2001, overlap = 7.571 steps = 460, shift = 5.15, angle = 3.81 degrees Position of Chan-masked-hp.mrc (#7) relative to gp12-new.mrc (#23) coordinates: Matrix rotation and translation -0.16132834 0.98541505 0.05413202 -296.75005654 -0.98669783 -0.16216464 0.01140082 396.62874959 0.02001284 -0.05157267 0.99846867 -291.22590686 Axis -0.03191095 0.01728943 -0.99934117 Axis point 22.45242000 317.64939384 0.00000000 Rotation angle (degrees) 99.35274093 Shift along axis 307.36109815 Expected a keyword Unknown command: dust #7 size 50 > surface dust #7 size 50 > transparency #7 50 > transparency #7 70 > lighting soft > lighting simple > lighting soft > transparency #7 30 > transparency #7 50 > lighting soft > lighting simple > lighting full > lighting soft > lighting simple > hide #!4 models > hide #!7 models > show #!7 models > ~select #7 Nothing selected > hide #!7 models > show #!7 models > show #!11 models > surface dust #11 size 50 > hide #!11 models > show #!11 models > close #11 > show #!58 models > surface dust #58 size 50 > show #!27 models > hide #!58 models > surface dust #27 size 50 > transparency #7 70 > save session /data/disk3/modeling/Figure5-20191217.cxs > hide #!7 models > show #!7 models > show #!21 models > hide #!21 models > save /data/disk3/Paper-use/tail-fiber-20191219-1.tif pixelSize 0.1 supersample 10 transparentBackground true > open /data/disk3/modeling/fiber-arm-leg.mrc Opened fiber-arm-leg.mrc, grid size 360,360,360, pixel 1.05, shown at level 0.000124, step 2, values float32 > lighting flat > lighting soft > select #8 2 models selected > ui mousemode rightMode ""translate selected models"" > ui mousemode rightMode ""rotate selected models"" > ui mousemode rightMode ""rotate selected models"" > view cofr false > ~select #8 Nothing selected > select #8 2 models selected > ui mousemode rightMode ""rotate selected models"" > ui mousemode rightMode ""translate selected models"" > ui mousemode rightMode ""rotate selected models"" > ui mousemode rightMode ""rotate selected models"" > ui mousemode rightMode ""translate selected models"" > ui mousemode rightMode ""translate selected models"" > ui mousemode rightMode ""rotate selected models"" > ui mousemode rightMode ""translate selected models"" > ui mousemode rightMode ""rotate selected models"" > ui mousemode rightMode ""translate selected models"" > fitmap #8 inMap #7 Fit map fiber-arm-leg.mrc in map Chan-masked-hp.mrc using 24257 points correlation = 0.6018, correlation about mean = 0.05074, overlap = 25.25 steps = 92, shift = 12.2, angle = 5.16 degrees Position of fiber-arm-leg.mrc (#8) relative to Chan-masked-hp.mrc (#7) coordinates: Matrix rotation and translation -0.02319024 0.07336118 0.99703562 229.84078118 -0.99588401 0.08570983 -0.02946993 356.01015940 -0.08761772 -0.99361545 0.07107161 474.62330341 Axis -0.53486646 0.60171901 -0.59317123 Axis point 462.19647025 0.00000000 345.85712069 Rotation angle (degrees) 115.67109568 Shift along axis -190.24893161 > lighting soft > lighting simple > lighting soft > lighting simple > lighting soft > lighting soft > lighting simple > lighting flat > lighting full > lighting shadows false > lighting soft > lighting simple > select clear > hide #!8 models > show #!8 models > hide #!27 models > show #!27 models > hide #!17 models > show #!17 models > hide #!7 models > hide #!8 models > show #!8 models > show #!10 models > hide #!10 models > show #!10 models > hide #!10 models > close #10 > show #!8 models > hide #!8 models > show #!8 models > select #8 2 models selected > ui mousemode rightMode ""translate selected models"" > ui mousemode rightMode ""rotate selected models"" > ui mousemode rightMode ""translate selected models"" > ui mousemode rightMode ""translate selected models"" > ui mousemode rightMode ""rotate selected models"" > ui mousemode rightMode ""translate selected models"" > ui mousemode rightMode ""rotate selected models"" > ui mousemode rightMode ""translate selected models"" > ui mousemode rightMode ""rotate selected models"" > ui mousemode rightMode ""translate selected models"" > ui mousemode rightMode ""rotate selected models"" > ui mousemode rightMode ""translate selected models"" An error occurred in drawing the scene. Redrawing graphics is now stopped to avoid a continuous stream of error messages. To restart graphics use the command ""graphics restart"" after changing the settings that caused the error. Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 72, in draw_new_frame view.draw(check_for_changes = False) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/core/graphics/view.py"", line 164, in draw self._draw_scene(camera, drawings) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/core/graphics/view.py"", line 234, in _draw_scene silhouette.finish_silhouette_drawing(r) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 1623, in finish_silhouette_drawing fb = r.pop_framebuffer() File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 624, in pop_framebuffer fb.activate() File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/core/graphics/opengl.py"", line 2077, in activate GL.glDrawBuffer(self._draw_buffer) File ""src/errorchecker.pyx"", line 53, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1282, description = b'invalid operation', baseOperation = glDrawBuffer, cArguments = (GL_BACK,) ) OpenGL version: 3.3.0 NVIDIA 384.130 OpenGL renderer: Quadro K2200/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation }}} " defect closed normal Graphics can't reproduce all ChimeraX