id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 2657 Basic Actions: 'None' in restored model list yann.sterckx@… Conrad Huang "{{{ The following bug report has been submitted: Platform: Darwin-17.7.0-x86_64-i386-64bit ChimeraX Version: 0.9 (2019-06-06) Description Dear, I saved all of my prpgress in this session, but for some reason I do not understand, I can no longer open this session. I would like to understand why this happened such that I don't lose hours of work again in the future. (the error message is listed below) Many thanks and kind regards Yann Unable to restore session, resetting. Traceback (most recent call last): File ""/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/core/session.py"", line 596, in restore obj = sm.restore_snapshot(self, data) File ""/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/basic_actions/statemgr.py"", line 65, in restore_snapshot cmd.name_frozen(session, name, Objects(**value)) File ""/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/basic_actions/cmd.py"", line 51, in name_frozen if objects.empty(): File ""/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/core/objects.py"", line 199, in empty self._remove_deleted_models() File ""/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/core/objects.py"", line 127, in _remove_deleted_models mdel = [m for m in mset if m.deleted] File ""/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/core/objects.py"", line 127, in mdel = [m for m in mset if m.deleted] AttributeError: 'NoneType' object has no attribute 'deleted' Log: Startup Messages --- warning | 'clip' is a prefix of an existing command 'clipper' > lighting depthCue false > cartoon style strand thickness 0.6 > cartoon style helix thickness 0.6 > cartoon style coil thickness 0.2 > cartoon style protein xsection rectangle > set silhouetteWidth 1.5 UCSF ChimeraX version: 0.9 (2019-06-06) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/yannsterckx/Desktop/Research_Projects/Chikungunya/Chikungunya_basigin.cxs Unable to restore session, resetting. Traceback (most recent call last): File ""/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/session.py"", line 596, in restore obj = sm.restore_snapshot(self, data) File ""/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/basic_actions/statemgr.py"", line 65, in restore_snapshot cmd.name_frozen(session, name, Objects(**value)) File ""/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/basic_actions/cmd.py"", line 51, in name_frozen if objects.empty(): File ""/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/objects.py"", line 199, in empty self._remove_deleted_models() File ""/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/objects.py"", line 127, in _remove_deleted_models mdel = [m for m in mset if m.deleted] File ""/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/objects.py"", line 127, in mdel = [m for m in mset if m.deleted] AttributeError: 'NoneType' object has no attribute 'deleted' opened ChimeraX session > open /Users/yannsterckx/Desktop/Research_Projects/Chikungunya/Chikungunya_basigin.cxs Unable to restore session, resetting. Traceback (most recent call last): File ""/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/session.py"", line 596, in restore obj = sm.restore_snapshot(self, data) File ""/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/basic_actions/statemgr.py"", line 65, in restore_snapshot cmd.name_frozen(session, name, Objects(**value)) File ""/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/basic_actions/cmd.py"", line 51, in name_frozen if objects.empty(): File ""/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/objects.py"", line 199, in empty self._remove_deleted_models() File ""/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/objects.py"", line 127, in _remove_deleted_models mdel = [m for m in mset if m.deleted] File ""/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/objects.py"", line 127, in mdel = [m for m in mset if m.deleted] AttributeError: 'NoneType' object has no attribute 'deleted' opened ChimeraX session > open /Users/yannsterckx/Desktop/Research_Projects/Chikungunya/Chikungunya_basigin.cxs Unable to restore session, resetting. Traceback (most recent call last): File ""/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/session.py"", line 596, in restore obj = sm.restore_snapshot(self, data) File ""/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/basic_actions/statemgr.py"", line 65, in restore_snapshot cmd.name_frozen(session, name, Objects(**value)) File ""/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/basic_actions/cmd.py"", line 51, in name_frozen if objects.empty(): File ""/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/objects.py"", line 199, in empty self._remove_deleted_models() File ""/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/objects.py"", line 127, in _remove_deleted_models mdel = [m for m in mset if m.deleted] File ""/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/objects.py"", line 127, in mdel = [m for m in mset if m.deleted] AttributeError: 'NoneType' object has no attribute 'deleted' opened ChimeraX session OpenGL version: 4.1 ATI-1.68.20 OpenGL renderer: AMD Radeon Pro 560 OpenGL Engine OpenGL vendor: ATI Technologies Inc. }}} " defect closed normal Sessions duplicate all ChimeraX