id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
263	Traceback opening unknown pdb id code	Tom Goddard	Greg Couch	"Opening a pdb id code that doesn't exist should give a simple error message -- getting a traceback now.


open 555z

Traceback (most recent call last):
File ""/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/cmd_line/gui.py"", line 120, in on_enter
cmd.run(cmd_text)
File ""/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/core/commands/cli.py"", line 2122, in run
results.append(ci.function(session, **kw_args))
File ""/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/core/commands/open.py"", line 53, in open
format=format, name=name, ignore_cache=ignore_cache)
File ""/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/core/fetch.py"", line 212, in fetch_from_database
models, status = df.fetch(session, id, format=format, ignore_cache=ignore_cache)
File ""/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/core/fetch.py"", line 247, in fetch
return fetch(session, database_id, ignore_cache=ignore_cache)
File ""/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/core/atomic/mmcif.py"", line 64, in fetch_mmcif
models, status = io.open_data(session, filename, format = 'mmcif', name = pdb_id)
File ""/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/core/io.py"", line 513, in open_data
models, status = open_func(session, stream, dname, **kw)
File ""/Users/goddard/ucsf/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/core/atomic/mmcif.py"", line 33, in open_mmcif
pointers = _mmcif.parse_mmCIF_file(filename, _additional_categories, session.logger)
_mmcif.error: unexpected data value on line 1
"	defect	closed	major		Input/Output		fixed						all	ChimeraX