id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 2637 Surface capping: Array argument has non-numeric values chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Darwin-18.7.0-x86_64-i386-64bit ChimeraX Version: 0.91 (2019-07-30) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 0.91 (2019-07-30) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/jardetz/Desktop/Papers/HCMV trimer/structures/J79_map_invert.mrc"" File not found: /Users/jardetz/Desktop/Papers/HCMV trimer/structures/J79_map_invert.mrc > open ""/Users/jardetz/Desktop/Papers/HCMV trimer/structures/J79_map_invert.mrc"" File not found: /Users/jardetz/Desktop/Papers/HCMV trimer/structures/J79_map_invert.mrc > open ""/Users/jardetz/Desktop/Papers/HCMV trimer Structure/structures/J79_map_invert.mrc"" Opened J79_map_invert.mrc, grid size 288,288,288, pixel 1.06, shown at level 0.294, step 2, values float32 > open ""/Users/jardetz/Desktop/Papers/HCMV trimer Structure/structures/gHgL_PDGFRamodel_fitJ79_chains.pdb"" Summary of feedback from opening /Users/jardetz/Desktop/Papers/HCMV trimer Structure/structures/gHgL_PDGFRamodel_fitJ79_chains.pdb --- warnings | Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 6096 messages similar to the above omitted Chain information for gHgL_PDGFRamodel_fitJ79_chains.pdb #2 --- Chain | Description A | No description available B | No description available C | No description available D | No description available > set bgColor white > select clear > view #2 clip false > style selAtoms stick Changed 17 atom styles > style selAtoms stick Changed 17 atom styles > style selAtoms stick Changed 17 atom styles > style selAtoms stick Changed 17 atom styles > style selAtoms stick Changed 17 atom styles > show selAtoms > hide selAtoms ribbons > hide selAtoms ribbons > hide selAtoms ribbons > show selAtoms > select 20493 atoms, 20726 bonds, 2 pseudobonds, 4 models selected > hide selAtoms ribbons > style selAtoms stick Changed 20493 atom styles > show selAtoms > nucleotides selAtoms atoms > style nucleic & selAtoms stick Changed 0 atom styles > nucleotides selAtoms fill > style nucleic & selAtoms stick Changed 0 atom styles > style selAtoms stick Changed 20493 atom styles > style selAtoms stick Changed 20493 atom styles > color selAtoms bychain > ~hbonds > rainbow selAtoms > hide selAtoms > nucleotides selAtoms atoms > style nucleic & selAtoms stick Changed 0 atom styles > show selAtoms ribbons > hide selAtoms ribbons > show selAtoms ribbons > toolshed show ""Side View"" Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 128, in _redraw_timer_callback if not self.draw_new_frame(): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/updateloop.py"", line 61, in draw_new_frame surface.update_clip_caps(view) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 27, in update_clip_caps subdivision = settings.clipping_cap_subdivision) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) TypeError: Array argument has non-numeric values TypeError: Array argument has non-numeric values File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/surface/cap.py"", line 38, in show_surface_clip_caps varray, tarray = refine_mesh(varray, tarray, subdivision) See log for complete Python traceback. OpenGL version: 4.1 NVIDIA-12.0.24 355.11.10.50.10.103 OpenGL renderer: NVIDIA GeForce GT 650M OpenGL Engine OpenGL vendor: NVIDIA Corporation }}} " defect closed normal Surface duplicate all ChimeraX