id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 2621 "deleting scraggly parts of models from Modeller gives Error processing trigger ""modified""" Elaine Meng Eric Pettersen "open 3bp5 open uniprot:pdcd1_human sequence associate /A pdcd1_human toolshed show ""Modeller Comparative"" modeller comparative pdcd1_human:1 multichain true numModels 3 fast false hetPreserve false hydrogens false waterPreserve false [... select untemplated part by clicking inside gray box in Sequence] del sel Traceback (most recent call last): File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/core/triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/seqalign/alignment.py"", line 520, in _mmap_mod_cb self._notify_observers(""modify association"", (""modify association"", [match_map])) File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/seqalign/alignment.py"", line 531, in _notify_observers recipient.alignment_notification(note_name, note_data) File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/seq-view/tool.py"", line 450, in alignment_notification self.seq_canvas.assoc_mod(aseq) File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/seq-view/seq_canvas.py"", line 417, in assoc_mod self.lead_block.assoc_mod(aseq) File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/seq-view/seq_canvas.py"", line 1703, in assoc_mod self._assoc_res_bind(item, aseq, self.seq_offset+i) File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/seq-view/seq_canvas.py"", line 1679, in _assoc_res_bind item.setToolTip(self._mouse_res_text(aseq, index)) File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/seq-view/seq_canvas.py"", line 2371, in _mouse_res_text res_text = ""\n"".join([str(r) for r in residues]) File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/seq-view/seq_canvas.py"", line 2371, in res_text = ""\n"".join([str(r) for r in residues]) File ""cymol.pyx"", line 876, in chimerax.atomic.cymol.CyResidue.__str__ File ""cymol.pyx"", line 1484, in chimerax.atomic.cymol.CyResidue.string File ""cymol.pyx"", line 1040, in chimerax.atomic.cymol.CyResidue.insertion_code.__get__ RuntimeError: Residue already deleted Error processing trigger ""modified"": RuntimeError: Residue already deleted File ""cymol.pyx"", line 1040, in chimerax.atomic.cymol.CyResidue.insertion_code.__get__ See log for complete Python traceback. Traceback (most recent call last): File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/core/triggerset.py"", line 130, in invoke return self._func(self._name, data) File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/seqalign/alignment.py"", line 520, in _mmap_mod_cb self._notify_observers(""modify association"", (""modify association"", [match_map])) File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/seqalign/alignment.py"", line 531, in _notify_observers recipient.alignment_notification(note_name, note_data) File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/seq-view/tool.py"", line 450, in alignment_notification self.seq_canvas.assoc_mod(aseq) File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/seq-view/seq_canvas.py"", line 417, in assoc_mod self.lead_block.assoc_mod(aseq) File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/seq-view/seq_canvas.py"", line 1703, in assoc_mod self._assoc_res_bind(item, aseq, self.seq_offset+i) File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/seq-view/seq_canvas.py"", line 1679, in _assoc_res_bind item.setToolTip(self._mouse_res_text(aseq, index)) File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/seq-view/seq_canvas.py"", line 2371, in _mouse_res_text res_text = ""\n"".join([str(r) for r in residues]) File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/seq-view/seq_canvas.py"", line 2371, in res_text = ""\n"".join([str(r) for r in residues]) File ""cymol.pyx"", line 876, in chimerax.atomic.cymol.CyResidue.__str__ File ""cymol.pyx"", line 1484, in chimerax.atomic.cymol.CyResidue.string File ""cymol.pyx"", line 1040, in chimerax.atomic.cymol.CyResidue.insertion_code.__get__ RuntimeError: Residue already deleted Error processing trigger ""modified"": RuntimeError: Residue already deleted File ""cymol.pyx"", line 1040, in chimerax.atomic.cymol.CyResidue.insertion_code.__get__ See log for complete Python traceback." defect closed moderate Sequence fixed all ChimeraX