id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 2586 fmt.category is a set chimerax-bug-report@… Greg Couch "{{{ The following bug report has been submitted: Platform: Darwin-18.6.0-x86_64-i386-64bit ChimeraX Version: 0.91 (2019-09-13) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 0.91 (2019-09-13) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""5VKO"" format mmCIF fromDatabase pdb 5vko title: SPT6 tSH2-RPB1 1468-1500 pT1471, pS1493 [more info...] Chain information for 5vko #1 --- Chain | Description A | Transcription elongation factor SPT6 B | DNA-directed RNA polymerase II subunit RPB1 Non-standard residues in 5vko #1 --- IPA — isopropyl alcohol (2-propanol) > split #1 Chain information for 5vko A #1.1 --- Chain | Description A | No description available Chain information for 5vko B #1.2 --- Chain | Description B | No description available Split 5vko (#1) into 2 models > hide #!1.1 models > show #!1.1 models > hide #!1.2 models Missing or invalid ""atoms"" argument: invalid atoms specifier > select :IPA 12 atoms, 11 bonds, 1 model selected > delete sel > lighting flat > lighting full > lighting full > lighting soft > lighting simple > lighting soft > graphics silhouettes false > lighting shadows true intensity 0.5 > lighting flat > lighting flat > lighting shadows true intensity 0.5 > graphics silhouettes false > graphics silhouettes true > lighting soft > lighting simple > mlp #1.1 Map values for surface ""5vko A_A SES surface"": minimum -27.51, mean -3.801, maximum 26.79 > color bfactor #!1.1 3351 atoms, 348 residues, 1 surfaces, atom bfactor range 19.2 to 152 > rainbow #!1.1 > hide #!1.1 surfaces > color #!1.1 bychain > color #!1.1 byhetero > color bfactor #!1.1 3351 atoms, 348 residues, 1 surfaces, atom bfactor range 19.2 to 152 > mlp #!1.1 Map values for surface ""5vko A_A SES surface"": minimum -27.51, mean -3.801, maximum 26.79 > rainbow #!1.1 > hide #!1.1 surfaces > show #!1.1 cartoons > color #!1.1 bychain > interfaces #!1.1 & ~solvent 0 buried areas: > save ""/Users/aiste/Desktop/image1.png"" supersample 3 > close #1 Traceback (most recent call last): File ""/private/var/folders/qh/4bjhqvl96qvgvzdfnmcs9d9h0000gs/T/AppTranslocation/BDCFD1CC-F091-4576-9AC2-28BED6BE36A7/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/ui/gui.py"", line 862, in open_action.triggered.connect(lambda arg, s=self, sess=session: s.file_open_cb(sess)) File ""/private/var/folders/qh/4bjhqvl96qvgvzdfnmcs9d9h0000gs/T/AppTranslocation/BDCFD1CC-F091-4576-9AC2-28BED6BE36A7/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/ui/gui.py"", line 571, in file_open_cb self.show_file_open_dialog(session) File ""/private/var/folders/qh/4bjhqvl96qvgvzdfnmcs9d9h0000gs/T/AppTranslocation/BDCFD1CC-F091-4576-9AC2-28BED6BE36A7/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/ui/gui.py"", line 579, in show_file_open_dialog filters = open_file_filter(all=True, format_name=format_name) File ""/private/var/folders/qh/4bjhqvl96qvgvzdfnmcs9d9h0000gs/T/AppTranslocation/BDCFD1CC-F091-4576-9AC2-28BED6BE36A7/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/ui/open_save.py"", line 137, in open_file_filter exts = combine.setdefault(fmt.category, []) TypeError: unhashable type: 'set' TypeError: unhashable type: 'set' File ""/private/var/folders/qh/4bjhqvl96qvgvzdfnmcs9d9h0000gs/T/AppTranslocation/BDCFD1CC-F091-4576-9AC2-28BED6BE36A7/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/ui/open_save.py"", line 137, in open_file_filter exts = combine.setdefault(fmt.category, []) See log for complete Python traceback. Traceback (most recent call last): File ""/private/var/folders/qh/4bjhqvl96qvgvzdfnmcs9d9h0000gs/T/AppTranslocation/BDCFD1CC-F091-4576-9AC2-28BED6BE36A7/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/ui/gui.py"", line 862, in open_action.triggered.connect(lambda arg, s=self, sess=session: s.file_open_cb(sess)) File ""/private/var/folders/qh/4bjhqvl96qvgvzdfnmcs9d9h0000gs/T/AppTranslocation/BDCFD1CC-F091-4576-9AC2-28BED6BE36A7/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/ui/gui.py"", line 571, in file_open_cb self.show_file_open_dialog(session) File ""/private/var/folders/qh/4bjhqvl96qvgvzdfnmcs9d9h0000gs/T/AppTranslocation/BDCFD1CC-F091-4576-9AC2-28BED6BE36A7/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/ui/gui.py"", line 579, in show_file_open_dialog filters = open_file_filter(all=True, format_name=format_name) File ""/private/var/folders/qh/4bjhqvl96qvgvzdfnmcs9d9h0000gs/T/AppTranslocation/BDCFD1CC-F091-4576-9AC2-28BED6BE36A7/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/ui/open_save.py"", line 137, in open_file_filter exts = combine.setdefault(fmt.category, []) TypeError: unhashable type: 'set' TypeError: unhashable type: 'set' File ""/private/var/folders/qh/4bjhqvl96qvgvzdfnmcs9d9h0000gs/T/AppTranslocation/BDCFD1CC-F091-4576-9AC2-28BED6BE36A7/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/ui/open_save.py"", line 137, in open_file_filter exts = combine.setdefault(fmt.category, []) See log for complete Python traceback. OpenGL version: 4.1 ATI-2.9.26 OpenGL renderer: AMD Radeon HD - FirePro D700 OpenGL Engine OpenGL vendor: ATI Technologies Inc. }}} " defect closed normal Input/Output can't reproduce Tom Goddard all ChimeraX