id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
2562	ViewdockX Hbonds/clashes needs to be smarter about which sets of atoms should be compared	Elaine Meng	Eric Pettersen	"For induced-fit results, each ligand has its own receptor conformation, so only the interactions between those two would be relevant.  Would need to use two atomspecs in the command.

There may be other pathological situations, but basically need a best guess as to which receptor conformation goes with a ligand: same receptor model for all ligands, or a different one per ligand that might be in the same submodel as the ligand.

However, it looks like the Maestro induced-fit results already have H-bonds information, so hopefully people will not be using these buttons with them anyway."	defect	assigned	moderate		Surface/Binding Analysis								all	ChimeraX