id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 2544 Wrong version of Clipper installed craig.morton@… Tristan Croll "{{{ The following bug report has been submitted: Platform: Linux-3.10.0-693.2.2.el7.x86_64-x86_64-with-centos-7.6.1810-Core ChimeraX Version: 0.9 (2019-06-06) Description Any scrolling with an active map. Note that I'm an absolute novice with ChimeraX and may have done something wrong! Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 0.9 (2019-06-06) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX Downloading bundle ChimeraX_ISOLDE-1.0b3-cp37-cp37m-linux_x86_64.whl Downloading bundle ChimeraX_ISOLDE-1.0b3-cp37-cp37m-linux_x86_64.whl Looking in indexes: https://pypi.org/simple, https://cxtoolshed.rbvi.ucsf.edu/pypi/ Processing /home/UNIMELB/cmorton2/Downloads/ChimeraX_ISOLDE-1.0b3-cp37-cp37m-linux_x86_64.whl Requirement already satisfied, skipping upgrade: ChimeraX-Atomic>=0.7 in /opt/UCSF/ChimeraX/lib/python3.7/site-packages (from ChimeraX-ISOLDE==1.0b3) (1.0) Collecting ChimeraX-Clipper>=0.9.4 (from ChimeraX-ISOLDE==1.0b3) Downloading https://cxtoolshed.rbvi.ucsf.edu/media/chimeraxclipper/releases/0.9.10/ChimeraX_Clipper-0.9.10-cp37-cp37m-linux_x86_64.whl (26.7MB) Requirement already satisfied, skipping upgrade: ChimeraX-Core==0.9 in /opt/UCSF/ChimeraX/lib/python3.7/site-packages (from ChimeraX-ISOLDE==1.0b3) (0.9) Installing collected packages: ChimeraX-Clipper, ChimeraX-ISOLDE chimerax-clipper 0.9.10 has requirement ChimeraX-Core==0.91, but you'll have chimerax-core 0.9 which is incompatible. Could not install packages due to an EnvironmentError: [Errno 13] Permission denied: '/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/clipper' Consider using the `--user` option or check the permissions. You are using pip version 19.0.3, however version 19.3.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. QXcbConnection: XCB error: 3 (BadWindow), sequence: 4553, resource id: 31966523, major code: 40 (TranslateCoords), minor code: 0 Bundle installation canceled QXcbConnection: XCB error: 3 (BadWindow), sequence: 6311, resource id: 31969141, major code: 40 (TranslateCoords), minor code: 0 Downloading bundle ChimeraX_ISOLDE-1.0b3-cp37-cp37m-linux_x86_64.whl Successfully installed ChimeraX-Clipper-0.9.10 ChimeraX-ISOLDE-1.0b3 Installed ChimeraX-Clipper (0.9.10) Installed ChimeraX-ISOLDE (1.0b3) 'clip' is a prefix of an existing command 'clipper' QXcbConnection: XCB error: 3 (BadWindow), sequence: 7085, resource id: 31980409, major code: 40 (TranslateCoords), minor code: 0 > toolshed show ISOLDE > set selectionWidth 4 Done loading forcefield > open /home/UNIMELB/cmorton2/work/bio21/malaria/proteasome/cryoem/20SBTZ/CurrentBest/Pf20S_4BO2_HV_SS_21_real_space_refined.pdb Chain information for Pf20S_4BO2_HV_SS_21_real_space_refined.pdb #1 --- Chain | Description A O | No description available B P | No description available C Q | No description available D R | No description available E S | No description available F T | No description available G U | No description available H V | No description available I W | No description available J X | No description available K Y | No description available L Z | No description available M a | No description available N b | No description available Chain information for Pf20S_4BO2_HV_SS_21_real_space_refined.pdb --- Chain | Description 1.3/A 1.3/O | No description available 1.3/B 1.3/P | No description available 1.3/C 1.3/Q | No description available 1.3/D 1.3/R | No description available 1.3/E 1.3/S | No description available 1.3/F 1.3/T | No description available 1.3/G 1.3/U | No description available 1.3/H 1.3/V | No description available 1.3/I 1.3/W | No description available 1.3/J 1.3/X | No description available 1.3/K 1.3/Y | No description available 1.3/L 1.3/Z | No description available 1.3/M 1.3/a | No description available 1.3/N 1.3/b | No description available QXcbConnection: XCB error: 3 (BadWindow), sequence: 14999, resource id: 32174328, major code: 40 (TranslateCoords), minor code: 0 > open /home/UNIMELB/cmorton2/work/bio21/malaria/proteasome/cryoem/20SBTZ/maps/Corrected_sharpened_map.ccp4 Unrecognized file suffix '.ccp4' Unrecognized file suffix '.ccp4' QXcbConnection: XCB error: 3 (BadWindow), sequence: 16140, resource id: 32176694, major code: 40 (TranslateCoords), minor code: 0 > open /home/UNIMELB/cmorton2/work/bio21/malaria/proteasome/cryoem/20SBTZ/maps/sharpened_map_coeffs.mtz Must specify a structure model to associate with crystallographic data Must specify a structure model to associate with crystallographic data QXcbConnection: XCB error: 3 (BadWindow), sequence: 26229, resource id: 32184405, major code: 40 (TranslateCoords), minor code: 0 Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 457, in _wheel_event f.wheel(MouseEvent(event)) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 457, in _wheel_event f.wheel(MouseEvent(event)) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 457, in _wheel_event f.wheel(MouseEvent(event)) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 457, in _wheel_event f.wheel(MouseEvent(event)) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 457, in _wheel_event f.wheel(MouseEvent(event)) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 457, in _wheel_event f.wheel(MouseEvent(event)) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 457, in _wheel_event f.wheel(MouseEvent(event)) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 457, in _wheel_event f.wheel(MouseEvent(event)) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 457, in _wheel_event f.wheel(MouseEvent(event)) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 457, in _wheel_event f.wheel(MouseEvent(event)) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 457, in _wheel_event f.wheel(MouseEvent(event)) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 457, in _wheel_event f.wheel(MouseEvent(event)) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 457, in _wheel_event f.wheel(MouseEvent(event)) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 457, in _wheel_event f.wheel(MouseEvent(event)) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 457, in _wheel_event f.wheel(MouseEvent(event)) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 457, in _wheel_event f.wheel(MouseEvent(event)) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 457, in _wheel_event f.wheel(MouseEvent(event)) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 457, in _wheel_event f.wheel(MouseEvent(event)) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 457, in _wheel_event f.wheel(MouseEvent(event)) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 457, in _wheel_event f.wheel(MouseEvent(event)) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 457, in _wheel_event f.wheel(MouseEvent(event)) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. > volume selMaps hide > volume selMaps hide > volume selMaps show Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/mousemodes.py"", line 457, in _wheel_event f.wheel(MouseEvent(event)) File ""/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/mouse_modes/std_modes.py"", line 389, in wheel self.zoom(100*d*psize, stereo_scaling = not event.alt_down()) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 169, in zoom self.far_clip.plane_point = new_origin + new_view_vec*(1+self.far_clip_multiplier) File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping' File ""/home/UNIMELB/cmorton2/.local/share/ChimeraX/0.9/site- packages/chimerax/clipper/mousemodes.py"", line 113, in far_clip from chimerax.core.graphics.clipping import CameraClipPlane See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 418.43 OpenGL renderer: GeForce GTX 1080/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation }}} " defect closed normal Third Party duplicate Conrad Huang all ChimeraX