id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 2510 Toolshed startup code not guarding against 'cache_dir' being None Alex.Brown@… Conrad Huang "Hello and good morning, I have always had a great experience using Chimera and so I was hoping to try out ChimeraX for some of our larger cryo-em data sets. However, following download and an install that did not seem to produce an error message, I can not seem to initialize the program. I have copied the output from the command prompt below. Beyond that, I should probably also mention that we are running the centos-release-7-6.1810.2.el7.centos.x86_64 operating system with intel chips and nvidia graphics cards. [root@gaolab ~]# chimerax-daily NOTE: available bundle cache has not been initialized yet WARNING: could not retrieve bundle list from toolshed NOTE: Traceback (most recent call last): File ""/opt/UCSF/ChimeraX-daily/lib/python3.7/runpy.py"", line 193, in _run_module_as_main ""__main__"", mod_spec) File ""/opt/UCSF/ChimeraX-daily/lib/python3.7/runpy.py"", line 85, in _run_code exec(code, run_globals) File ""/opt/UCSF/ChimeraX-daily/lib/python3.7/site- packages/ChimeraX_main.py"", line 871, in exit_code = init(sys.argv) File ""/opt/UCSF/ChimeraX-daily/lib/python3.7/site- packages/ChimeraX_main.py"", line 580, in init check_available=opts.get_available_bundles) File ""/opt/UCSF/ChimeraX-daily/lib/python3.7/site- packages/chimerax/core/toolshed/__init__.py"", line 1681, in init _toolshed = Toolshed(*args, **kw) File ""/opt/UCSF/ChimeraX-daily/lib/python3.7/site- packages/chimerax/core/toolshed/__init__.py"", line 359, in __init__ if not available.has_cache_file(self._cache_dir): File ""/opt/UCSF/ChimeraX-daily/lib/python3.7/site- packages/chimerax/core/toolshed/available.py"", line 109, in has_cache_file return os.path.exists(os.path.join(cache_dir, _CACHE_FILE)) File ""/usr/bin/../../opt/UCSF/ChimeraX-daily/lib/python3.7/posixpath.py"", line 80, in join a = os.fspath(a) TypeError: expected str, bytes or os.PathLike object, not NoneType BUG: TypeError: expected str, bytes or os.PathLike object, not NoneType File ""/usr/bin/../../opt/UCSF/ChimeraX-daily/lib/python3.7/posixpath.py"", line 80, in join a = os.fspath(a) _See log for complete Python traceback._ Thanks in advance for any support you may be able to provide on this! -Alex Alexander Brown IV, PhD Postdoctoral Researcher Horae Gene Therapy Center Li Weibo Institute for Rare Diseases Research University of Massachusetts Medical School 368 Plantation Street, AS6-2011 Worcester, MA 01605 Phone: (508) 856-3316 Email: alex.brown@umassmed.edu " defect closed major Tool Shed fixed all ChimeraX