id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 2501 Widget redraw problem Tristan Croll Greg Couch "{{{ The following bug report has been submitted: Platform: Darwin-18.7.0-x86_64-i386-64bit ChimeraX Version: 0.91 (2019-10-10) Description Some PyQt widgets seem a bit messed up on the Mac lately, causing some pain on ISOLDE's control panel. Specifically, arranged in vertical/horizontal layouts aren't redrawing properly when showing/hiding one of the widgets. For example, if I go to the Validate tab and click the ""Show"" button beside Peptide bond geometry then it looks like the expanded table has covered up the Rotamers and Clashes entries. It hasn't - they just haven't redrawn. If I click in the place where one of the buttons should have moved to, it turns out it's there. When I click on another window so the ISOLDE panel loses focus, *then* it redraws properly. Seems like a (Py)Qt bug specific to the Mac... haven't seen the problem in Linux, but haven't tested in Windows yet. Log: UCSF ChimeraX version: 0.91 (2019-10-10) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX Successfully installed 'ChimeraX_ISOLDE-1.0b3.dev6-cp37-cp37m-macosx_10_9_x86_64.whl' Looking in indexes: https://pypi.org/simple, https://cxtoolshed.rbvi.ucsf.edu/pypi/ Processing ./Library/Caches/ChimeraX/0.91/installers/ChimeraX_ISOLDE-1.0b3.dev6-cp37-cp37m-macosx_10_9_x86_64.whl Requirement already satisfied, skipping upgrade: ChimeraX-Clipper>=0.9.10 in ./Library/Application Support/ChimeraX/0.91/site-packages (from ChimeraX- ISOLDE==1.0b3.dev6) (0.9.10) Requirement already satisfied, skipping upgrade: ChimeraX-Atomic>=1.0 in /Applications/ChimeraX_Daily.app/Contents/lib/python3.7/site-packages (from ChimeraX-ISOLDE==1.0b3.dev6) (1.0) Requirement already satisfied, skipping upgrade: ChimeraX-Core==0.91 in /Applications/ChimeraX_Daily.app/Contents/lib/python3.7/site-packages (from ChimeraX-ISOLDE==1.0b3.dev6) (0.91) Installing collected packages: ChimeraX-ISOLDE Found existing installation: ChimeraX-ISOLDE 1.0b3.dev6 Uninstalling ChimeraX-ISOLDE-1.0b3.dev6: Successfully uninstalled ChimeraX-ISOLDE-1.0b3.dev6 Successfully installed ChimeraX-ISOLDE-1.0b3.dev6 Lock 4487966992 acquired on /Users/tic20/Library/Caches/ChimeraX/0.91/toolshed/bundle_info.cache.lock Lock 4487966992 released on /Users/tic20/Library/Caches/ChimeraX/0.91/toolshed/bundle_info.cache.lock > isolde tutorial > isolde demo cryo_em modelOnly true startIsolde false 6out.pdb title: Asymmetric focused reconstruction of human norovirus gi.1 norwalk strain VLP asymmetric unit In T=3 symmetry [more info...] Chain information for 6out.pdb #1 --- Chain | Description A B C | capsid protein VP1 Loaded cryo-EM demo: PDB ID 6out, EMDB ID 20205 > open 20205 fromDatabase emdb Opened emd_20205.map, grid size 98,112,104, pixel 1.07,1.07,1.07, shown at level 0.287, step 1, values float32 > clipper associate #2 toModel #1 6out.pdb title: Asymmetric focused reconstruction of human norovirus gi.1 norwalk strain VLP asymmetric unit In T=3 symmetry [more info...] Chain information for 6out.pdb --- Chain | Description 1.3/A 1.3/B 1.3/C | capsid protein VP1 > isolde start > set selectionWidth 4 Forcefield cache not found or out of date. Regenerating from ffXML files. This is normal if running ISOLDE for the first time, or after upgrading OpenMM. Done loading forcefield > set bgColor white QWidget::repaint: Recursive repaint detected OpenGL version: 4.1 INTEL-12.10.12 OpenGL renderer: Intel(R) HD Graphics 6000 OpenGL vendor: Intel Inc. }}} " defect closed normal Window Toolkit fixed Eric Pettersen Tom Goddard all ChimeraX